RLG00000016351
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
5855360 .. 5858407
3048 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016351

Sequence Viewer

Length: 1185 bp
ATGGGTCGCCGAAAGAACCAAAGCACCAAGACCACCAATTCGAGCTCGACTGACTTGGCCCAAGGCTCGGCGGCGACTCCTGGGTTCGAAGACGAAGTGGGTGTCATAGACCACGACGAGTCCATGTCCATGTGCGACCCCGATCTTGACAAAGCCGTCGACGACTCCATGGGCGAGCCCGAGGTCTCCTTCGTCGACGCCAATGACAAAACCAGCGCCGACTATTACTTCGACTCCTATTCTCACTTCGGTATTCACGAAGAGATGTTGAAGGATCTAGTGAGAACCAAGACATATCAAAATGTTATTTATCAGAATAAGTTTCTATTCAAGGACAAAGTTGTTCTTGATGTCGGAGCTGGGACTGGAATTTTGTCCCTATTCTGTGCAAAAGCTGGTGCCAAGCATGTTTATGCAGTTGAGTGCTCAGATATGGCTGAGAGGGCAAAAGAGATTGTTGAAACTAACGGGTTTTCTAATGTTGTAACCGTTCTGAAAGGAAAGATTGAAGAACTTGAGCTTCCAGTTGCTAAAGTGGATATAATTATTTCTGAGTGGATGGGATACTTTTTGTTGTTTGAGAACATGTTGAATACAGTCCTCTATGCTCGTGATAAATGGCTTGTAGATGATGGAATTTTGCTACCGGACAAATGTTCTCTCTTTCTGACAGCTATTGAGGATGCAGAGTACAAAGAAGATAAGATAGAATTTTGGAATAATGTATATGGCTTTGACATGAGCTGCATCAAGAAGCAAGCCATGATGGAGCCTCTTGTGGACACGGTTGACCAAAACCAAATTGTTACTAATAGCCAGCTACTCAAGACAATGGATATATCTAAGATGACTCCTGGAGATGCTTCCTTCACAGCTCCTTTTAAGCTTATTGCTGAACGTGATGATTTCATTCATGCTCTTGTAGCCTACTTTGACGTGTCATTTACAAAATGTCATAAATTGATGGGATTCTCCACAGGGCCAAGATCGCGATCTACACATTGGAAGCAAACAGTCCTGTACTTGGAAGATGTGCTGACAGTATGTCAAGGAGAGTCGATTGTTGGAACCATGACTGTGGCGCAAAACAAAAAGAATCCCCGTGATATTGATATAATGCTTAAGTATTCATTGAATGGTCAGCGATGCACAGTCTCAAGGGTTCAATATTACAAGATGCGCTAA

Protein Analysis

395

Amino Acids

44.47

Weight (kDa)

4.96

Isoelectric Point (pI)

30.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PrmA PF06325 110 - 185 3e-09 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31 PF13847 111 - 187 2.4e-08 Methyltransferase domain
Methyltransf_25 PF13649 115 - 188 8.3e-10 Methyltransferase domain
Methyltransf_11 PF08241 116 - 200 4.2e-08 Methyltransferase domain
PRMT_C PF22528 217 - 381 4.5e-59 Arginine methyltransferase oligomerization subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
AccB1I GGYRCC 1 cut(s) 398
AccI GTMKAC 2 cut(s) 159, 195
AccII CGCG 1 cut(s) 991
AciI CCGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 282
AcsI RAATTY 3 cut(s) 369, 636, 710
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 2 cut(s) 692, 1022
AfiI CCNNNNNNNGG 2 cut(s) 67, 1024
AflII CTTAAG 1 cut(s) 1121
AflIII ACRYGT 2 cut(s) 585, 936
AgsI TTSAA 7 cut(s) 271, 331, 461, 509, 592, 1135, 1166
AhdI GACNNNNNGTC 1 cut(s) 1044
AjiI CACGTC 1 cut(s) 937
AjnI CCWGG 2 cut(s) 79, 853
AluBI AGCT 9 cut(s) 45, 359, 395, 520, 674, 744, 820, 875, 886
AluI AGCT 9 cut(s) 45, 359, 395, 520, 674, 744, 820, 875, 886
Alw21I GWGCWC 2 cut(s) 47, 428
Alw26I GTCTC 2 cut(s) 190, 1159
AlwI GGATC 1 cut(s) 282
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 2 cut(s) 57, 980
ApeKI GCWGC 1 cut(s) 744
ApoI RAATTY 3 cut(s) 369, 636, 710
ArsI GACNNNNNNTTYG 8 cut(s) 22, 54, 87, 119, 212, 244, 355, 387
AspLEI GCGC 3 cut(s) 218, 1084, 1182
AspS9I GGNCC 2 cut(s) 58, 980
AsuII TTCGAA 1 cut(s) 87
AvaI CYCGRG 1 cut(s) 179
BanI GGYRCC 1 cut(s) 398
BanII GRGCYC 2 cut(s) 47, 180
BauI CACGAG 1 cut(s) 609
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 2 cut(s) 47, 428
BbvI GCAGC 1 cut(s) 731
BccI CCATC 4 cut(s) 553, 626, 760, 958
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 2 cut(s) 81, 855
BciVI GTATCC 1 cut(s) 557
BcoDI GTCTC 2 cut(s) 190, 1159
BfaI CTAG 1 cut(s) 278
BfoI RGCGCY 1 cut(s) 219
BfrI CTTAAG 1 cut(s) 1121
BfuI GTATCC 1 cut(s) 557
BisI GCNGC 2 cut(s) 72, 745
BlsI GCNGC 2 cut(s) 73, 746
Bme1390I CCNGG 2 cut(s) 81, 855
BmeRI GACNNNNNGTC 1 cut(s) 1044
BmeT110I CYCGRG 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 937
BmgT120I GGNCC 2 cut(s) 58, 980
BmiI GGNNCC 3 cut(s) 400, 771, 1069
BmrFI CCNGG 2 cut(s) 81, 855
BmsI GCATC 5 cut(s) 673, 756, 850, 1136, 1167
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 876
Bpu14I TTCGAA 1 cut(s) 87
BpuEI CTTGAG 3 cut(s) 536, 809, 1141
BsaBI GATNNNNATC 1 cut(s) 991
BsaHI GRCGYC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 4 cut(s) 61, 80, 168, 180
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 1024
Bse1I ACTGG 2 cut(s) 370, 524
Bse8I GATNNNNATC 1 cut(s) 991
BseBI CCWGG 2 cut(s) 81, 855
BseDI CCNNGG 4 cut(s) 61, 80, 168, 180
BseGI GGATG 2 cut(s) 564, 688
BseJI GATNNNNATC 1 cut(s) 991
BseLI CCNNNNNNNGG 2 cut(s) 67, 1024
BseMII CTCAG 3 cut(s) 429, 441, 543
BseNI ACTGG 2 cut(s) 370, 524
BseXI GCAGC 1 cut(s) 731
BseYI CCCAGC 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 991
BshFI GGCC 2 cut(s) 59, 982
BshNI GGYRCC 1 cut(s) 398
BsiHKAI GWGCWC 2 cut(s) 47, 428
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 1 cut(s) 647
BslFI GGGAC 2 cut(s) 361, 376
BslI CCNNNNNNNGG 2 cut(s) 67, 1024
BsmAI GTCTC 2 cut(s) 190, 1159
BsmFI GGGAC 2 cut(s) 361, 376
BsnI GGCC 2 cut(s) 59, 982
Bso31I GGTCTC 1 cut(s) 190
BsoBI CYCGRG 1 cut(s) 179
Bsp119I TTCGAA 1 cut(s) 87
Bsp1286I GDGCHC 3 cut(s) 47, 180, 428
Bsp143I GATC 4 cut(s) 142, 274, 986, 992
Bsp19I CCATGG 1 cut(s) 168
Bsp68I TCGCGA 1 cut(s) 991
BspACI CCGC 1 cut(s) 71
BspANI GGCC 2 cut(s) 59, 982
BspCNI CTCAG 3 cut(s) 430, 440, 544
BspFNI CGCG 1 cut(s) 991
BspLI GGNNCC 3 cut(s) 400, 771, 1069
BspPI GGATC 1 cut(s) 282
BspT104I TTCGAA 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 398
BspTI CTTAAG 1 cut(s) 1121
BspTNI GGTCTC 1 cut(s) 190
BsrI ACTGG 2 cut(s) 370, 524
BssECI CCNNGG 4 cut(s) 61, 80, 168, 180
BssMI GATC 4 cut(s) 142, 274, 986, 992
BssNI GRCGYC 1 cut(s) 198
BssSI CACGAG 1 cut(s) 609
BssT1I CCWWGG 2 cut(s) 61, 168
Bst2BI CACGAG 1 cut(s) 609
Bst2UI CCWGG 2 cut(s) 81, 855
Bst4CI ACNGT 7 cut(s) 490, 598, 787, 1015, 1042, 1078, 1153
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 198
BstAFI CTTAAG 1 cut(s) 1121
BstBI TTCGAA 1 cut(s) 87
BstC8I GCNNGC 3 cut(s) 176, 759, 818
BstDEI CTNAG 4 cut(s) 427, 438, 552, 843
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 2 cut(s) 564, 688
BstFNI CGCG 1 cut(s) 991
BstH2I RGCGCY 1 cut(s) 219
BstHHI GCGC 3 cut(s) 218, 1084, 1182
BstKTI GATC 4 cut(s) 145, 277, 989, 995
BstMAI GTCTC 2 cut(s) 190, 1159
BstMBI GATC 4 cut(s) 142, 274, 986, 992
BstMWI GCNNNNNNNGC 3 cut(s) 443, 923, 988
BstNI CCWGG 2 cut(s) 81, 855
BstNSI RCATGY 2 cut(s) 410, 589
BstSCI CCNGG 2 cut(s) 79, 853
BstUI CGCG 1 cut(s) 991
BstV1I GCAGC 1 cut(s) 731
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 274
BstXI CCANNNNNNTGG 1 cut(s) 1078
BstYI RGATCY 1 cut(s) 274
BsuI GTATCC 1 cut(s) 557
BsuRI GGCC 2 cut(s) 59, 982
BtgI CCRYGG 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 1159
BtrI CACGTC 1 cut(s) 937
BtsCI GGATG 2 cut(s) 564, 688
BtuMI TCGCGA 1 cut(s) 991
Cac8I GCNNGC 3 cut(s) 176, 759, 818
CfoI GCGC 3 cut(s) 218, 1084, 1182
Cfr13I GGNCC 2 cut(s) 58, 980
CseI GACGC 1 cut(s) 206
Csp6I GTAC 2 cut(s) 691, 1021
CviAII CATG 9 cut(s) 124, 130, 169, 407, 586, 739, 763, 914, 1072
CviQI GTAC 2 cut(s) 691, 1021
DdeI CTNAG 4 cut(s) 427, 438, 552, 843
DpnI GATC 4 cut(s) 144, 276, 988, 994
DpnII GATC 4 cut(s) 142, 274, 986, 992
DrdI GACNNNNNNGTC 1 cut(s) 155
DriI GACNNNNNGTC 1 cut(s) 1044
DseDI GACNNNNNNGTC 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 255
Eam1105I GACNNNNNGTC 1 cut(s) 1044
EarI CTCTTC 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 61, 168
Eco24I GRGCYC 2 cut(s) 47, 180
Eco31I GGTCTC 1 cut(s) 190
Eco53kI GAGCTC 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 79, 853
EcoT14I CCWWGG 2 cut(s) 61, 168
EcoT38I GRGCYC 2 cut(s) 47, 180
ErhI CCWWGG 2 cut(s) 61, 168
FaeI CATG 9 cut(s) 127, 133, 172, 410, 589, 742, 766, 917, 1075
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FaqI GGGAC 2 cut(s) 361, 376
FatI CATG 9 cut(s) 123, 129, 168, 406, 585, 738, 762, 913, 1071
FblI GTMKAC 2 cut(s) 159, 195
Fnu4HI GCNGC 2 cut(s) 72, 745
FokI GGATG 2 cut(s) 571, 695
FriOI GRGCYC 2 cut(s) 47, 180
Fsp4HI GCNGC 2 cut(s) 72, 745
FspBI CTAG 1 cut(s) 278
GlaI GCGC 3 cut(s) 217, 1083, 1181
GluI GCNGC 2 cut(s) 72, 745
GsaI CCCAGC 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 876
HaeII RGCGCY 1 cut(s) 219
HaeIII GGCC 2 cut(s) 59, 982
HapII CCGG 1 cut(s) 647
HgaI GACGC 1 cut(s) 206
HhaI GCGC 3 cut(s) 218, 1084, 1182
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 9 cut(s) 127, 133, 172, 410, 589, 742, 766, 917, 1075
Hin6I GCGC 3 cut(s) 216, 1082, 1180
HinP1I GCGC 3 cut(s) 216, 1082, 1180
HincII GTYRAC 3 cut(s) 160, 196, 790
HindII GTYRAC 3 cut(s) 160, 196, 790
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 8 cut(s) 76, 119, 164, 233, 850, 969, 1055, 1096
HpaII CCGG 1 cut(s) 647
Hpy166II GTNNAC 4 cut(s) 160, 196, 781, 790
Hpy188I TCNGA 6 cut(s) 315, 356, 430, 495, 553, 669
Hpy188III TCNNGA 7 cut(s) 146, 257, 347, 611, 751, 826, 990
Hpy8I GTNNAC 4 cut(s) 160, 196, 781, 790
Hpy99I CGWCG 5 cut(s) 119, 161, 164, 197, 200
HpyAV CCTTC 3 cut(s) 199, 265, 877
HpyCH4III ACNGT 7 cut(s) 490, 598, 787, 1015, 1042, 1078, 1153
HpyCH4IV ACGT 2 cut(s) 898, 936
HpyCH4V TGCA 5 cut(s) 389, 416, 686, 747, 1149
HpyF10VI GCNNNNNNNGC 3 cut(s) 443, 923, 988
HpyF3I CTNAG 4 cut(s) 427, 438, 552, 843
HpySE526I ACGT 2 cut(s) 898, 936
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 9 cut(s) 127, 133, 172, 410, 589, 742, 766, 917, 1075
HspAI GCGC 3 cut(s) 216, 1082, 1180
Kzo9I GATC 4 cut(s) 142, 274, 986, 992
LmnI GCTCC 3 cut(s) 356, 769, 880
Lsp1109I GCAGC 1 cut(s) 731
LweI GCATC 5 cut(s) 673, 756, 850, 1136, 1167
MaeI CTAG 1 cut(s) 278
MaeII ACGT 2 cut(s) 898, 936
MaeIII GTNAC 2 cut(s) 484, 805
MalI GATC 4 cut(s) 144, 276, 988, 994
MboI GATC 4 cut(s) 142, 274, 986, 992
MboII GAAGA 5 cut(s) 101, 272, 521, 710, 1040
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 3 cut(s) 47, 180, 428
MluCI AATT 7 cut(s) 37, 369, 543, 636, 710, 801, 959
MlyI GAGTC 6 cut(s) 70, 128, 158, 227, 844, 1064
MmeI TCCRAC 2 cut(s) 334, 1045
MnlI CCTC 5 cut(s) 175, 435, 611, 673, 783
MseI TTAA 2 cut(s) 882, 1122
MslI CAYNNNNRTG 3 cut(s) 128, 411, 1076
MspCI CTTAAG 1 cut(s) 1121
MspI CCGG 1 cut(s) 647
MspR9I CCNGG 2 cut(s) 81, 855
MvaI CCWGG 2 cut(s) 81, 855
MvnI CGCG 1 cut(s) 991
MwoI GCNNNNNNNGC 3 cut(s) 443, 923, 988
NcoI CCATGG 1 cut(s) 168
NdeII GATC 4 cut(s) 142, 274, 986, 992
NlaIII CATG 9 cut(s) 127, 133, 172, 410, 589, 742, 766, 917, 1075
NlaIV GGNNCC 3 cut(s) 400, 771, 1069
NmeAIII GCCGAG 1 cut(s) 47
NruI TCGCGA 1 cut(s) 991
NspI RCATGY 2 cut(s) 410, 589
NspV TTCGAA 1 cut(s) 87
PciI ACATGT 1 cut(s) 585
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 2 cut(s) 969, 1096
PfoI TCCNGGA 1 cut(s) 853
PkrI GCNGC 2 cut(s) 73, 746
PleI GAGTC 6 cut(s) 70, 127, 158, 227, 844, 1063
PpsI GAGTC 6 cut(s) 70, 127, 158, 227, 844, 1063
PscI ACATGT 1 cut(s) 585
Psp124BI GAGCTC 1 cut(s) 47
Psp6I CCWGG 2 cut(s) 79, 853
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 2 cut(s) 79, 853
PspN4I GGNNCC 3 cut(s) 400, 771, 1069
PspPI GGNCC 2 cut(s) 58, 980
PsuI RGATCY 1 cut(s) 274
RruI TCGCGA 1 cut(s) 991
RsaI GTAC 2 cut(s) 692, 1022
RsaNI GTAC 2 cut(s) 691, 1021
RseI CAYNNNNRTG 3 cut(s) 128, 411, 1076
SacI GAGCTC 1 cut(s) 47
SalI GTCGAC 2 cut(s) 158, 194
SaqAI TTAA 2 cut(s) 882, 1122
SatI GCNGC 2 cut(s) 72, 745
Sau3AI GATC 4 cut(s) 142, 274, 986, 992
Sau96I GGNCC 2 cut(s) 58, 980
SchI GAGTC 6 cut(s) 70, 128, 158, 227, 844, 1064
ScrFI CCNGG 2 cut(s) 81, 855
SduI GDGCHC 3 cut(s) 47, 180, 428
SfaNI GCATC 5 cut(s) 673, 756, 850, 1136, 1167
SfuI TTCGAA 1 cut(s) 87
SgrDI CGTCGACG 2 cut(s) 158, 194
SmiMI CAYNNNNRTG 3 cut(s) 128, 411, 1076
SmlI CTYRAG 4 cut(s) 515, 824, 1121, 1156
SmoI CTYRAG 4 cut(s) 515, 824, 1121, 1156
Sse9I AATT 7 cut(s) 37, 369, 543, 636, 710, 801, 959
SsiI CCGC 1 cut(s) 71
SspI AATATT 1 cut(s) 1169
SspMI CTAG 1 cut(s) 278
SstI GAGCTC 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 79, 853
StyI CCWWGG 2 cut(s) 61, 168
TaaI ACNGT 7 cut(s) 490, 598, 787, 1015, 1042, 1078, 1153
TaiI ACGT 2 cut(s) 901, 939
TaqI TCGA 7 cut(s) 41, 47, 87, 159, 195, 231, 1058
TasI AATT 7 cut(s) 37, 369, 543, 636, 710, 801, 959
TatI WGTACW 2 cut(s) 690, 1020
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 969, 1096
Tru1I TTAA 2 cut(s) 882, 1122
Tru9I TTAA 2 cut(s) 882, 1122
TseI GCWGC 1 cut(s) 744
TspDTI ATGAA 3 cut(s) 898, 902, 1119
Vha464I CTTAAG 1 cut(s) 1121
XapI RAATTY 3 cut(s) 369, 636, 710
XceI RCATGY 2 cut(s) 410, 589
XmiI GTMKAC 2 cut(s) 159, 195
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.