Prupe.7G219800_v2.0.a1

rRNA methyltransferase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
19720532 .. 19723187
2656 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G219800.2

Sequence Viewer

Length: 1878 bp
ATGTCCACTAGTTTAACAAAGGGCCAAGCATTTCCCCTGGCTTTAAGGATTTGTTCAAGACCCAGATGCTCTAAACCATTCCACACCTCAAAGCCCCAATCTTTACAAATTGGTTCTCTTCCAAAACCCCCACTAAACCTTAGTTTGGGGAGGCTCACTAAACCTTCATGTGGGTCTGGTCAGAAAATGTATGGGATGTCCCGTTTGGTTCATTTTTCAACCGATTCCTGTTTTAAGATGCTAGAAAGTGACGTTCTTGCAAAACCCAGAAGCGTCTCTAGCGGATTCAGGCTTAGAAATGCCACACAGAATTGGCTTTTGATAAGAGGTAGAGCTTTTTCGAGTTGGTCTGGTCAGAAAGTTAATGGAGGGAGTAGTGTGGCAAGAGCTGGTAAAAGACTCCCGTGGTTGCCGGCAAACAAAGCCAAGGGAGCAAAAGGATTGGAGAAAGCAACTACTGCTAAGACATCTATTTCTTCTTGGGAGGAATCTGCTAAGAGGTTAGAGGAAGTTAATGATAATGCTTCTTGGGGAGAATCAGCAAGGAGCTTGGATGGAGACGGTAGTAAGTCCTCTTGGGACAAATCAGCAAAGAGGTTAGAGGAAGAACCAAAGTCGAAAACTGGTCGTTCTTCTTGGGAGGTGTCAGCAGAAACTTATGTTAGGAGAAGTGGCCCATCAGAACGGGGGAGAAAAGAAAGTAGAACTGGAATGGTAAGTATGGCACATGACCGGCAAAGTGATTACCGTGGGAGGGAGAAAAGATTGGAGGAAGCCGAGACAGAAGGAGATGAAAAAGAAGAAGAAATGGAGGCTGTTGATGATCCAAGGTGGGATCGTATTCAAAACAAGTTCAGGGGAATGGAAGATGTTAAATCTGGACGTGAGAGACCTGAGTTTCGAAGGTGGAATAGGCAGGAAGATTGGGGTAAGAAGACATGGAAAGAGGCTACAGAATCGTCTGTGCCTAGGATGATTGGCCAAGGTGTTTATGGCGTTGGTCCAGTTTTGGCTGCTTTGTCGGCTGGAAGAAGAGAATTTTATGCATTGTATATTCAAGAAGGGTTGGATTTGAGCAAAAATAATAGGAAGAAGAAGGACAAGAAGGGATTTGAGAGAATTTTAATAATGGCTGATAAGCTTGGATTAAGCGTAAAGGATGTGTCCAAGCATGATCTTAATATGGCTACTGATAATCGACCTCATCAGGGTCTGGTGCTAGATGCATCTCCATTGGAGATGGTAAAAATTAAGGAATTGGACCCTGTTTCAGTTGAGGAAGATAAGTGTTCTCTTTGGGTTGCTTTGGATGAGGTTACAGATCCTCAGAATTTGGGGGCAATCATCAGGTCTTCTTACTTCTTTGGAGCTTCAGGGGTGGTGTTATGTGCCAAGAATTCAGCCCCGCTTAGTGGTGTTGTGAGCAAAGCAAGTGCAGGCTCACTTGAGCTAATGGAGTTGAGATACTGCAAGAATATGATGCAGTTCCTAACATCCTCGGCTGAAAATGGTTGGCGAGTTCTTGGAGGTTCTGTTTCTTCCAGAGCTATACCATTGAACGAGGTTGTGCCTAGTGTGCCAACAGTTCTTGTTCTGGGCAGCGAGGGCACCGGCTTGAGGCCTTTGGTGGAAAAATCTTGCACTGATTTGATTAGAATCCCTGGAAATATTCCTGTGGATGTAAGTGCTGGTGGAGCTGATGATATTGAAACTGGGGAAGTGAGTCATGGGTGCTCAGCTGAAGAGTTCCGATCATTTTTGGCTGTGGAGAGCTTAAATGTCAGCGTTGCAGCTGGTGTGCTTCTTCATCACTTAACGGGAAACAATAACGAGAAAGATGGTCATGTGGTTAATCAGCAGACTGGCGAACTTGAGTGA

Protein Analysis

626

Amino Acids

68.64

Weight (kDa)

8.97

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1607
AciI CCGC 2 cut(s) 282, 1406
AclWI GGATC 3 cut(s) 818, 843, 1316
AcoI YGGCCR 1 cut(s) 979
AcsI RAATTY 4 cut(s) 1037, 1119, 1330, 1396
AcuI CTGAAG 2 cut(s) 1356, 1761
AfiI CCNNNNNNNGG 6 cut(s) 145, 170, 754, 1208, 1412, 1617
AgsI TTSAA 6 cut(s) 57, 219, 845, 1058, 1558, 1709
AhlI ACTAGT 1 cut(s) 8
AjiI CACGTC 1 cut(s) 884
AjnI CCWGG 2 cut(s) 36, 1660
Alw21I GWGCWC 1 cut(s) 1736
Alw26I GTCTC 4 cut(s) 280, 552, 773, 883
AlwI GGATC 3 cut(s) 818, 843, 1316
AlwNI CAGNNNCTG 1 cut(s) 1213
AoxI GGCC 4 cut(s) 22, 673, 979, 1619
ApeKI GCWGC 3 cut(s) 1013, 1599, 1790
ApoI RAATTY 4 cut(s) 1037, 1119, 1330, 1396
ArsI GACNNNNNNTTYG 2 cut(s) 882, 914
AspA2I CCTAGG 1 cut(s) 968
AspS9I GGNCC 4 cut(s) 22, 674, 1001, 1261
AsuII TTCGAA 1 cut(s) 901
AvaII GGWCC 2 cut(s) 1001, 1261
AvrII CCTAGG 1 cut(s) 968
BaeGI GKGCMC 1 cut(s) 1610
BalI TGGCCA 1 cut(s) 981
BanI GGYRCC 1 cut(s) 1607
BbsI GAAGAC 2 cut(s) 941, 1344
Bbv12I GWGCWC 1 cut(s) 1736
BbvI GCAGC 3 cut(s) 1000, 1611, 1802
BccI CCATC 4 cut(s) 548, 685, 1234, 1832
BciT130I CCWGG 2 cut(s) 38, 1662
BcoDI GTCTC 4 cut(s) 280, 552, 773, 883
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 6 cut(s) 9, 242, 279, 969, 1220, 1572
BfmI CTRYAG 1 cut(s) 951
BisI GCNGC 3 cut(s) 1014, 1600, 1791
BlnI CCTAGG 1 cut(s) 968
BlpI GCTNAGC 1 cut(s) 1735
BlsI GCNGC 3 cut(s) 1015, 1601, 1792
Bme1390I CCNGG 2 cut(s) 38, 1662
Bme18I GGWCC 2 cut(s) 1001, 1261
BmgBI CACGTC 1 cut(s) 884
BmgT120I GGNCC 4 cut(s) 22, 674, 1001, 1261
BmiI GGNNCC 2 cut(s) 1263, 1609
BmrFI CCNGG 2 cut(s) 38, 1662
BmrI ACTGGG 1 cut(s) 1722
BmsI GCATC 5 cut(s) 56, 228, 1213, 1235, 1470
BmuI ACTGGG 1 cut(s) 1722
BpiI GAAGAC 2 cut(s) 941, 1344
Bpu1102I GCTNAGC 1 cut(s) 1735
Bpu14I TTCGAA 1 cut(s) 901
BpuEI CTTGAG 2 cut(s) 1466, 1636
BsaBI GATNNNNATC 1 cut(s) 1655
BsaI GGTCTC 1 cut(s) 883
BsaJI CCNNGG 9 cut(s) 36, 404, 426, 748, 827, 968, 982, 1497, 1660
BsaXI ACNNNNNCTCC 2 cut(s) 1518, 1548
Bsc4I CCNNNNNNNGG 6 cut(s) 145, 170, 754, 1208, 1412, 1617
Bse118I RCCGGY 3 cut(s) 412, 732, 1610
Bse1I ACTGG 5 cut(s) 628, 712, 1004, 1717, 1867
Bse8I GATNNNNATC 1 cut(s) 1655
BseBI CCWGG 2 cut(s) 38, 1662
BseDI CCNNGG 9 cut(s) 36, 404, 426, 748, 827, 968, 982, 1497, 1660
BseGI GGATG 7 cut(s) 201, 559, 978, 1165, 1315, 1493, 1684
BseJI GATNNNNATC 1 cut(s) 1655
BseLI CCNNNNNNNGG 6 cut(s) 145, 170, 754, 1208, 1412, 1617
BseMII CTCAG 3 cut(s) 885, 1340, 1749
BseNI ACTGG 5 cut(s) 628, 712, 1004, 1717, 1867
BseSI GKGCMC 1 cut(s) 1610
BseXI GCAGC 3 cut(s) 1000, 1611, 1802
BsgI GTGCAG 1 cut(s) 1455
BshFI GGCC 4 cut(s) 24, 675, 981, 1621
BshNI GGYRCC 1 cut(s) 1607
BsiHKAI GWGCWC 1 cut(s) 1736
BsiSI CCGG 3 cut(s) 413, 733, 1611
BslFI GGGAC 2 cut(s) 184, 593
BslI CCNNNNNNNGG 6 cut(s) 145, 170, 754, 1208, 1412, 1617
BsmAI GTCTC 4 cut(s) 280, 552, 773, 883
BsmBI CGTCTC 2 cut(s) 280, 552
BsmFI GGGAC 2 cut(s) 184, 593
BsnI GGCC 4 cut(s) 24, 675, 981, 1621
Bso31I GGTCTC 1 cut(s) 883
Bsp119I TTCGAA 1 cut(s) 901
Bsp1286I GDGCHC 2 cut(s) 1610, 1736
Bsp143I GATC 5 cut(s) 823, 835, 1174, 1321, 1751
Bsp1720I GCTNAGC 1 cut(s) 1735
BspACI CCGC 2 cut(s) 282, 1406
BspANI GGCC 4 cut(s) 24, 675, 981, 1621
BspCNI CTCAG 3 cut(s) 886, 1339, 1748
BspLI GGNNCC 2 cut(s) 1263, 1609
BspPI GGATC 3 cut(s) 818, 843, 1316
BspT104I TTCGAA 1 cut(s) 901
BspT107I GGYRCC 1 cut(s) 1607
BspTNI GGTCTC 1 cut(s) 883
BsrFI RCCGGY 3 cut(s) 412, 732, 1610
BsrI ACTGG 5 cut(s) 628, 712, 1004, 1717, 1867
BssAI RCCGGY 3 cut(s) 412, 732, 1610
BssECI CCNNGG 9 cut(s) 36, 404, 426, 748, 827, 968, 982, 1497, 1660
BssMI GATC 5 cut(s) 823, 835, 1174, 1321, 1751
BssT1I CCWWGG 4 cut(s) 426, 827, 968, 982
Bst2UI CCWGG 2 cut(s) 38, 1662
Bst4CI ACNGT 3 cut(s) 563, 749, 1585
Bst6I CTCTTC 3 cut(s) 123, 1027, 1737
BstAPI GCANNNNNTGC 1 cut(s) 458
BstBI TTCGAA 1 cut(s) 901
BstC8I GCNNGC 2 cut(s) 414, 1438
BstDEI CTNAG 8 cut(s) 140, 293, 462, 495, 894, 1326, 1409, 1735
BstDSI CCRYGG 2 cut(s) 404, 748
BstF5I GGATG 7 cut(s) 201, 559, 978, 1165, 1315, 1493, 1684
BstKTI GATC 5 cut(s) 826, 838, 1177, 1324, 1754
BstMAI GTCTC 4 cut(s) 280, 552, 773, 883
BstMBI GATC 5 cut(s) 823, 835, 1174, 1321, 1751
BstMWI GCNNNNNNNGC 8 cut(s) 279, 422, 431, 458, 1022, 1576, 1605, 1694
BstNI CCWGG 2 cut(s) 38, 1662
BstSCI CCNGG 2 cut(s) 36, 1660
BstSFI CTRYAG 1 cut(s) 951
BstSLI GKGCMC 1 cut(s) 1610
BstV1I GCAGC 3 cut(s) 1000, 1611, 1802
BstV2I GAAGAC 2 cut(s) 941, 1344
BstX2I RGATCY 1 cut(s) 1321
BstYI RGATCY 1 cut(s) 1321
BsuRI GGCC 4 cut(s) 24, 675, 981, 1621
BtgI CCRYGG 2 cut(s) 404, 748
BtrI CACGTC 1 cut(s) 884
BtsCI GGATG 7 cut(s) 201, 559, 978, 1165, 1315, 1493, 1684
BtsIMutI CAGTG 1 cut(s) 1641
Cac8I GCNNGC 2 cut(s) 414, 1438
CaiI CAGNNNCTG 1 cut(s) 1213
Cfr10I RCCGGY 3 cut(s) 412, 732, 1610
Cfr13I GGNCC 4 cut(s) 22, 674, 1001, 1261
CseI GACGC 1 cut(s) 262
CviAII CATG 6 cut(s) 168, 728, 939, 1172, 1727, 1844
DdeI CTNAG 8 cut(s) 140, 293, 462, 495, 894, 1326, 1409, 1735
DpnI GATC 5 cut(s) 825, 837, 1176, 1323, 1753
DpnII GATC 5 cut(s) 823, 835, 1174, 1321, 1751
EaeI YGGCCR 1 cut(s) 979
Eam1104I CTCTTC 3 cut(s) 123, 1027, 1737
EarI CTCTTC 3 cut(s) 123, 1027, 1737
Eco130I CCWWGG 4 cut(s) 426, 827, 968, 982
Eco147I AGGCCT 1 cut(s) 1621
Eco31I GGTCTC 1 cut(s) 883
Eco47I GGWCC 2 cut(s) 1001, 1261
Eco57I CTGAAG 2 cut(s) 1356, 1761
EcoRI GAATTC 1 cut(s) 1396
EcoRII CCWGG 2 cut(s) 36, 1660
EcoT14I CCWWGG 4 cut(s) 426, 827, 968, 982
EcoT22I ATGCAT 2 cut(s) 1048, 1228
ErhI CCWWGG 4 cut(s) 426, 827, 968, 982
Esp3I CGTCTC 2 cut(s) 280, 552
FaeI CATG 6 cut(s) 171, 731, 942, 1175, 1730, 1847
FaqI GGGAC 2 cut(s) 184, 593
FatI CATG 6 cut(s) 167, 727, 938, 1171, 1726, 1843
FauI CCCGC 1 cut(s) 1413
Fnu4HI GCNGC 3 cut(s) 1014, 1600, 1791
FokI GGATG 7 cut(s) 208, 566, 985, 1172, 1322, 1480, 1691
Fsp4HI GCNGC 3 cut(s) 1014, 1600, 1791
FspBI CTAG 6 cut(s) 9, 242, 279, 969, 1220, 1572
GluI GCNGC 3 cut(s) 1014, 1600, 1791
HaeIII GGCC 4 cut(s) 24, 675, 981, 1621
HapII CCGG 3 cut(s) 413, 733, 1611
HgaI GACGC 1 cut(s) 262
Hin1II CATG 6 cut(s) 171, 731, 942, 1175, 1730, 1847
HindIII AAGCTT 1 cut(s) 1139
HinfI GANTC 8 cut(s) 224, 285, 399, 488, 536, 956, 1656, 1723
HpaII CCGG 3 cut(s) 413, 733, 1611
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 5 cut(s) 183, 357, 682, 1329, 1751
Hpy188III TCNNGA 4 cut(s) 57, 879, 1058, 1542
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 6 cut(s) 174, 779, 897, 1055, 1090, 1099
HpyCH4III ACNGT 3 cut(s) 563, 749, 1585
HpyCH4IV ACGT 2 cut(s) 252, 883
HpyCH4V TGCA 8 cut(s) 260, 1046, 1226, 1436, 1470, 1483, 1641, 1790
HpyF10VI GCNNNNNNNGC 8 cut(s) 279, 422, 431, 458, 1022, 1576, 1605, 1694
HpyF3I CTNAG 8 cut(s) 140, 293, 462, 495, 894, 1326, 1409, 1735
HpySE526I ACGT 2 cut(s) 252, 883
Hsp92II CATG 6 cut(s) 171, 731, 942, 1175, 1730, 1847
KroI GCCGGC 1 cut(s) 412
KroNI GCCGGC 1 cut(s) 414
Kzo9I GATC 5 cut(s) 823, 835, 1174, 1321, 1751
LmnI GCTCC 4 cut(s) 431, 546, 1367, 1694
Lsp1109I GCAGC 3 cut(s) 1000, 1611, 1802
LweI GCATC 5 cut(s) 56, 228, 1213, 1235, 1470
MaeI CTAG 6 cut(s) 9, 242, 279, 969, 1220, 1572
MaeII ACGT 2 cut(s) 252, 883
MaeIII GTNAC 2 cut(s) 248, 1315
MalI GATC 5 cut(s) 825, 837, 1176, 1323, 1753
MboI GATC 5 cut(s) 823, 835, 1174, 1321, 1751
MflI RGATCY 1 cut(s) 1321
MhlI GDGCHC 2 cut(s) 1610, 1736
MlsI TGGCCA 1 cut(s) 981
MluCI AATT 8 cut(s) 108, 310, 1037, 1119, 1248, 1256, 1330, 1396
MluNI TGGCCA 1 cut(s) 981
MlyI GAGTC 2 cut(s) 393, 1732
MmeI TCCRAC 1 cut(s) 1047
Mox20I TGGCCA 1 cut(s) 981
Mph1103I ATGCAT 2 cut(s) 1048, 1228
MroNI GCCGGC 1 cut(s) 412
MscI TGGCCA 1 cut(s) 981
Msp20I TGGCCA 1 cut(s) 981
MspA1I CMGCKG 2 cut(s) 1739, 1793
MspI CCGG 3 cut(s) 413, 733, 1611
MspR9I CCNGG 2 cut(s) 38, 1662
MvaI CCWGG 2 cut(s) 38, 1662
MwoI GCNNNNNNNGC 8 cut(s) 279, 422, 431, 458, 1022, 1576, 1605, 1694
NaeI GCCGGC 1 cut(s) 414
NdeII GATC 5 cut(s) 823, 835, 1174, 1321, 1751
NgoMIV GCCGGC 1 cut(s) 412
NlaIII CATG 6 cut(s) 171, 731, 942, 1175, 1730, 1847
NlaIV GGNNCC 2 cut(s) 1263, 1609
NmeAIII GCCGAG 2 cut(s) 802, 1478
NmuCI GTSAC 1 cut(s) 248
NsiI ATGCAT 2 cut(s) 1048, 1228
NspV TTCGAA 1 cut(s) 901
PceI AGGCCT 1 cut(s) 1621
PdiI GCCGGC 1 cut(s) 414
PfeI GAWTC 6 cut(s) 224, 285, 488, 536, 956, 1656
PkrI GCNGC 3 cut(s) 1015, 1601, 1792
PleI GAGTC 2 cut(s) 393, 1731
PpsI GAGTC 2 cut(s) 393, 1731
Psp6I CCWGG 2 cut(s) 36, 1660
PspGI CCWGG 2 cut(s) 36, 1660
PspN4I GGNNCC 2 cut(s) 1263, 1609
PspPI GGNCC 4 cut(s) 22, 674, 1001, 1261
PstNI CAGNNNCTG 1 cut(s) 1213
PsuI RGATCY 1 cut(s) 1321
PvuII CAGCTG 2 cut(s) 1739, 1793
SatI GCNGC 3 cut(s) 1014, 1600, 1791
Sau3AI GATC 5 cut(s) 823, 835, 1174, 1321, 1751
Sau96I GGNCC 4 cut(s) 22, 674, 1001, 1261
SchI GAGTC 2 cut(s) 393, 1732
ScrFI CCNGG 2 cut(s) 38, 1662
SduI GDGCHC 2 cut(s) 1610, 1736
SfaNI GCATC 5 cut(s) 56, 228, 1213, 1235, 1470
SfcI CTRYAG 1 cut(s) 951
SfuI TTCGAA 1 cut(s) 901
SinI GGWCC 2 cut(s) 1001, 1261
SmlI CTYRAG 3 cut(s) 1445, 1615, 1871
SmoI CTYRAG 3 cut(s) 1445, 1615, 1871
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 8 cut(s) 108, 310, 1037, 1119, 1248, 1256, 1330, 1396
SseBI AGGCCT 1 cut(s) 1621
SsiI CCGC 2 cut(s) 282, 1406
SspI AATATT 1 cut(s) 1669
SspMI CTAG 6 cut(s) 9, 242, 279, 969, 1220, 1572
StuI AGGCCT 1 cut(s) 1621
StyD4I CCNGG 2 cut(s) 36, 1660
StyI CCWWGG 4 cut(s) 426, 827, 968, 982
TaaI ACNGT 3 cut(s) 563, 749, 1585
TaiI ACGT 2 cut(s) 255, 886
TaqI TCGA 4 cut(s) 341, 617, 901, 1198
TasI AATT 8 cut(s) 108, 310, 1037, 1119, 1248, 1256, 1330, 1396
TfiI GAWTC 6 cut(s) 224, 285, 488, 536, 956, 1656
TscAI CASTG 1 cut(s) 1648
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 3 cut(s) 1013, 1599, 1790
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 4 cut(s) 156, 200, 807, 1796
TspRI CASTG 1 cut(s) 1648
VpaK11BI GGWCC 2 cut(s) 1001, 1261
XapI RAATTY 4 cut(s) 1037, 1119, 1330, 1396
XcmI CCANNNNNNNNNTGG 1 cut(s) 989
XmaJI CCTAGG 1 cut(s) 968
XspI CTAG 6 cut(s) 9, 242, 279, 969, 1220, 1572
Zsp2I ATGCAT 2 cut(s) 1048, 1228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.