Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009958

Physical Location & Seq

Genomic Coordinates Reverse (-)

3451706 .. 3452353

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTATGCGAATTTAGCAAAAGGCCAACCATTTCTCTTGGAAATTAGGGTTTGTTCGAGACCCAAATCGTTTCACACCTCAAAGTTTCAATCTTTACAAATTGGGTCTCATCCAAAACCCCCAATAAACCTTAGTCCGATCAAACTCACAAAACCCACATCCAGGTTTGGTGAAAAAAATTATGGGTTGTCACATTTGGTTCGGTTTTCGACCGGTTCGTATTGTGAGATTCTGGAAAAGGGAATTGTTGCAAAACCCAGAAGTGTTTCTGGGGGGTTTAGGATGAGAAGTGGTACACAGAATTGGTGTTTTGTAAGAGGACGAGGTTTTTCGAGTTGGTTTGGTCAGAAAGTAAATGGAGGGAGTGGTGTGGGAAGAGCTGGGCGAAGACTGCCGTGGTTGCCGGCAGCAAAAGCTAAGGGAGCACGAGGTTTGGAGAAAGGACCTACGGCGAAGACATCTGTTTCGTCTTGGGAGGAATCTGCAAAGAGGTTAGAGGAAGTTAGTGATAATGGTTCTTTTGGGGGGGTGGGGGGAGCATCAAAGAGTTTAGATGGAGATAGTAGTAAATCGTCTTGGGACAATTCAGCGAGTATGTTAGAGGAAGAAACAAAGTCGAAAACTGGTCGTGCTTCTTGGGAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070039 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase SpoU_sub_bind

Protein Analysis

216

Amino Acids

23.26

Weight (kDa)

10.16

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19870
fragaria_vesca	FvH4_1g06150 FvH4_1g06190
malus_domestica	MD02G1065700.v1.1 MD15G1196600.v1.1
prunus_persica	Prupe.7G219800_v2.0.a1 Prupe.7G219800_v2.0.a1
pyrus_communis	pycom02g05180 pycom02g05220 pycom15g17570
rosa_chinensis	RchiOBHm_Chr2g0091911
rosa_laevigata	RLG00000016260
rosa_multiflora	Rmu_sc0031557.1_g000002 Rmu_sc0031558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149620
rosa_rugosa	Rorug02G0021600
rosa_samantha	Rh2AG067200 Rh2BG066400 Rh2CG067700 Rh2DG066300
rosa_wichuraiana	Rw2G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	10
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	162
AgeI	ACCGGT	1 cut(s)	212
AgsI	TTSAA	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	2 cut(s)	380, 416
AluI	AGCT	2 cut(s)	380, 416
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	2 cut(s)	52, 111
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	10
ArsI	GACNNNNNNTTYG	2 cut(s)	448, 480
AsiGI	ACCGGT	1 cut(s)	212
Asp700I	GAANNNNTTC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	443
BauI	CACGAG	1 cut(s)	426
BbsI	GAAGAC	2 cut(s)	394, 461
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	2 cut(s)	379, 465
BciT130I	CCWGG	1 cut(s)	163
BcoDI	GTCTC	2 cut(s)	52, 111
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	548
BpiI	GAAGAC	2 cut(s)	394, 461
Bpu10I	CCTNAGC	1 cut(s)	417
BsaI	GGTCTC	2 cut(s)	52, 111
BsaJI	CCNNGG	1 cut(s)	395
BsaWI	WCCGGW	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse118I	RCCGGY	2 cut(s)	212, 403
Bse1I	ACTGG	1 cut(s)	628
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	3 cut(s)	109, 158, 288
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	628
BseXI	GCAGC	1 cut(s)	419
BseYI	CCCAGC	1 cut(s)	380
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	24
BshTI	ACCGGT	1 cut(s)	212
BsiEI	CGRYCG	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	2 cut(s)	213, 404
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	2 cut(s)	52, 111
BsmFI	GGGAC	1 cut(s)	593
BsnI	GGCC	1 cut(s)	24
Bso31I	GGTCTC	2 cut(s)	52, 111
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	24
BspQI	GCTCTTC	1 cut(s)	370
BspTNI	GGTCTC	2 cut(s)	52, 111
BsrFI	RCCGGY	2 cut(s)	212, 403
BsrI	ACTGG	1 cut(s)	628
BssAI	RCCGGY	2 cut(s)	212, 403
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	1 cut(s)	138
BssSI	CACGAG	1 cut(s)	426
Bst2BI	CACGAG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	131, 417
BstDSI	CCRYGG	1 cut(s)	395
BstF5I	GGATG	3 cut(s)	109, 158, 288
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	52, 111
BstMBI	GATC	1 cut(s)	138
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 391, 400, 413, 422
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	419
BstV2I	GAAGAC	2 cut(s)	394, 461
BsuRI	GGCC	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	395
BtsCI	GGATG	3 cut(s)	109, 158, 288
Cac8I	GCNNGC	1 cut(s)	405
Cfr10I	RCCGGY	2 cut(s)	212, 403
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	294
CspAI	ACCGGT	1 cut(s)	212
CviJI	RGCY	3 cut(s)	24, 380, 416
CviKI_1	RGCY	3 cut(s)	24, 380, 416
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	2 cut(s)	131, 417
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
Eco31I	GGTCTC	2 cut(s)	52, 111
Eco47I	GGWCC	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	161
FaiI	YATR	3 cut(s)	6, 183, 596
FaqI	GGGAC	1 cut(s)	593
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	3 cut(s)	96, 145, 295
Fsp4HI	GCNGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	408
GsaI	CCCAGC	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	2 cut(s)	213, 404
HinfI	GANTC	2 cut(s)	229, 479
HpaII	CCGG	2 cut(s)	213, 404
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	2 cut(s)	138, 348
Hpy188III	TCNNGA	2 cut(s)	57, 233
Hpy8I	GTNNAC	1 cut(s)	296
HpyCH4V	TGCA	2 cut(s)	251, 485
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 391, 400, 413, 422
HpyF3I	CTNAG	2 cut(s)	131, 417
KroI	GCCGGC	1 cut(s)	403
KroNI	GCCGGC	1 cut(s)	405
Kzo9I	GATC	1 cut(s)	138
LguI	GCTCTTC	1 cut(s)	370
LmnI	GCTCC	2 cut(s)	422, 536
LpnPI	CCDG	9 cut(s)	148, 175, 218, 226, 255, 271, 366, 417, 609
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	1 cut(s)	548
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	4 cut(s)	387, 399, 466, 617
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	7 cut(s)	10, 42, 99, 178, 243, 301, 583
MroNI	GCCGGC	1 cut(s)	403
MroXI	GAANNNNTTC	1 cut(s)	265
MspI	CCGG	2 cut(s)	213, 404
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	5 cut(s)	14, 391, 400, 413, 422
NaeI	GCCGGC	1 cut(s)	405
NdeII	GATC	1 cut(s)	138
NgoMIV	GCCGGC	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PdiI	GCCGGC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	229, 479
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	409
PpuMI	RGGWCCY	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	443
Psp6I	CCWGG	1 cut(s)	161
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	443
PspPPI	RGGWCCY	1 cut(s)	443
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	370
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	427
SfaNI	GCATC	1 cut(s)	548
SinI	GGWCC	1 cut(s)	443
Sse9I	AATT	7 cut(s)	10, 42, 99, 178, 243, 301, 583
StyD4I	CCNGG	1 cut(s)	161
TaqI	TCGA	4 cut(s)	56, 209, 332, 617
TasI	AATT	7 cut(s)	10, 42, 99, 178, 243, 301, 583
TfiI	GAWTC	2 cut(s)	229, 479
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	10
XmnI	GAANNNNTTC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.