Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008498

Physical Location & Seq

Genomic Coordinates Forward (+)

3965305 .. 3968063

Gene Structure 2759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05870.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGGTCGCCGAAAGAACACCAACAACAGCGGCAGCAGCAGCAACCAGACTTCCGCGGCTGCGCGCTTCGGCCACCTCGACGAAGCTGTCAAAGACGTCTCCGAGAGCTCCAACCACGACGAGTCCATGTGCGACCCCGAGCTCCACAAGGCCGCCGATGACTCAATGGGCGAGCCGGAGGTCTCCTTCGTCGAAGCCGATGGAAAGACCAGCGCCGACTATTACTTTGACTCCTACTCTCACTTTGGTATTCATGAAGAAATGTTGAAGGATTTAGTGAGGACTAAGACATATCAGAATGTTATCTATCAGAATAAGTTTCTAATAAAGGACAAGATTGTTCTTGACGTGGGAGCTGGGACTGGAATTTTGTCCCTATTTTGTGCAAAAGCGGGTGCAAAGCATGTTTATGCGGTAGAGTGCTCCGACATGGCTGACATGGCAAAAGAGATTGTTGAAACTAACGGATATTCTAATGTAATAACAGTTCTGAAGGGGAAGATTGAAGAACTTGAGCTTCCCGTCCCTAAAGTGGATATAATTATCTCTGAATGGATGGGATATTTCTTGTTGTTTGAGAATATGTTAAATACGGTCCTCTATGCTCGTGATAAATGGCTTGTAGATGATGGCATTCTACTGCCAGACAAAGCGTCTCTGTTTTTGACAGCTATTGAGGATGCAGAGTACAAAGAGGACAAGATAGAATTTTGGAACAATGTTTATAGCTTTGACATGAGCTGCATCAAGAAGCAAGCCATGATGGAGCCCCTTGTGGACACCGTTGACCAAAACCAGATTGTTACAAACAGTCAGCTACTCAAGACAATGGATATATCCAAGATGACTTCGGGAGATGCTTCCTTCACAGCCCCTTTCAAGCTTGTTGCTGAACGTGACGATTTCGTTCATGCTCTTGTAGCCTACTTTGATGTTTCATTTACGAAGTGTCATAAATTGATGGGCTTCTCCACAGGGCCAAGATCGCGGTCTACTCACTGGAAGCAAACTGTCCTGTACCTGGAAGATGTGCTAACAGTATGTCAAGGAGAGTCAATTGTCGGAAGCATGACTGTGGCGCAAAACAAAAAGAATCCCCGTGATATTGACATAATGCTCAAGTATTCGTTAAATGGTCAACGATGCTCAGTCTCGAGGGTTCAATGCTTCAAAATGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04068 ko04922 map04068 map04922

Pfam Domains

Protein Families

Methyltransf_25 PrmA

Protein Analysis

394

Amino Acids

44.23

Weight (kDa)

5.17

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19670 AT4G29510
fragaria_vesca	FvH4_1g06990 FvH4_1g06990 FvH4_1g06990
malus_domestica	MD02G1074300.v1.1 MD15G1203800.v1.1
prunus_persica	Prupe.7G213600_v2.0.a1 Prupe.7G213600_v2.0.a1 Prupe.7G213600_v2.0.a1
pyrus_communis	pycom02g05870 pycom15g18060
rosa_chinensis	RchiOBHm_Chr2g0092941
rosa_laevigata	RLG00000016351
rosa_multiflora	Rmu_sc0000965.1_g000015
rosa_roxburghii	Rroxscaffold_2G00148690
rosa_rugosa	Rorug02G0030400 Rorug02G0030500
rosa_samantha	Rh2AG076500 Rh2BG077800 Rh2CG080000 Rh2DG075100
rosa_wichuraiana	Rw2G006970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AatII	GACGTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	992
AccII	CGCG	3 cut(s)	56, 64, 988
AciI	CCGC	7 cut(s)	30, 54, 56, 153, 392, 413, 988
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	366, 707
AcuI	CTGAAG	1 cut(s)	512
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	2 cut(s)	689, 1019
AfiI	CCNNNNNNNGG	2 cut(s)	532, 1021
AgsI	TTSAA	6 cut(s)	268, 458, 506, 880, 1163, 1171
AhdI	GACNNNNNGTC	1 cut(s)	652
AjiI	CACGTC	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	1020
Alw21I	GWGCWC	3 cut(s)	110, 144, 425
Alw26I	GTCTC	4 cut(s)	103, 187, 660, 1156
Ama87I	CYCGRG	2 cut(s)	137, 1153
AoxI	GGCC	3 cut(s)	70, 150, 977
ApeKI	GCWGC	5 cut(s)	33, 36, 39, 59, 741
ApoI	RAATTY	2 cut(s)	366, 707
ArsI	GACNNNNNNTTYG	4 cut(s)	209, 241, 352, 384
AspLEI	GCGC	5 cut(s)	64, 66, 215, 1081, 1179
AspS9I	GGNCC	2 cut(s)	595, 977
AvaI	CYCGRG	2 cut(s)	137, 1153
AvaII	GGWCC	1 cut(s)	595
BanII	GRGCYC	3 cut(s)	110, 144, 771
BauI	CACGAG	1 cut(s)	606
Bbv12I	GWGCWC	3 cut(s)	110, 144, 425
BbvI	GCAGC	5 cut(s)	45, 46, 48, 51, 728
BccI	CCATC	5 cut(s)	194, 550, 623, 757, 955
BciT130I	CCWGG	1 cut(s)	1022
BcoDI	GTCTC	4 cut(s)	103, 187, 660, 1156
BfoI	RGCGCY	1 cut(s)	216
BisI	GCNGC	8 cut(s)	31, 34, 37, 40, 57, 60, 153, 742
BlsI	GCNGC	8 cut(s)	32, 35, 38, 41, 58, 61, 154, 743
Bme1390I	CCNGG	1 cut(s)	1022
Bme18I	GGWCC	1 cut(s)	595
BmeRI	GACNNNNNGTC	1 cut(s)	652
BmeT110I	CYCGRG	2 cut(s)	137, 1153
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	595, 977
BmiI	GGNNCC	1 cut(s)	768
BmrFI	CCNGG	1 cut(s)	1022
BmsI	GCATC	4 cut(s)	670, 753, 847, 1133
BpuEI	CTTGAG	3 cut(s)	533, 806, 1103
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	2 cut(s)	532, 1021
Bse1I	ACTGG	2 cut(s)	367, 1004
BseBI	CCWGG	1 cut(s)	1022
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	2 cut(s)	561, 685
BseLI	CCNNNNNNNGG	2 cut(s)	532, 1021
BseMII	CTCAG	1 cut(s)	1161
BseNI	ACTGG	2 cut(s)	367, 1004
BsePI	GCGCGC	1 cut(s)	62
BseXI	GCAGC	5 cut(s)	45, 46, 48, 51, 728
BseYI	CCCAGC	1 cut(s)	356
Bsh1236I	CGCG	3 cut(s)	56, 64, 988
BshFI	GGCC	3 cut(s)	72, 152, 979
BsiHKAI	GWGCWC	3 cut(s)	110, 144, 425
BsiHKCI	CYCGRG	2 cut(s)	137, 1153
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	3 cut(s)	358, 373, 509
BslI	CCNNNNNNNGG	2 cut(s)	532, 1021
BsmAI	GTCTC	4 cut(s)	103, 187, 660, 1156
BsmBI	CGTCTC	2 cut(s)	103, 660
BsmFI	GGGAC	3 cut(s)	358, 373, 509
BsmI	GAATGC	1 cut(s)	633
BsnI	GGCC	3 cut(s)	72, 152, 979
Bso31I	GGTCTC	1 cut(s)	187
BsoBI	CYCGRG	2 cut(s)	137, 1153
Bsp1286I	GDGCHC	4 cut(s)	110, 144, 425, 771
Bsp143I	GATC	1 cut(s)	983
BspACI	CCGC	7 cut(s)	30, 54, 56, 153, 392, 413, 988
BspANI	GGCC	3 cut(s)	72, 152, 979
BspCNI	CTCAG	1 cut(s)	1160
BspFNI	CGCG	3 cut(s)	56, 64, 988
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	768
BspTNI	GGTCTC	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	367, 1004
BssECI	CCNNGG	1 cut(s)	54
BssHII	GCGCGC	1 cut(s)	62
BssMI	GATC	1 cut(s)	983
BssNI	GRCGYC	1 cut(s)	96
BssSI	CACGAG	1 cut(s)	606
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	1022
Bst4CI	ACNGT	7 cut(s)	487, 595, 784, 812, 1012, 1039, 1075
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	3 cut(s)	64, 173, 756
BstDEI	CTNAG	2 cut(s)	285, 1147
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	561, 685
BstFNI	CGCG	3 cut(s)	56, 64, 988
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	5 cut(s)	64, 66, 215, 1081, 1179
BstKTI	GATC	1 cut(s)	986
BstMAI	GTCTC	4 cut(s)	103, 187, 660, 1156
BstMBI	GATC	1 cut(s)	983
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 39, 440, 920, 985
BstNI	CCWGG	1 cut(s)	1022
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	1020
BstUI	CGCG	3 cut(s)	56, 64, 988
BstV1I	GCAGC	5 cut(s)	45, 46, 48, 51, 728
BsuRI	GGCC	3 cut(s)	72, 152, 979
BtgI	CCRYGG	1 cut(s)	54
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	561, 685
BtsIMutI	CAGTG	1 cut(s)	997
Cac8I	GCNNGC	3 cut(s)	64, 173, 756
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	5 cut(s)	64, 66, 215, 1081, 1179
Cfr13I	GGNCC	2 cut(s)	595, 977
Cfr42I	CCGCGG	1 cut(s)	57
CseI	GACGC	1 cut(s)	642
Csp6I	GTAC	2 cut(s)	688, 1018
CviAII	CATG	9 cut(s)	127, 254, 404, 430, 439, 736, 760, 911, 1069
CviQI	GTAC	2 cut(s)	688, 1018
DdeI	CTNAG	2 cut(s)	285, 1147
DpnI	GATC	1 cut(s)	985
DpnII	GATC	1 cut(s)	983
DrdI	GACNNNNNNGTC	1 cut(s)	86
DriI	GACNNNNNGTC	1 cut(s)	652
DseDI	GACNNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	1 cut(s)	70
Eam1105I	GACNNNNNGTC	1 cut(s)	652
Ecl136II	GAGCTC	2 cut(s)	108, 142
Eco24I	GRGCYC	3 cut(s)	110, 144, 771
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	595
Eco53kI	GAGCTC	2 cut(s)	108, 142
Eco57I	CTGAAG	1 cut(s)	512
Eco88I	CYCGRG	2 cut(s)	137, 1153
EcoICRI	GAGCTC	2 cut(s)	108, 142
EcoRII	CCWGG	1 cut(s)	1020
EcoT38I	GRGCYC	3 cut(s)	110, 144, 771
Esp3I	CGTCTC	2 cut(s)	103, 660
FaeI	CATG	9 cut(s)	130, 257, 407, 433, 442, 739, 763, 914, 1072
FaqI	GGGAC	3 cut(s)	358, 373, 509
FatI	CATG	9 cut(s)	126, 253, 403, 429, 438, 735, 759, 910, 1068
FauI	CCCGC	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	992
Fnu4HI	GCNGC	8 cut(s)	31, 34, 37, 40, 57, 60, 153, 742
FokI	GGATG	2 cut(s)	568, 692
FriOI	GRGCYC	3 cut(s)	110, 144, 771
Fsp4HI	GCNGC	8 cut(s)	31, 34, 37, 40, 57, 60, 153, 742
GlaI	GCGC	5 cut(s)	63, 65, 214, 1080, 1178
GluI	GCNGC	8 cut(s)	31, 34, 37, 40, 57, 60, 153, 742
GsaI	CCCAGC	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	3 cut(s)	72, 152, 979
HapII	CCGG	1 cut(s)	176
HgaI	GACGC	1 cut(s)	642
HhaI	GCGC	5 cut(s)	64, 66, 215, 1081, 1179
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	9 cut(s)	130, 257, 407, 433, 442, 739, 763, 914, 1072
Hin6I	GCGC	5 cut(s)	62, 64, 213, 1079, 1177
HinP1I	GCGC	5 cut(s)	62, 64, 213, 1079, 1177
HincII	GTYRAC	2 cut(s)	787, 1139
HindII	GTYRAC	2 cut(s)	787, 1139
HindIII	AAGCTT	1 cut(s)	881
HinfI	GANTC	5 cut(s)	122, 161, 230, 1052, 1093
HpaII	CCGG	1 cut(s)	176
Hpy166II	GTNNAC	4 cut(s)	778, 787, 993, 1139
Hpy188I	TCNGA	7 cut(s)	103, 297, 312, 427, 492, 550, 1064
Hpy188III	TCNNGA	7 cut(s)	254, 344, 608, 748, 823, 852, 1153
Hpy8I	GTNNAC	4 cut(s)	778, 787, 993, 1139
Hpy99I	CGWCG	3 cut(s)	83, 122, 194
HpyAV	CCTTC	4 cut(s)	196, 262, 487, 874
HpyCH4III	ACNGT	7 cut(s)	487, 595, 784, 812, 1012, 1039, 1075
HpyCH4IV	ACGT	3 cut(s)	96, 348, 895
HpyCH4V	TGCA	4 cut(s)	386, 398, 683, 744
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 39, 440, 920, 985
HpyF3I	CTNAG	2 cut(s)	285, 1147
HpySE526I	ACGT	3 cut(s)	96, 348, 895
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	9 cut(s)	130, 257, 407, 433, 442, 739, 763, 914, 1072
HspAI	GCGC	5 cut(s)	62, 64, 213, 1079, 1177
KspI	CCGCGG	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	983
LmnI	GCTCC	5 cut(s)	113, 147, 353, 428, 766
Lsp1109I	GCAGC	5 cut(s)	45, 46, 48, 51, 728
LweI	GCATC	4 cut(s)	670, 753, 847, 1133
MaeII	ACGT	3 cut(s)	96, 348, 895
MaeIII	GTNAC	2 cut(s)	802, 896
MalI	GATC	1 cut(s)	985
MboI	GATC	1 cut(s)	983
MboII	GAAGA	4 cut(s)	269, 511, 518, 1037
MfeI	CAATTG	1 cut(s)	1056
MhlI	GDGCHC	4 cut(s)	110, 144, 425, 771
MluCI	AATT	5 cut(s)	366, 540, 707, 956, 1056
MlyI	GAGTC	4 cut(s)	131, 155, 224, 1061
MmeI	TCCRAC	3 cut(s)	135, 450, 1042
MnlI	CCTC	7 cut(s)	86, 172, 273, 608, 670, 688, 1149
MseI	TTAA	2 cut(s)	587, 1130
MslI	CAYNNNNRTG	2 cut(s)	408, 1073
MspA1I	CMGCKG	2 cut(s)	30, 56
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	1022
MunI	CAATTG	1 cut(s)	1056
Mva1269I	GAATGC	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	1022
MvnI	CGCG	3 cut(s)	56, 64, 988
MwoI	GCNNNNNNNGC	5 cut(s)	36, 39, 440, 920, 985
NdeII	GATC	1 cut(s)	983
NlaIII	CATG	9 cut(s)	130, 257, 407, 433, 442, 739, 763, 914, 1072
NlaIV	GGNNCC	1 cut(s)	768
NmuCI	GTSAC	1 cut(s)	896
NspI	RCATGY	1 cut(s)	407
PaeR7I	CTCGAG	1 cut(s)	1153
PagI	TCATGA	1 cut(s)	253
PauI	GCGCGC	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 195
PctI	GAATGC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	1093
PkrI	GCNGC	8 cut(s)	32, 35, 38, 41, 58, 61, 154, 743
PleI	GAGTC	4 cut(s)	130, 155, 224, 1060
PpsI	GAGTC	4 cut(s)	130, 155, 224, 1060
Psp124BI	GAGCTC	2 cut(s)	110, 144
Psp6I	CCWGG	1 cut(s)	1020
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	1020
PspN4I	GGNNCC	1 cut(s)	768
PspPI	GGNCC	2 cut(s)	595, 977
PsrI	GAACNNNNNNTAC	2 cut(s)	471, 503
PteI	GCGCGC	1 cut(s)	62
RsaI	GTAC	2 cut(s)	689, 1019
RsaNI	GTAC	2 cut(s)	688, 1018
RseI	CAYNNNNRTG	2 cut(s)	408, 1073
SacI	GAGCTC	2 cut(s)	110, 144
SacII	CCGCGG	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	587, 1130
SatI	GCNGC	8 cut(s)	31, 34, 37, 40, 57, 60, 153, 742
Sau3AI	GATC	1 cut(s)	983
Sau96I	GGNCC	2 cut(s)	595, 977
SchI	GAGTC	4 cut(s)	131, 155, 224, 1061
ScrFI	CCNGG	1 cut(s)	1022
SduI	GDGCHC	4 cut(s)	110, 144, 425, 771
SfaNI	GCATC	4 cut(s)	670, 753, 847, 1133
Sfr274I	CTCGAG	1 cut(s)	1153
Sfr303I	CCGCGG	1 cut(s)	57
SgrBI	CCGCGG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	595
SlaI	CTCGAG	1 cut(s)	1153
SmiMI	CAYNNNNRTG	2 cut(s)	408, 1073
SmlI	CTYRAG	4 cut(s)	512, 821, 1118, 1153
SmoI	CTYRAG	4 cut(s)	512, 821, 1118, 1153
Sse9I	AATT	5 cut(s)	366, 540, 707, 956, 1056
SsiI	CCGC	7 cut(s)	30, 54, 56, 153, 392, 413, 988
SstI	GAGCTC	2 cut(s)	110, 144
StyD4I	CCNGG	1 cut(s)	1020
TaaI	ACNGT	7 cut(s)	487, 595, 784, 812, 1012, 1039, 1075
TaiI	ACGT	3 cut(s)	99, 351, 898
TaqI	TCGA	3 cut(s)	78, 192, 1154
TasI	AATT	5 cut(s)	366, 540, 707, 956, 1056
TatI	WGTACW	1 cut(s)	687
TauI	GCSGC	3 cut(s)	33, 59, 155
TfiI	GAWTC	1 cut(s)	1093
Tru1I	TTAA	2 cut(s)	587, 1130
Tru9I	TTAA	2 cut(s)	587, 1130
TscAI	CASTG	1 cut(s)	1004
TseFI	GTSAC	1 cut(s)	896
TseI	GCWGC	5 cut(s)	33, 36, 39, 59, 741
Tsp45I	GTSAC	1 cut(s)	896
TspDTI	ATGAA	4 cut(s)	242, 270, 899, 927
TspGWI	ACGGA	1 cut(s)	480
TspRI	CASTG	1 cut(s)	1004
VpaK11BI	GGWCC	1 cut(s)	595
XapI	RAATTY	2 cut(s)	366, 707
XceI	RCATGY	1 cut(s)	407
XhoI	CTCGAG	1 cut(s)	1153
XmiI	GTMKAC	1 cut(s)	992
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.