Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008498

Physical Location & Seq

Genomic Coordinates Reverse (-)

2440743 .. 2442849

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0030400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCTTCTACGAAGCTCATCGTCGCCGATACTAAACTCATGGCTCCCCCACTCCAAAGACTCGGGTCTCGGGTCGTCCTCCTCGCCCGAACCCGAAATGGTGCCCCAAATCCCCCGAACCTGCGCCATTTCCCTCAGGTCTCCTCTTTCCGTATCTCGTAAAACAAACCAACACCTGATCACTCTCACGCGCGCCCGCTCCGACGCCGATCTCGGCGGCAGCCACCAGCGGAGGCCGCCGTTCGCGAACACGTTGAGCGGGTTCGAGGAGAGAGGAGGAGGAGGAGTGAGGAGGACGATGTCGTTGGGGTTGGCGGAGGTGGAGGGGTGTGAGATGGGGACGAGAGAGAATATCGGGTTGTTGAGCGGTTTGGTTGGGGGTGGGGACGGCGGAGGCAAGATCTGCGGACGAGGTGGCGGCGGATCGGACGGTGGTGACGAATCGGATCGGGGAAGCGCGATCGCCGAGACGCATTATCGGAATATGATCGAGGCTGATCCCGGAAATCCTCTGCTTCTTAGCAACTATGCTAAGTTTCTCAAAGAGGTTGTTGGGAATTTAGAGAAAGCAGAAGAGTACTGTGGGAGAGCAATCTTGGCTAACCCAAACGATGGAAATGTTTTATCCATGTATGCGGATTTGGTATGGCAAATTCACAAGGATGCTGCCAGAGCCGAGACTTATTTTGATCAAGCTGTTAAAGCTTCACCTGATGATTGTTATGTTCAAGCATCATATGCTCATTTCCTTTGGGATTCTGAGGAAGACGAAGATGAGGAGGAGGAGAAGGAGGTGAAAGAAGAAGGCAGCAACCGAGCACCAGCACACAAGTTGGTTCACGGAGTTCCCCCTTCCCCGCCTCCGTTAGCTGCTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04068 ko04922 map04068 map04922

Pfam Domains

Protein Families

Methyltransf_25 PrmA

Protein Analysis

293

Amino Acids

31.26

Weight (kDa)

5.05

Isoelectric Point (pI)

64.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_TmcB	PF25474	153 - 197	4.5e-06	TmcB, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19670 AT4G29510
fragaria_vesca	FvH4_1g06990 FvH4_1g06990 FvH4_1g06990
malus_domestica	MD02G1074300.v1.1 MD15G1203800.v1.1
prunus_persica	Prupe.7G213600_v2.0.a1 Prupe.7G213600_v2.0.a1 Prupe.7G213600_v2.0.a1
pyrus_communis	pycom02g05870 pycom15g18060
rosa_chinensis	RchiOBHm_Chr2g0092941
rosa_laevigata	RLG00000016351
rosa_multiflora	Rmu_sc0000965.1_g000015
rosa_roxburghii	Rroxscaffold_2G00148690
rosa_rugosa	Rorug02G0030400 Rorug02G0030500
rosa_samantha	Rh2AG076500 Rh2BG077800 Rh2CG080000 Rh2DG075100
rosa_wichuraiana	Rw2G006970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	100
AccB7I	CCANNNNNTGG	1 cut(s)	611
AccBSI	CCGCTC	3 cut(s)	198, 258, 366
AccII	CGCG	4 cut(s)	190, 192, 245, 458
AclWI	GGATC	3 cut(s)	430, 453, 491
AcsI	RAATTY	2 cut(s)	556, 651
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	578
AfiI	CCNNNNNNNGG	1 cut(s)	611
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	728
AluBI	AGCT	4 cut(s)	15, 695, 704, 869
AluI	AGCT	4 cut(s)	15, 695, 704, 869
Alw21I	GWGCWC	1 cut(s)	820
Alw26I	GTCTC	4 cut(s)	71, 144, 461, 671
AlwI	GGATC	3 cut(s)	430, 453, 491
Ama87I	CYCGRG	2 cut(s)	61, 68
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	6 cut(s)	219, 665, 807, 869, 872, 875
ApoI	RAATTY	2 cut(s)	556, 651
AsiSI	GCGATCGC	1 cut(s)	462
AspLEI	GCGC	4 cut(s)	125, 192, 194, 458
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	3 cut(s)	446, 699, 805
AvaI	CYCGRG	2 cut(s)	61, 68
AxyI	CCTNAGG	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	105
BanI	GGYRCC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	771
Bbv12I	GWGCWC	1 cut(s)	820
BbvI	GCAGC	6 cut(s)	231, 652, 819, 856, 859, 862
BccI	CCATC	2 cut(s)	328, 605
BceAI	ACGGC	2 cut(s)	223, 403
BclI	TGATCA	2 cut(s)	177, 688
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	4 cut(s)	71, 144, 461, 671
BfuAI	ACCTGC	1 cut(s)	128
BglII	AGATCT	1 cut(s)	399
BisI	GCNGC	9 cut(s)	217, 220, 236, 418, 666, 808, 870, 873, 876
BlsI	GCNGC	9 cut(s)	218, 221, 237, 419, 667, 809, 871, 874, 877
BmcAI	AGTACT	1 cut(s)	578
Bme1390I	CCNGG	1 cut(s)	501
BmeT110I	CYCGRG	2 cut(s)	61, 68
BmiI	GGNNCC	2 cut(s)	44, 102
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	2 cut(s)	652, 740
BoxI	GACNNNNGTC	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	771
BpuMI	CCSGG	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	204
BsaI	GGTCTC	2 cut(s)	71, 144
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse21I	CCTNAGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseMII	CTCAG	2 cut(s)	148, 750
BsePI	GCGCGC	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	6 cut(s)	231, 652, 819, 856, 859, 862
Bsh1236I	CGCG	4 cut(s)	190, 192, 245, 458
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	235
BshNI	GGYRCC	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	820
BsiHKCI	CYCGRG	2 cut(s)	61, 68
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	2 cut(s)	352, 398
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	4 cut(s)	71, 144, 461, 671
BsmBI	CGTCTC	1 cut(s)	461
BsmFI	GGGAC	2 cut(s)	352, 398
BsnI	GGCC	1 cut(s)	235
Bso31I	GGTCTC	2 cut(s)	71, 144
BsoBI	CYCGRG	2 cut(s)	61, 68
Bsp1286I	GDGCHC	2 cut(s)	105, 820
Bsp143I	GATC	9 cut(s)	177, 208, 399, 422, 445, 459, 486, 496, 688
Bsp68I	TCGCGA	1 cut(s)	245
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	2 cut(s)	147, 751
BspFNI	CGCG	4 cut(s)	190, 192, 245, 458
BspLI	GGNNCC	2 cut(s)	44, 102
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	3 cut(s)	430, 453, 491
BspT107I	GGYRCC	1 cut(s)	100
BspTNI	GGTCTC	2 cut(s)	71, 144
BsrBI	CCGCTC	3 cut(s)	198, 258, 366
BssHII	GCGCGC	1 cut(s)	190
BssMI	GATC	9 cut(s)	177, 208, 399, 422, 445, 459, 486, 496, 688
BssNI	GRCGYC	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	431, 581
Bst6I	CTCTTC	1 cut(s)	567
BstACI	GRCGYC	1 cut(s)	204
BstAPI	GCANNNNNTGC	2 cut(s)	402, 737
BstC8I	GCNNGC	2 cut(s)	192, 196
BstDEI	CTNAG	5 cut(s)	134, 518, 531, 759, 879
BstF5I	GGATG	1 cut(s)	667
BstFNI	CGCG	4 cut(s)	190, 192, 245, 458
BstHHI	GCGC	4 cut(s)	125, 192, 194, 458
BstKTI	GATC	9 cut(s)	180, 211, 402, 425, 448, 462, 489, 499, 691
BstMAI	GTCTC	4 cut(s)	71, 144, 461, 671
BstMBI	GATC	9 cut(s)	177, 208, 399, 422, 445, 459, 486, 496, 688
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	7 cut(s)	235, 402, 596, 671, 701, 737, 875
BstPAI	GACNNNNGTC	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	499
BstSLI	GKGCMC	1 cut(s)	105
BstUI	CGCG	4 cut(s)	190, 192, 245, 458
BstV1I	GCAGC	6 cut(s)	231, 652, 819, 856, 859, 862
BstV2I	GAAGAC	1 cut(s)	771
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
Bsu36I	CCTNAGG	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	667
BtuMI	TCGCGA	1 cut(s)	245
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	192, 196
CfoI	GCGC	4 cut(s)	125, 192, 194, 458
CseI	GACGC	2 cut(s)	212, 478
Csp6I	GTAC	1 cut(s)	577
CviAII	CATG	2 cut(s)	39, 628
CviQI	GTAC	1 cut(s)	577
DdeI	CTNAG	5 cut(s)	134, 518, 531, 759, 879
DpnI	GATC	9 cut(s)	179, 210, 401, 424, 447, 461, 488, 498, 690
DpnII	GATC	9 cut(s)	177, 208, 399, 422, 445, 459, 486, 496, 688
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
EciI	GGCGGA	3 cut(s)	329, 405, 435
Eco31I	GGTCTC	2 cut(s)	71, 144
Eco81I	CCTNAGG	1 cut(s)	134
Eco88I	CYCGRG	2 cut(s)	61, 68
Esp3I	CGTCTC	1 cut(s)	461
FaeI	CATG	2 cut(s)	42, 631
FaiI	YATR	9 cut(s)	40, 485, 528, 629, 633, 646, 723, 736, 738
FaqI	GGGAC	2 cut(s)	352, 398
FatI	CATG	2 cut(s)	38, 627
FauI	CCCGC	3 cut(s)	203, 251, 864
FauNDI	CATATG	1 cut(s)	736
FbaI	TGATCA	2 cut(s)	177, 688
Fnu4HI	GCNGC	9 cut(s)	217, 220, 236, 418, 666, 808, 870, 873, 876
FokI	GGATG	1 cut(s)	674
Fsp4HI	GCNGC	9 cut(s)	217, 220, 236, 418, 666, 808, 870, 873, 876
GlaI	GCGC	4 cut(s)	124, 191, 193, 457
GluI	GCNGC	9 cut(s)	217, 220, 236, 418, 666, 808, 870, 873, 876
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	501
HgaI	GACGC	2 cut(s)	212, 478
HhaI	GCGC	4 cut(s)	125, 192, 194, 458
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	42, 631
Hin6I	GCGC	4 cut(s)	123, 190, 192, 456
HinP1I	GCGC	4 cut(s)	123, 190, 192, 456
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	3 cut(s)	59, 440, 755
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	3 cut(s)	446, 699, 805
Hpy166II	GTNNAC	1 cut(s)	838
Hpy188I	TCNGA	5 cut(s)	202, 427, 445, 480, 760
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	838
Hpy99I	CGWCG	2 cut(s)	25, 206
HpyAV	CCTTC	3 cut(s)	781, 797, 861
HpyCH4III	ACNGT	2 cut(s)	431, 581
HpyCH4IV	ACGT	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	7 cut(s)	235, 402, 596, 671, 701, 737, 875
HpyF3I	CTNAG	5 cut(s)	134, 518, 531, 759, 879
HpySE526I	ACGT	1 cut(s)	251
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	42, 631
HspAI	GCGC	4 cut(s)	123, 190, 192, 456
Ksp22I	TGATCA	2 cut(s)	177, 688
Kzo9I	GATC	9 cut(s)	177, 208, 399, 422, 445, 459, 486, 496, 688
LmnI	GCTCC	2 cut(s)	48, 203
LpnPI	CCDG	8 cut(s)	121, 133, 188, 239, 514, 682, 723, 834
Lsp1109I	GCAGC	6 cut(s)	231, 652, 819, 856, 859, 862
LweI	GCATC	2 cut(s)	652, 740
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	9 cut(s)	179, 210, 401, 424, 447, 461, 488, 498, 690
MbiI	CCGCTC	3 cut(s)	198, 258, 366
MboI	GATC	9 cut(s)	177, 208, 399, 422, 445, 459, 486, 496, 688
MboII	GAAGA	4 cut(s)	584, 776, 782, 812
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	2 cut(s)	105, 820
MluCI	AATT	2 cut(s)	556, 651
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	225
MseI	TTAA	1 cut(s)	699
MslI	CAYNNNNRTG	1 cut(s)	660
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	1 cut(s)	501
MvnI	CGCG	4 cut(s)	190, 192, 245, 458
MwoI	GCNNNNNNNGC	7 cut(s)	235, 402, 596, 671, 701, 737, 875
NciI	CCSGG	1 cut(s)	501
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	9 cut(s)	177, 208, 399, 422, 445, 459, 486, 496, 688
NlaIII	CATG	2 cut(s)	42, 631
NlaIV	GGNNCC	2 cut(s)	44, 102
NmeAIII	GCCGAG	3 cut(s)	192, 490, 700
NmuCI	GTSAC	1 cut(s)	434
NruI	TCGCGA	1 cut(s)	245
PauI	GCGCGC	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	440, 755
PflFI	GACNNNGTC	1 cut(s)	298
PflMI	CCANNNNNTGG	1 cut(s)	611
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	9 cut(s)	218, 221, 237, 419, 667, 809, 871, 874, 877
Ple19I	CGATCG	1 cut(s)	462
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PshAI	GACNNNNGTC	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	44, 102
PsuI	RGATCY	1 cut(s)	399
PsyI	GACNNNGTC	1 cut(s)	298
PteI	GCGCGC	1 cut(s)	190
PvuI	CGATCG	1 cut(s)	462
RgaI	GCGATCGC	1 cut(s)	462
RruI	TCGCGA	1 cut(s)	245
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
RseI	CAYNNNNRTG	1 cut(s)	660
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	9 cut(s)	217, 220, 236, 418, 666, 808, 870, 873, 876
Sau3AI	GATC	9 cut(s)	177, 208, 399, 422, 445, 459, 486, 496, 688
ScaI	AGTACT	1 cut(s)	578
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	105, 820
SfaAI	GCGATCGC	1 cut(s)	462
SfaNI	GCATC	2 cut(s)	652, 740
SgfI	GCGATCGC	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	660
Sse9I	AATT	2 cut(s)	556, 651
StyD4I	CCNGG	1 cut(s)	499
TaaI	ACNGT	2 cut(s)	431, 581
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	264, 489
TasI	AATT	2 cut(s)	556, 651
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	3 cut(s)	219, 238, 420
TfiI	GAWTC	2 cut(s)	440, 755
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	6 cut(s)	219, 665, 807, 869, 872, 875
Tsp45I	GTSAC	1 cut(s)	434
TspGWI	ACGGA	3 cut(s)	139, 852, 855
Tth111I	GACNNNGTC	1 cut(s)	298
Van91I	CCANNNNNTGG	1 cut(s)	611
XapI	RAATTY	2 cut(s)	556, 651
ZrmI	AGTACT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.