RchiOBHm_Chr2g0092941
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
6356858 .. 6360191
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46801

Sequence Viewer

Length: 1182 bp
ATGGGTCGCCGAAAGAACCAAAGCACCAAGACCACCAATTCGTGCTCGACGGACTTGGCCCAAGGCTCAGCGACTCCTGGGTTCGAAGACGAAGTGGGTGTCATAGACCACGACGAGTCCATGTCCATGTGCGACCCTGATCTCGACAAAGCCGTCGACGACTCCATGGGCGAGCCCGAGGTCTCCTTCGTCGACGCCAATGACAAAACCAGCGCCGACTATTACTTCGACTCCTATTCTCACTTCGGTATTCACGAAGAGATGTTGAAGGATCTAGTGAGAACCAAGACGTATCAAAATGTTATTTATCAGAATAAGTTTCTATTCAAGGACAAAGTTGTTCTTGATGTCGGAGCTGGGACTGGAATTTTGTCCCTATTCTGTGCAAAAGCTGGTGCCAAGCATGTTTATGCAGTTGAGTGCTCAGATATGGCTGAGAGGGCAAAAGAGATTGTTGAAACTAACGGGTTTTCTAATGTTGTTACCGTTCTGAAAGGAAAGATTGAAGAACTTGAGCTTCCGGTTGCTAAAGTGGATATAATTATTTCTGAGTGGATGGGATACTTTTTGTTGTTTGAGAACATGTTGAATACAGTCCTCTATGCTCGTGATAAATGGCTTGTAGATGATGGAATTTTGCTACCGGACAAATGTTCTCTCTTTCTGACAGCTATTGAGGATGCAGAGTACAAAGAAGATAAGATAGAATTTTGGAATAATGTATATGGCTTTGACATGAGCTGCATCAAGAAGCAAGCCATGATGGAGCCTCTTGTGGACACGGTTGACCAAAACCAAATTGTTACTAATAGCCAGCTACTCAAGACAATGGATATATCTAAGATGACTCCTGGAGATGCTTCCTTCACAGCTCCTTTTAAGCTTATTGCTGAACGTGATGATTTCATTCATGCTCTTGTAGCCTACTTTGACGTGTCATTTACAAAATGTCATAAATTGATGGGCTTCTCCACAGGGCCAAGATCGCGATCTACACATTGGAAGCAAACAGTCCTGTACTTGGAAGATGTGCTGACAGTATGTCAAGGAGAGTCGATTGTTGGAACCATGACTGTGGCGCAAAACAAAAAGAATCCCCGTGATATTGATATAATGCTCAAGTATTCATTGAATGGTCAGCGATGCAGTGTCTCAAGGGTTCAATATTACAAGATGCGCTAA

Protein Analysis

393

Amino Acids

44.4

Weight (kDa)

4.96

Isoelectric Point (pI)

29.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PrmA PF06325 109 - 184 3e-09 Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31 PF13847 110 - 186 2.3e-08 Methyltransferase domain
Methyltransf_25 PF13649 114 - 187 8.2e-10 Methyltransferase domain
Methyltransf_11 PF08241 115 - 199 4.2e-08 Methyltransferase domain
PRMT_C PF22528 216 - 380 4.5e-59 Arginine methyltransferase oligomerization subdomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 395
AccI GTMKAC 2 cut(s) 156, 192
AccII CGCG 1 cut(s) 988
AclWI GGATC 1 cut(s) 279
AcsI RAATTY 3 cut(s) 366, 633, 707
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 2 cut(s) 689, 1019
AfiI CCNNNNNNNGG 1 cut(s) 1021
AflIII ACRYGT 2 cut(s) 582, 933
AgsI TTSAA 7 cut(s) 268, 328, 458, 506, 589, 1132, 1163
AhdI GACNNNNNGTC 1 cut(s) 1041
AjiI CACGTC 1 cut(s) 934
AjnI CCWGG 2 cut(s) 76, 850
AluBI AGCT 8 cut(s) 356, 392, 517, 671, 741, 817, 872, 883
AluI AGCT 8 cut(s) 356, 392, 517, 671, 741, 817, 872, 883
Alw21I GWGCWC 2 cut(s) 47, 425
Alw26I GTCTC 2 cut(s) 187, 1156
AlwI GGATC 1 cut(s) 279
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 2 cut(s) 57, 977
ApeKI GCWGC 1 cut(s) 741
ApoI RAATTY 3 cut(s) 366, 633, 707
ArsI GACNNNNNNTTYG 8 cut(s) 22, 54, 84, 116, 209, 241, 352, 384
AspLEI GCGC 3 cut(s) 215, 1081, 1179
AspS9I GGNCC 2 cut(s) 58, 977
AsuII TTCGAA 1 cut(s) 84
AvaI CYCGRG 1 cut(s) 176
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 177
BauI CACGAG 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 2 cut(s) 47, 425
BbvI GCAGC 1 cut(s) 728
BccI CCATC 4 cut(s) 550, 623, 757, 955
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 2 cut(s) 78, 852
BciVI GTATCC 1 cut(s) 554
BcoDI GTCTC 2 cut(s) 187, 1156
BfaI CTAG 1 cut(s) 275
BfoI RGCGCY 1 cut(s) 216
BfuI GTATCC 1 cut(s) 554
BisI GCNGC 1 cut(s) 742
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 743
Bme1390I CCNGG 2 cut(s) 78, 852
BmeRI GACNNNNNGTC 1 cut(s) 1041
BmeT110I CYCGRG 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 934
BmgT120I GGNCC 2 cut(s) 58, 977
BmiI GGNNCC 3 cut(s) 397, 768, 1066
BmrFI CCNGG 2 cut(s) 78, 852
BmsI GCATC 5 cut(s) 670, 753, 847, 1133, 1164
BpiI GAAGAC 1 cut(s) 93
BpmI CTGGAG 1 cut(s) 873
Bpu1102I GCTNAGC 1 cut(s) 67
Bpu14I TTCGAA 1 cut(s) 84
BpuEI CTTGAG 4 cut(s) 533, 806, 1103, 1138
BsaBI GATNNNNATC 1 cut(s) 988
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 187
BsaJI CCNNGG 4 cut(s) 61, 77, 165, 177
BsaWI WCCGGW 2 cut(s) 520, 643
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 1 cut(s) 1021
Bse1I ACTGG 1 cut(s) 367
Bse8I GATNNNNATC 1 cut(s) 988
BseBI CCWGG 2 cut(s) 78, 852
BseDI CCNNGG 4 cut(s) 61, 77, 165, 177
BseGI GGATG 2 cut(s) 561, 685
BseJI GATNNNNATC 1 cut(s) 988
BseLI CCNNNNNNNGG 1 cut(s) 1021
BseMII CTCAG 4 cut(s) 81, 426, 438, 540
BseNI ACTGG 1 cut(s) 367
BseXI GCAGC 1 cut(s) 728
BseYI CCCAGC 1 cut(s) 356
Bsh1236I CGCG 1 cut(s) 988
BshFI GGCC 2 cut(s) 59, 979
BshNI GGYRCC 1 cut(s) 395
BsiHKAI GWGCWC 2 cut(s) 47, 425
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 2 cut(s) 521, 644
BslFI GGGAC 2 cut(s) 358, 373
BslI CCNNNNNNNGG 1 cut(s) 1021
BsmAI GTCTC 2 cut(s) 187, 1156
BsmFI GGGAC 2 cut(s) 358, 373
BsnI GGCC 2 cut(s) 59, 979
Bso31I GGTCTC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 84
Bsp1286I GDGCHC 3 cut(s) 47, 177, 425
Bsp143I GATC 4 cut(s) 139, 271, 983, 989
Bsp1720I GCTNAGC 1 cut(s) 67
Bsp19I CCATGG 1 cut(s) 165
Bsp68I TCGCGA 1 cut(s) 988
BspANI GGCC 2 cut(s) 59, 979
BspCNI CTCAG 4 cut(s) 80, 427, 437, 541
BspFNI CGCG 1 cut(s) 988
BspLI GGNNCC 3 cut(s) 397, 768, 1066
BspPI GGATC 1 cut(s) 279
BspT104I TTCGAA 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 395
BspTNI GGTCTC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 367
BssECI CCNNGG 4 cut(s) 61, 77, 165, 177
BssMI GATC 4 cut(s) 139, 271, 983, 989
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 1 cut(s) 606
BssT1I CCWWGG 2 cut(s) 61, 165
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 2 cut(s) 78, 852
Bst4CI ACNGT 6 cut(s) 487, 595, 784, 1012, 1039, 1075
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 84
BstC8I GCNNGC 3 cut(s) 173, 756, 815
BstDEI CTNAG 5 cut(s) 67, 424, 435, 549, 840
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 2 cut(s) 561, 685
BstFNI CGCG 1 cut(s) 988
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 3 cut(s) 215, 1081, 1179
BstKTI GATC 4 cut(s) 142, 274, 986, 992
BstMAI GTCTC 2 cut(s) 187, 1156
BstMBI GATC 4 cut(s) 139, 271, 983, 989
BstMWI GCNNNNNNNGC 3 cut(s) 440, 920, 985
BstNI CCWGG 2 cut(s) 78, 852
BstNSI RCATGY 2 cut(s) 407, 586
BstSCI CCNGG 2 cut(s) 76, 850
BstUI CGCG 1 cut(s) 988
BstV1I GCAGC 1 cut(s) 728
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 271
BstXI CCANNNNNNTGG 1 cut(s) 1075
BstYI RGATCY 1 cut(s) 271
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 2 cut(s) 59, 979
BtgI CCRYGG 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 1156
BtrI CACGTC 1 cut(s) 934
BtsCI GGATG 2 cut(s) 561, 685
BtsI GCAGTG 1 cut(s) 1153
BtsIMutI CAGTG 1 cut(s) 1153
BtuMI TCGCGA 1 cut(s) 988
Cac8I GCNNGC 3 cut(s) 173, 756, 815
CfoI GCGC 3 cut(s) 215, 1081, 1179
Cfr13I GGNCC 2 cut(s) 58, 977
CseI GACGC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 688, 1018
CviAII CATG 9 cut(s) 121, 127, 166, 404, 583, 736, 760, 911, 1069
CviQI GTAC 2 cut(s) 688, 1018
DdeI CTNAG 5 cut(s) 67, 424, 435, 549, 840
DpnI GATC 4 cut(s) 141, 273, 985, 991
DpnII GATC 4 cut(s) 139, 271, 983, 989
DrdI GACNNNNNNGTC 1 cut(s) 152
DriI GACNNNNNGTC 1 cut(s) 1041
DseDI GACNNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 252
Eam1105I GACNNNNNGTC 1 cut(s) 1041
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 2 cut(s) 61, 165
Eco24I GRGCYC 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 76, 850
EcoT14I CCWWGG 2 cut(s) 61, 165
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 2 cut(s) 61, 165
FaeI CATG 9 cut(s) 124, 130, 169, 407, 586, 739, 763, 914, 1072
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 2 cut(s) 358, 373
FatI CATG 9 cut(s) 120, 126, 165, 403, 582, 735, 759, 910, 1068
FblI GTMKAC 2 cut(s) 156, 192
Fnu4HI GCNGC 1 cut(s) 742
FokI GGATG 2 cut(s) 568, 692
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 742
FspBI CTAG 1 cut(s) 275
GlaI GCGC 3 cut(s) 214, 1080, 1178
GluI GCNGC 1 cut(s) 742
GsaI CCCAGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 873
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 2 cut(s) 59, 979
HapII CCGG 2 cut(s) 521, 644
HgaI GACGC 1 cut(s) 203
HhaI GCGC 3 cut(s) 215, 1081, 1179
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 9 cut(s) 124, 130, 169, 407, 586, 739, 763, 914, 1072
Hin6I GCGC 3 cut(s) 213, 1079, 1177
HinP1I GCGC 3 cut(s) 213, 1079, 1177
HincII GTYRAC 3 cut(s) 157, 193, 787
HindII GTYRAC 3 cut(s) 157, 193, 787
HindIII AAGCTT 1 cut(s) 881
HinfI GANTC 7 cut(s) 73, 116, 161, 230, 847, 1052, 1093
HpaII CCGG 2 cut(s) 521, 644
Hpy166II GTNNAC 4 cut(s) 157, 193, 778, 787
Hpy188I TCNGA 6 cut(s) 312, 353, 427, 492, 550, 666
Hpy188III TCNNGA 7 cut(s) 143, 254, 344, 608, 748, 823, 987
Hpy8I GTNNAC 4 cut(s) 157, 193, 778, 787
Hpy99I CGWCG 6 cut(s) 52, 116, 158, 161, 194, 197
HpyAV CCTTC 3 cut(s) 196, 262, 874
HpyCH4III ACNGT 6 cut(s) 487, 595, 784, 1012, 1039, 1075
HpyCH4IV ACGT 3 cut(s) 290, 895, 933
HpyCH4V TGCA 5 cut(s) 386, 413, 683, 744, 1146
HpyF10VI GCNNNNNNNGC 3 cut(s) 440, 920, 985
HpyF3I CTNAG 5 cut(s) 67, 424, 435, 549, 840
HpySE526I ACGT 3 cut(s) 290, 895, 933
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 9 cut(s) 124, 130, 169, 407, 586, 739, 763, 914, 1072
HspAI GCGC 3 cut(s) 213, 1079, 1177
Kzo9I GATC 4 cut(s) 139, 271, 983, 989
LmnI GCTCC 3 cut(s) 353, 766, 877
Lsp1109I GCAGC 1 cut(s) 728
LweI GCATC 5 cut(s) 670, 753, 847, 1133, 1164
MaeI CTAG 1 cut(s) 275
MaeII ACGT 3 cut(s) 290, 895, 933
MaeIII GTNAC 2 cut(s) 481, 802
MalI GATC 4 cut(s) 141, 273, 985, 991
MboI GATC 4 cut(s) 139, 271, 983, 989
MboII GAAGA 5 cut(s) 98, 269, 518, 707, 1037
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 3 cut(s) 47, 177, 425
MluCI AATT 7 cut(s) 37, 366, 540, 633, 707, 798, 956
MlyI GAGTC 6 cut(s) 67, 125, 155, 224, 841, 1061
MmeI TCCRAC 2 cut(s) 331, 1042
MnlI CCTC 5 cut(s) 172, 432, 608, 670, 780
MseI TTAA 1 cut(s) 879
MslI CAYNNNNRTG 3 cut(s) 125, 408, 1073
MspI CCGG 2 cut(s) 521, 644
MspR9I CCNGG 2 cut(s) 78, 852
MvaI CCWGG 2 cut(s) 78, 852
MvnI CGCG 1 cut(s) 988
MwoI GCNNNNNNNGC 3 cut(s) 440, 920, 985
NcoI CCATGG 1 cut(s) 165
NdeII GATC 4 cut(s) 139, 271, 983, 989
NlaIII CATG 9 cut(s) 124, 130, 169, 407, 586, 739, 763, 914, 1072
NlaIV GGNNCC 3 cut(s) 397, 768, 1066
NruI TCGCGA 1 cut(s) 988
NspI RCATGY 2 cut(s) 407, 586
NspV TTCGAA 1 cut(s) 84
PciI ACATGT 1 cut(s) 582
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 252
PfeI GAWTC 1 cut(s) 1093
PfoI TCCNGGA 1 cut(s) 850
PkrI GCNGC 1 cut(s) 743
PleI GAGTC 6 cut(s) 67, 124, 155, 224, 841, 1060
PpsI GAGTC 6 cut(s) 67, 124, 155, 224, 841, 1060
PscI ACATGT 1 cut(s) 582
Psp6I CCWGG 2 cut(s) 76, 850
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 2 cut(s) 76, 850
PspN4I GGNNCC 3 cut(s) 397, 768, 1066
PspPI GGNCC 2 cut(s) 58, 977
PsuI RGATCY 1 cut(s) 271
RruI TCGCGA 1 cut(s) 988
RsaI GTAC 2 cut(s) 689, 1019
RsaNI GTAC 2 cut(s) 688, 1018
RseI CAYNNNNRTG 3 cut(s) 125, 408, 1073
SalI GTCGAC 2 cut(s) 155, 191
SaqAI TTAA 1 cut(s) 879
SatI GCNGC 1 cut(s) 742
Sau3AI GATC 4 cut(s) 139, 271, 983, 989
Sau96I GGNCC 2 cut(s) 58, 977
SchI GAGTC 6 cut(s) 67, 125, 155, 224, 841, 1061
ScrFI CCNGG 2 cut(s) 78, 852
SduI GDGCHC 3 cut(s) 47, 177, 425
SfaNI GCATC 5 cut(s) 670, 753, 847, 1133, 1164
SfuI TTCGAA 1 cut(s) 84
SgrDI CGTCGACG 2 cut(s) 155, 191
SmiMI CAYNNNNRTG 3 cut(s) 125, 408, 1073
SmlI CTYRAG 4 cut(s) 512, 821, 1118, 1153
SmoI CTYRAG 4 cut(s) 512, 821, 1118, 1153
Sse9I AATT 7 cut(s) 37, 366, 540, 633, 707, 798, 956
SspI AATATT 1 cut(s) 1166
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 2 cut(s) 76, 850
StyI CCWWGG 2 cut(s) 61, 165
TaaI ACNGT 6 cut(s) 487, 595, 784, 1012, 1039, 1075
TaiI ACGT 3 cut(s) 293, 898, 936
TaqI TCGA 7 cut(s) 47, 84, 144, 156, 192, 228, 1055
TasI AATT 7 cut(s) 37, 366, 540, 633, 707, 798, 956
TatI WGTACW 2 cut(s) 687, 1017
TfiI GAWTC 1 cut(s) 1093
Tru1I TTAA 1 cut(s) 879
Tru9I TTAA 1 cut(s) 879
TscAI CASTG 1 cut(s) 1153
TseI GCWGC 1 cut(s) 741
TspDTI ATGAA 3 cut(s) 895, 899, 1116
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 1 cut(s) 1153
XapI RAATTY 3 cut(s) 366, 633, 707
XceI RCATGY 2 cut(s) 407, 586
XmiI GTMKAC 2 cut(s) 156, 192
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.