Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009958

Physical Location & Seq

Genomic Coordinates Forward (+)

8575785 .. 8578002

Gene Structure 2218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1770 bp

ATGTACTGTAACTTAACAAGAAGCCAAGGCTTTCCAATGGCGATTAGGGTTTCATTACAACAAACAACAATCAAAAGTTGTCTCCAGTTCTCAAAGTCTTCGTATTTACCAGTTAAGTTTCATTTAAACCCTAAAGGAAGCACCTTTGCACATGTTTCGACTGGTTTAGTTAGTTCTCGTCTTAATTCTATGAAGATTAGAATGTTGAGGAACCCTGAAGGTGTTAGAGAGTTTTCGAGTTTTGATTCGCAGAGATTTGGGAAACGAAGTAGTAGTAATAGTAGTAGAGGGAAGTCAGGATTAGGATCGAAAGCTTACCGAGATAAGAGAAGTGGCGGTAGTGGCCGTTCTAGTGGAGATTCAATTTGGGTGAAGTCTGATGAGAAACCAGTGGAAGAAAGGTTTCAGAGAGGTGATAGACCTTCTTGGGAGAAACGAGATGGTAGAAATGATTCAGGTTCTGATAGGAGAAGTAGATCCAGAGGTTATGGTGAGACGAGGAATCGAGATTCTTTTCGTGGTCGAAGAGATGATAGAATCAGTGAAGTGGAAGAAGAGAGTAAGAAAGGTGGAGGGAATTCAATTTGGGTGGCTAATGATGATAAACCGGCGAAAGAGCAATCGCCGAGAGTTAACAACCGGTCATCTTGGGATGATAGAACAAGAAATCAGAACTCTTTTAGTGCCCGAGGTGATGATAGAATCACTGAAGAAGCAGAAGAGGAAACAATGAATCATGCCCCTGAAGATGGTGATGGAATCGTTGAAGAAGAACCAGATAATACTAGGTGGTCTGAGATCAAAAATAGATTCAATAGGTATGATGTAAGAGATCAAGGGCGTGACGATGCAGCTTATCGAAACTGGAATAGGCAAGAGAGCTGGGGTAGGAAAACATGGCAAGAGGCGACTGAGTCCAGTGTGCCTAGGCTGGAAGGTGAAGTGGTTTATGGAGTAAGTCCAGTGTTGGCTGCACTCTCTGTTGGGAGACGAGAGTTCTATGCTCTCTATGTTCAAGAAGGTTTAGATTTGAGCAGTAACAATAGGAAGAAGAAAGACAAGAAAGGCTTCGAGAGAGTTTTGAAAATCTCTGAAAAACTTGGGTTAAACATCAAGGAAACTTCGAAGCATGATCTTAACATGGTCGCTGATAACAGACCACATCAAGGATTGGTGCTTGATGCTTCTCCATTAGAATTGGTGAAAGTGAAAGAACTAGATCCGATTTCATCAGAGGAAGAGAAATATTCTCTCTGGGTAGCTCTTGATGAGGTCACTGATCCACAGAACTTAGGCGCGATCATAAGATCTGCTTACTTTTTTGGAGCCACGGGTGTTGTGGTATGCGCTAAAAACTCAGCTCCATTAAGTGCAGTTGTGAGTAAAGCAAGCGCTGGATCACTCGAAGTAATGGAACTCAGGTACTGCAAAAACATGATGCAGTTTTTGGAAGCTTCTGCTGAGAACGGCTGGCGTGTGGTTGGTGGTTCGGTATCACCAAAGGCTGTTGCTTTGAACGAGGTTTTACCTGGCAGCCCAACAATTCTTGTCTTGGGTAATGAAGGAACGGGTTTAAGGCCATTAGTAGAGCGATCATGTACCGATTTAGTGAGGATTAGTGGTAATATGCCCAACGAAGTTGCAGTAACAGAGTCTGATGATGCGGAAGGTGAAGGTTTCAGATCATTTCTTGCTGTGGAGAGCTTGAACGTGAGTGTTGCAGCTGGTTTGTTTCTTCATCACTTAATAGGCAACAAAGCAAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070039 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase SpoU_sub_bind

Protein Analysis

589

Amino Acids

65.56

Weight (kDa)

8.57

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SpoU_sub_bind	PF08032	315 - 399	1.3e-09	RNA 2'-O ribose methyltransferase substrate binding
SpoU_methylase	PF00588	418 - 541	3.6e-25	SpoU rRNA Methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19870
fragaria_vesca	FvH4_1g06150 FvH4_1g06190
malus_domestica	MD02G1065700.v1.1 MD15G1196600.v1.1
prunus_persica	Prupe.7G219800_v2.0.a1 Prupe.7G219800_v2.0.a1
pyrus_communis	pycom02g05180 pycom02g05220 pycom15g17570
rosa_chinensis	RchiOBHm_Chr2g0091911
rosa_laevigata	RLG00000016260
rosa_multiflora	Rmu_sc0031557.1_g000002 Rmu_sc0031558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149620
rosa_rugosa	Rorug02G0021600
rosa_samantha	Rh2AG067200 Rh2BG066400 Rh2CG067700 Rh2DG066300
rosa_wichuraiana	Rw2G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1298
AciI	CCGC	2 cut(s)	336, 1664
AclWI	GGATC	5 cut(s)	313, 471, 1214, 1274, 1405
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	3 cut(s)	237, 729, 765
AfaI	GTAC	3 cut(s)	5, 1424, 1600
AfeI	AGCGCT	1 cut(s)	1393
AfiI	CCNNNNNNNGG	2 cut(s)	749, 1166
AflIII	ACRYGT	1 cut(s)	151
AgeI	ACCGGT	1 cut(s)	639
AgsI	TTSAA	8 cut(s)	363, 582, 767, 814, 1016, 1084, 1516, 1708
AjnI	CCWGG	1 cut(s)	1528
AluBI	AGCT	8 cut(s)	314, 854, 882, 1262, 1361, 1454, 1704, 1724
AluI	AGCT	8 cut(s)	314, 854, 882, 1262, 1361, 1454, 1704, 1724
Alw26I	GTCTC	3 cut(s)	86, 488, 982
AlwI	GGATC	5 cut(s)	313, 471, 1214, 1274, 1405
AlwNI	CAGNNNCTG	3 cut(s)	461, 1425, 1655
Ama87I	CYCGRG	1 cut(s)	687
Aor51HI	AGCGCT	1 cut(s)	1393
AoxI	GGCC	2 cut(s)	343, 1577
ApeKI	GCWGC	4 cut(s)	851, 971, 1533, 1721
ApoI	RAATTY	1 cut(s)	577
AsiGI	ACCGGT	1 cut(s)	639
Asp700I	GAANNNNTTC	3 cut(s)	402, 451, 1067
AspA2I	CCTAGG	1 cut(s)	926
AspLEI	GCGC	3 cut(s)	1298, 1349, 1394
AsuHPI	GGTGA	9 cut(s)	382, 425, 503, 704, 764, 950, 1213, 1488, 1682
AsuII	TTCGAA	1 cut(s)	1124
AvaI	CYCGRG	1 cut(s)	687
AvrII	CCTAGG	1 cut(s)	926
BaeGI	GKGCMC	1 cut(s)	688
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	4 cut(s)	863, 958, 1545, 1733
BccI	CCATC	3 cut(s)	434, 743, 749
BceAI	ACGGC	2 cut(s)	330, 1483
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BciT130I	CCWGG	1 cut(s)	1530
BcoDI	GTCTC	3 cut(s)	86, 488, 982
BfaI	CTAG	4 cut(s)	351, 786, 927, 1217
BfoI	RGCGCY	1 cut(s)	1395
BglII	AGATCT	1 cut(s)	1307
BisI	GCNGC	4 cut(s)	852, 972, 1534, 1722
BlnI	CCTAGG	1 cut(s)	926
BlsI	GCNGC	4 cut(s)	853, 973, 1535, 1723
Bme1390I	CCNGG	1 cut(s)	1530
BmeT110I	CYCGRG	1 cut(s)	687
BmiI	GGNNCC	2 cut(s)	212, 1327
BmrFI	CCNGG	1 cut(s)	1530
BmsI	GCATC	4 cut(s)	838, 1171, 1428, 1651
BpiI	GAAGAC	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	1124
BsaBI	GATNNNNATC	1 cut(s)	304
BsaJI	CCNNGG	4 cut(s)	25, 688, 926, 1329
BsaWI	WCCGGW	1 cut(s)	639
Bsc4I	CCNNNNNNNGG	2 cut(s)	749, 1166
Bse118I	RCCGGY	2 cut(s)	607, 639
Bse1I	ACTGG	7 cut(s)	85, 110, 166, 389, 869, 918, 962
Bse8I	GATNNNNATC	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	1530
BseDI	CCNNGG	4 cut(s)	25, 688, 926, 1329
BseGI	GGATG	1 cut(s)	658
BseJI	GATNNNNATC	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	749, 1166
BseMII	CTCAG	5 cut(s)	786, 903, 1371, 1432, 1452
BseNI	ACTGG	7 cut(s)	85, 110, 166, 389, 869, 918, 962
BseSI	GKGCMC	1 cut(s)	688
BseXI	GCAGC	4 cut(s)	863, 958, 1545, 1733
BseYI	CCCAGC	1 cut(s)	882
BsgI	GTGCAG	2 cut(s)	957, 1392
Bsh1236I	CGCG	1 cut(s)	1298
BshFI	GGCC	2 cut(s)	345, 1579
BshTI	ACCGGT	1 cut(s)	639
BsiHKCI	CYCGRG	1 cut(s)	687
BsiSI	CCGG	2 cut(s)	608, 640
BslI	CCNNNNNNNGG	2 cut(s)	749, 1166
BsmAI	GTCTC	3 cut(s)	86, 488, 982
BsmBI	CGTCTC	2 cut(s)	488, 982
BsnI	GGCC	2 cut(s)	345, 1579
BsoBI	CYCGRG	1 cut(s)	687
Bsp119I	TTCGAA	1 cut(s)	1124
Bsp1286I	GDGCHC	1 cut(s)	688
BspACI	CCGC	2 cut(s)	336, 1664
BspANI	GGCC	2 cut(s)	345, 1579
BspCNI	CTCAG	5 cut(s)	787, 904, 1370, 1431, 1453
BspFNI	CGCG	1 cut(s)	1298
BspLI	GGNNCC	2 cut(s)	212, 1327
BspPI	GGATC	5 cut(s)	313, 471, 1214, 1274, 1405
BspT104I	TTCGAA	1 cut(s)	1124
BsrFI	RCCGGY	2 cut(s)	607, 639
BsrI	ACTGG	7 cut(s)	85, 110, 166, 389, 869, 918, 962
BssAI	RCCGGY	2 cut(s)	607, 639
BssECI	CCNNGG	4 cut(s)	25, 688, 926, 1329
BssT1I	CCWWGG	2 cut(s)	25, 926
Bst2UI	CCWGG	1 cut(s)	1530
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	4 cut(s)	520, 549, 714, 1233
BstBI	TTCGAA	1 cut(s)	1124
BstC8I	GCNNGC	2 cut(s)	1390, 1472
BstDEI	CTNAG	6 cut(s)	795, 912, 1291, 1357, 1418, 1461
BstDSI	CCRYGG	1 cut(s)	1329
BstF5I	GGATG	1 cut(s)	658
BstFNI	CGCG	1 cut(s)	1298
BstH2I	RGCGCY	1 cut(s)	1395
BstHHI	GCGC	3 cut(s)	1298, 1349, 1394
BstMAI	GTCTC	3 cut(s)	86, 488, 982
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstNI	CCWGG	1 cut(s)	1530
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	1528
BstSLI	GKGCMC	1 cut(s)	688
BstUI	CGCG	1 cut(s)	1298
BstV1I	GCAGC	4 cut(s)	863, 958, 1545, 1733
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	3 cut(s)	476, 1219, 1307
BstYI	RGATCY	3 cut(s)	476, 1219, 1307
BsuRI	GGCC	2 cut(s)	345, 1579
BtgI	CCRYGG	1 cut(s)	1329
BtsCI	GGATG	1 cut(s)	658
BtsIMutI	CAGTG	6 cut(s)	396, 547, 705, 925, 969, 1275
Cac8I	GCNNGC	2 cut(s)	1390, 1472
CaiI	CAGNNNCTG	3 cut(s)	461, 1425, 1655
CfoI	GCGC	3 cut(s)	1298, 1349, 1394
Cfr10I	RCCGGY	2 cut(s)	607, 639
Csp6I	GTAC	3 cut(s)	4, 1423, 1599
CspAI	ACCGGT	1 cut(s)	639
CspCI	CAANNNNNGTGG	4 cut(s)	570, 605, 1318, 1353
CviAII	CATG	7 cut(s)	152, 737, 897, 1130, 1141, 1435, 1596
CviQI	GTAC	3 cut(s)	4, 1423, 1599
DdeI	CTNAG	6 cut(s)	795, 912, 1291, 1357, 1418, 1461
DraI	TTTAAA	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	4 cut(s)	520, 549, 714, 1233
EarI	CTCTTC	4 cut(s)	520, 549, 714, 1233
Eco130I	CCWWGG	2 cut(s)	25, 926
Eco47III	AGCGCT	1 cut(s)	1393
Eco57I	CTGAAG	3 cut(s)	237, 729, 765
Eco88I	CYCGRG	1 cut(s)	687
EcoRI	GAATTC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	1528
EcoT14I	CCWWGG	2 cut(s)	25, 926
ErhI	CCWWGG	2 cut(s)	25, 926
Esp3I	CGTCTC	2 cut(s)	488, 982
FaeI	CATG	7 cut(s)	155, 740, 900, 1133, 1144, 1438, 1599
FalI	AAGNNNNNCTT	4 cut(s)	1052, 1084, 1297, 1329
FatI	CATG	7 cut(s)	151, 736, 896, 1129, 1140, 1434, 1595
Fnu4HI	GCNGC	4 cut(s)	852, 972, 1534, 1722
FokI	GGATG	1 cut(s)	665
Fsp4HI	GCNGC	4 cut(s)	852, 972, 1534, 1722
FspBI	CTAG	4 cut(s)	351, 786, 927, 1217
GlaI	GCGC	3 cut(s)	1297, 1348, 1393
GluI	GCNGC	4 cut(s)	852, 972, 1534, 1722
GsaI	CCCAGC	1 cut(s)	886
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	1395
HaeIII	GGCC	2 cut(s)	345, 1579
HapII	CCGG	2 cut(s)	608, 640
HhaI	GCGC	3 cut(s)	1298, 1349, 1394
Hin1II	CATG	7 cut(s)	155, 740, 900, 1133, 1144, 1438, 1599
Hin6I	GCGC	3 cut(s)	1296, 1347, 1392
HinP1I	GCGC	3 cut(s)	1296, 1347, 1392
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	2 cut(s)	312, 1452
HpaI	GTTAAC	1 cut(s)	634
HpaII	CCGG	2 cut(s)	608, 640
HphI	GGTGA	9 cut(s)	382, 425, 503, 704, 764, 950, 1213, 1488, 1682
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188III	TCNNGA	6 cut(s)	297, 480, 506, 1016, 1072, 1265
Hpy8I	GTNNAC	1 cut(s)	634
HpyAV	CCTTC	7 cut(s)	212, 432, 929, 1013, 1556, 1661, 1667
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	1710
HpyCH4V	TGCA	8 cut(s)	149, 851, 974, 1373, 1428, 1441, 1643, 1721
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	6 cut(s)	795, 912, 1291, 1357, 1418, 1461
HpySE526I	ACGT	1 cut(s)	1710
Hsp92II	CATG	7 cut(s)	155, 740, 900, 1133, 1144, 1438, 1599
HspAI	GCGC	3 cut(s)	1296, 1347, 1392
KspAI	GTTAAC	1 cut(s)	634
LmnI	GCTCC	2 cut(s)	1325, 1366
Lsp1109I	GCAGC	4 cut(s)	863, 958, 1545, 1733
LweI	GCATC	4 cut(s)	838, 1171, 1428, 1651
MaeI	CTAG	4 cut(s)	351, 786, 927, 1217
MaeII	ACGT	1 cut(s)	1710
MaeIII	GTNAC	5 cut(s)	8, 842, 1037, 1273, 1645
MflI	RGATCY	3 cut(s)	476, 1219, 1307
MhlI	GDGCHC	1 cut(s)	688
MluCI	AATT	6 cut(s)	184, 363, 577, 582, 1196, 1542
MlyI	GAGTC	2 cut(s)	923, 1661
MroXI	GAANNNNTTC	3 cut(s)	402, 451, 1067
MspA1I	CMGCKG	1 cut(s)	1724
MspI	CCGG	2 cut(s)	608, 640
MspR9I	CCNGG	1 cut(s)	1530
MvaI	CCWGG	1 cut(s)	1530
MvnI	CGCG	1 cut(s)	1298
MwoI	GCNNNNNNNGC	1 cut(s)	342
NlaIII	CATG	7 cut(s)	155, 740, 900, 1133, 1144, 1438, 1599
NlaIV	GGNNCC	2 cut(s)	212, 1327
NmeAIII	GCCGAG	1 cut(s)	651
NmuCI	GTSAC	2 cut(s)	842, 1273
NspI	RCATGY	1 cut(s)	155
NspV	TTCGAA	1 cut(s)	1124
PciI	ACATGT	1 cut(s)	151
PdmI	GAANNNNTTC	3 cut(s)	402, 451, 1067
PflFI	GACNNNGTC	1 cut(s)	913
PinAI	ACCGGT	1 cut(s)	639
PkrI	GCNGC	4 cut(s)	853, 973, 1535, 1723
PleI	GAGTC	2 cut(s)	922, 1660
PpsI	GAGTC	2 cut(s)	922, 1660
PscI	ACATGT	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	1528
PspFI	CCCAGC	1 cut(s)	882
PspGI	CCWGG	1 cut(s)	1528
PspN4I	GGNNCC	2 cut(s)	212, 1327
PsrI	GAACNNNNNNTAC	2 cut(s)	331, 363
PstNI	CAGNNNCTG	3 cut(s)	461, 1425, 1655
PsuI	RGATCY	3 cut(s)	476, 1219, 1307
PsyI	GACNNNGTC	1 cut(s)	913
PvuII	CAGCTG	1 cut(s)	1724
RsaI	GTAC	3 cut(s)	5, 1424, 1600
RsaNI	GTAC	3 cut(s)	4, 1423, 1599
SatI	GCNGC	4 cut(s)	852, 972, 1534, 1722
SchI	GAGTC	2 cut(s)	923, 1661
ScrFI	CCNGG	1 cut(s)	1530
SduI	GDGCHC	1 cut(s)	688
SfaNI	GCATC	4 cut(s)	838, 1171, 1428, 1651
SfuI	TTCGAA	1 cut(s)	1124
Sse9I	AATT	6 cut(s)	184, 363, 577, 582, 1196, 1542
SsiI	CCGC	2 cut(s)	336, 1664
SspI	AATATT	1 cut(s)	1247
SspMI	CTAG	4 cut(s)	351, 786, 927, 1217
StyD4I	CCNGG	1 cut(s)	1528
StyI	CCWWGG	2 cut(s)	25, 926
TaaI	ACNGT	1 cut(s)	8
TaiI	ACGT	1 cut(s)	1713
TaqI	TCGA	9 cut(s)	158, 236, 308, 505, 523, 859, 1071, 1124, 1404
TasI	AATT	6 cut(s)	184, 363, 577, 582, 1196, 1542
TatI	WGTACW	1 cut(s)	3
TscAI	CASTG	6 cut(s)	396, 547, 712, 925, 969, 1282
TseFI	GTSAC	2 cut(s)	842, 1273
TseI	GCWGC	4 cut(s)	851, 971, 1533, 1721
Tsp45I	GTSAC	2 cut(s)	842, 1273
TspDTI	ATGAA	7 cut(s)	42, 110, 206, 746, 1218, 1575, 1727
TspRI	CASTG	6 cut(s)	396, 547, 712, 925, 969, 1282
Tth111I	GACNNNGTC	1 cut(s)	913
XapI	RAATTY	1 cut(s)	577
XceI	RCATGY	1 cut(s)	155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1336
XmaJI	CCTAGG	1 cut(s)	926
XmnI	GAANNNNTTC	3 cut(s)	402, 451, 1067
XspI	CTAG	4 cut(s)	351, 786, 927, 1217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.