rRNA methyltransferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G19870 |
| fragaria_vesca | FvH4_1g06150 FvH4_1g06190 |
| malus_domestica | MD02G1065700.v1.1 MD15G1196600.v1.1 |
| prunus_persica | Prupe.7G219800_v2.0.a1 Prupe.7G219800_v2.0.a1 |
| pyrus_communis | pycom02g05180 pycom02g05220 pycom15g17570 |
| rosa_chinensis | RchiOBHm_Chr2g0091911 |
| rosa_laevigata | RLG00000016260 |
| rosa_multiflora | Rmu_sc0031557.1_g000002 Rmu_sc0031558.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00149620 |
| rosa_rugosa | Rorug02G0021600 |
| rosa_samantha | Rh2AG067200 Rh2BG066400 Rh2CG067700 Rh2DG066300 |
| rosa_wichuraiana | Rw2G005380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1607 |
| AciI | CCGC | 2 cut(s) | 282, 1406 |
| AclWI | GGATC | 3 cut(s) | 818, 843, 1316 |
| AcoI | YGGCCR | 1 cut(s) | 979 |
| AcsI | RAATTY | 4 cut(s) | 1037, 1119, 1330, 1396 |
| AcuI | CTGAAG | 2 cut(s) | 1356, 1761 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 145, 170, 754, 1208, 1412, 1617 |
| AgsI | TTSAA | 6 cut(s) | 57, 219, 845, 1058, 1558, 1709 |
| AhlI | ACTAGT | 1 cut(s) | 8 |
| AjiI | CACGTC | 1 cut(s) | 884 |
| AjnI | CCWGG | 2 cut(s) | 36, 1660 |
| Alw21I | GWGCWC | 1 cut(s) | 1736 |
| Alw26I | GTCTC | 4 cut(s) | 280, 552, 773, 883 |
| AlwI | GGATC | 3 cut(s) | 818, 843, 1316 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1213 |
| AoxI | GGCC | 4 cut(s) | 22, 673, 979, 1619 |
| ApeKI | GCWGC | 3 cut(s) | 1013, 1599, 1790 |
| ApoI | RAATTY | 4 cut(s) | 1037, 1119, 1330, 1396 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 882, 914 |
| AspA2I | CCTAGG | 1 cut(s) | 968 |
| AspS9I | GGNCC | 4 cut(s) | 22, 674, 1001, 1261 |
| AsuII | TTCGAA | 1 cut(s) | 901 |
| AvaII | GGWCC | 2 cut(s) | 1001, 1261 |
| AvrII | CCTAGG | 1 cut(s) | 968 |
| BaeGI | GKGCMC | 1 cut(s) | 1610 |
| BalI | TGGCCA | 1 cut(s) | 981 |
| BanI | GGYRCC | 1 cut(s) | 1607 |
| BbsI | GAAGAC | 2 cut(s) | 941, 1344 |
| Bbv12I | GWGCWC | 1 cut(s) | 1736 |
| BbvI | GCAGC | 3 cut(s) | 1000, 1611, 1802 |
| BccI | CCATC | 4 cut(s) | 548, 685, 1234, 1832 |
| BciT130I | CCWGG | 2 cut(s) | 38, 1662 |
| BcoDI | GTCTC | 4 cut(s) | 280, 552, 773, 883 |
| BcuI | ACTAGT | 1 cut(s) | 8 |
| BfaI | CTAG | 6 cut(s) | 9, 242, 279, 969, 1220, 1572 |
| BfmI | CTRYAG | 1 cut(s) | 951 |
| BisI | GCNGC | 3 cut(s) | 1014, 1600, 1791 |
| BlnI | CCTAGG | 1 cut(s) | 968 |
| BlpI | GCTNAGC | 1 cut(s) | 1735 |
| BlsI | GCNGC | 3 cut(s) | 1015, 1601, 1792 |
| Bme1390I | CCNGG | 2 cut(s) | 38, 1662 |
| Bme18I | GGWCC | 2 cut(s) | 1001, 1261 |
| BmgBI | CACGTC | 1 cut(s) | 884 |
| BmgT120I | GGNCC | 4 cut(s) | 22, 674, 1001, 1261 |
| BmiI | GGNNCC | 2 cut(s) | 1263, 1609 |
| BmrFI | CCNGG | 2 cut(s) | 38, 1662 |
| BmrI | ACTGGG | 1 cut(s) | 1722 |
| BmsI | GCATC | 5 cut(s) | 56, 228, 1213, 1235, 1470 |
| BmuI | ACTGGG | 1 cut(s) | 1722 |
| BpiI | GAAGAC | 2 cut(s) | 941, 1344 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1735 |
| Bpu14I | TTCGAA | 1 cut(s) | 901 |
| BpuEI | CTTGAG | 2 cut(s) | 1466, 1636 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1655 |
| BsaI | GGTCTC | 1 cut(s) | 883 |
| BsaJI | CCNNGG | 9 cut(s) | 36, 404, 426, 748, 827, 968, 982, 1497, 1660 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1518, 1548 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 145, 170, 754, 1208, 1412, 1617 |
| Bse118I | RCCGGY | 3 cut(s) | 412, 732, 1610 |
| Bse1I | ACTGG | 5 cut(s) | 628, 712, 1004, 1717, 1867 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1655 |
| BseBI | CCWGG | 2 cut(s) | 38, 1662 |
| BseDI | CCNNGG | 9 cut(s) | 36, 404, 426, 748, 827, 968, 982, 1497, 1660 |
| BseGI | GGATG | 7 cut(s) | 201, 559, 978, 1165, 1315, 1493, 1684 |
| BseJI | GATNNNNATC | 1 cut(s) | 1655 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 145, 170, 754, 1208, 1412, 1617 |
| BseMII | CTCAG | 3 cut(s) | 885, 1340, 1749 |
| BseNI | ACTGG | 5 cut(s) | 628, 712, 1004, 1717, 1867 |
| BseSI | GKGCMC | 1 cut(s) | 1610 |
| BseXI | GCAGC | 3 cut(s) | 1000, 1611, 1802 |
| BsgI | GTGCAG | 1 cut(s) | 1455 |
| BshFI | GGCC | 4 cut(s) | 24, 675, 981, 1621 |
| BshNI | GGYRCC | 1 cut(s) | 1607 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1736 |
| BsiSI | CCGG | 3 cut(s) | 413, 733, 1611 |
| BslFI | GGGAC | 2 cut(s) | 184, 593 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 145, 170, 754, 1208, 1412, 1617 |
| BsmAI | GTCTC | 4 cut(s) | 280, 552, 773, 883 |
| BsmBI | CGTCTC | 2 cut(s) | 280, 552 |
| BsmFI | GGGAC | 2 cut(s) | 184, 593 |
| BsnI | GGCC | 4 cut(s) | 24, 675, 981, 1621 |
| Bso31I | GGTCTC | 1 cut(s) | 883 |
| Bsp119I | TTCGAA | 1 cut(s) | 901 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1610, 1736 |
| Bsp143I | GATC | 5 cut(s) | 823, 835, 1174, 1321, 1751 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1735 |
| BspACI | CCGC | 2 cut(s) | 282, 1406 |
| BspANI | GGCC | 4 cut(s) | 24, 675, 981, 1621 |
| BspCNI | CTCAG | 3 cut(s) | 886, 1339, 1748 |
| BspLI | GGNNCC | 2 cut(s) | 1263, 1609 |
| BspPI | GGATC | 3 cut(s) | 818, 843, 1316 |
| BspT104I | TTCGAA | 1 cut(s) | 901 |
| BspT107I | GGYRCC | 1 cut(s) | 1607 |
| BspTNI | GGTCTC | 1 cut(s) | 883 |
| BsrFI | RCCGGY | 3 cut(s) | 412, 732, 1610 |
| BsrI | ACTGG | 5 cut(s) | 628, 712, 1004, 1717, 1867 |
| BssAI | RCCGGY | 3 cut(s) | 412, 732, 1610 |
| BssECI | CCNNGG | 9 cut(s) | 36, 404, 426, 748, 827, 968, 982, 1497, 1660 |
| BssMI | GATC | 5 cut(s) | 823, 835, 1174, 1321, 1751 |
| BssT1I | CCWWGG | 4 cut(s) | 426, 827, 968, 982 |
| Bst2UI | CCWGG | 2 cut(s) | 38, 1662 |
| Bst4CI | ACNGT | 3 cut(s) | 563, 749, 1585 |
| Bst6I | CTCTTC | 3 cut(s) | 123, 1027, 1737 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 458 |
| BstBI | TTCGAA | 1 cut(s) | 901 |
| BstC8I | GCNNGC | 2 cut(s) | 414, 1438 |
| BstDEI | CTNAG | 8 cut(s) | 140, 293, 462, 495, 894, 1326, 1409, 1735 |
| BstDSI | CCRYGG | 2 cut(s) | 404, 748 |
| BstF5I | GGATG | 7 cut(s) | 201, 559, 978, 1165, 1315, 1493, 1684 |
| BstKTI | GATC | 5 cut(s) | 826, 838, 1177, 1324, 1754 |
| BstMAI | GTCTC | 4 cut(s) | 280, 552, 773, 883 |
| BstMBI | GATC | 5 cut(s) | 823, 835, 1174, 1321, 1751 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 279, 422, 431, 458, 1022, 1576, 1605, 1694 |
| BstNI | CCWGG | 2 cut(s) | 38, 1662 |
| BstSCI | CCNGG | 2 cut(s) | 36, 1660 |
| BstSFI | CTRYAG | 1 cut(s) | 951 |
| BstSLI | GKGCMC | 1 cut(s) | 1610 |
| BstV1I | GCAGC | 3 cut(s) | 1000, 1611, 1802 |
| BstV2I | GAAGAC | 2 cut(s) | 941, 1344 |
| BstX2I | RGATCY | 1 cut(s) | 1321 |
| BstYI | RGATCY | 1 cut(s) | 1321 |
| BsuRI | GGCC | 4 cut(s) | 24, 675, 981, 1621 |
| BtgI | CCRYGG | 2 cut(s) | 404, 748 |
| BtrI | CACGTC | 1 cut(s) | 884 |
| BtsCI | GGATG | 7 cut(s) | 201, 559, 978, 1165, 1315, 1493, 1684 |
| BtsIMutI | CAGTG | 1 cut(s) | 1641 |
| Cac8I | GCNNGC | 2 cut(s) | 414, 1438 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1213 |
| Cfr10I | RCCGGY | 3 cut(s) | 412, 732, 1610 |
| Cfr13I | GGNCC | 4 cut(s) | 22, 674, 1001, 1261 |
| CseI | GACGC | 1 cut(s) | 262 |
| CviAII | CATG | 6 cut(s) | 168, 728, 939, 1172, 1727, 1844 |
| DdeI | CTNAG | 8 cut(s) | 140, 293, 462, 495, 894, 1326, 1409, 1735 |
| DpnI | GATC | 5 cut(s) | 825, 837, 1176, 1323, 1753 |
| DpnII | GATC | 5 cut(s) | 823, 835, 1174, 1321, 1751 |
| EaeI | YGGCCR | 1 cut(s) | 979 |
| Eam1104I | CTCTTC | 3 cut(s) | 123, 1027, 1737 |
| EarI | CTCTTC | 3 cut(s) | 123, 1027, 1737 |
| Eco130I | CCWWGG | 4 cut(s) | 426, 827, 968, 982 |
| Eco147I | AGGCCT | 1 cut(s) | 1621 |
| Eco31I | GGTCTC | 1 cut(s) | 883 |
| Eco47I | GGWCC | 2 cut(s) | 1001, 1261 |
| Eco57I | CTGAAG | 2 cut(s) | 1356, 1761 |
| EcoRI | GAATTC | 1 cut(s) | 1396 |
| EcoRII | CCWGG | 2 cut(s) | 36, 1660 |
| EcoT14I | CCWWGG | 4 cut(s) | 426, 827, 968, 982 |
| EcoT22I | ATGCAT | 2 cut(s) | 1048, 1228 |
| ErhI | CCWWGG | 4 cut(s) | 426, 827, 968, 982 |
| Esp3I | CGTCTC | 2 cut(s) | 280, 552 |
| FaeI | CATG | 6 cut(s) | 171, 731, 942, 1175, 1730, 1847 |
| FaqI | GGGAC | 2 cut(s) | 184, 593 |
| FatI | CATG | 6 cut(s) | 167, 727, 938, 1171, 1726, 1843 |
| FauI | CCCGC | 1 cut(s) | 1413 |
| Fnu4HI | GCNGC | 3 cut(s) | 1014, 1600, 1791 |
| FokI | GGATG | 7 cut(s) | 208, 566, 985, 1172, 1322, 1480, 1691 |
| Fsp4HI | GCNGC | 3 cut(s) | 1014, 1600, 1791 |
| FspBI | CTAG | 6 cut(s) | 9, 242, 279, 969, 1220, 1572 |
| GluI | GCNGC | 3 cut(s) | 1014, 1600, 1791 |
| HaeIII | GGCC | 4 cut(s) | 24, 675, 981, 1621 |
| HapII | CCGG | 3 cut(s) | 413, 733, 1611 |
| HgaI | GACGC | 1 cut(s) | 262 |
| Hin1II | CATG | 6 cut(s) | 171, 731, 942, 1175, 1730, 1847 |
| HindIII | AAGCTT | 1 cut(s) | 1139 |
| HinfI | GANTC | 8 cut(s) | 224, 285, 399, 488, 536, 956, 1656, 1723 |
| HpaII | CCGG | 3 cut(s) | 413, 733, 1611 |
| Hpy166II | GTNNAC | 1 cut(s) | 6 |
| Hpy188I | TCNGA | 5 cut(s) | 183, 357, 682, 1329, 1751 |
| Hpy188III | TCNNGA | 4 cut(s) | 57, 879, 1058, 1542 |
| Hpy8I | GTNNAC | 1 cut(s) | 6 |
| HpyAV | CCTTC | 6 cut(s) | 174, 779, 897, 1055, 1090, 1099 |
| HpyCH4III | ACNGT | 3 cut(s) | 563, 749, 1585 |
| HpyCH4IV | ACGT | 2 cut(s) | 252, 883 |
| HpyCH4V | TGCA | 8 cut(s) | 260, 1046, 1226, 1436, 1470, 1483, 1641, 1790 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 279, 422, 431, 458, 1022, 1576, 1605, 1694 |
| HpyF3I | CTNAG | 8 cut(s) | 140, 293, 462, 495, 894, 1326, 1409, 1735 |
| HpySE526I | ACGT | 2 cut(s) | 252, 883 |
| Hsp92II | CATG | 6 cut(s) | 171, 731, 942, 1175, 1730, 1847 |
| KroI | GCCGGC | 1 cut(s) | 412 |
| KroNI | GCCGGC | 1 cut(s) | 414 |
| Kzo9I | GATC | 5 cut(s) | 823, 835, 1174, 1321, 1751 |
| LmnI | GCTCC | 4 cut(s) | 431, 546, 1367, 1694 |
| Lsp1109I | GCAGC | 3 cut(s) | 1000, 1611, 1802 |
| LweI | GCATC | 5 cut(s) | 56, 228, 1213, 1235, 1470 |
| MaeI | CTAG | 6 cut(s) | 9, 242, 279, 969, 1220, 1572 |
| MaeII | ACGT | 2 cut(s) | 252, 883 |
| MaeIII | GTNAC | 2 cut(s) | 248, 1315 |
| MalI | GATC | 5 cut(s) | 825, 837, 1176, 1323, 1753 |
| MboI | GATC | 5 cut(s) | 823, 835, 1174, 1321, 1751 |
| MflI | RGATCY | 1 cut(s) | 1321 |
| MhlI | GDGCHC | 2 cut(s) | 1610, 1736 |
| MlsI | TGGCCA | 1 cut(s) | 981 |
| MluCI | AATT | 8 cut(s) | 108, 310, 1037, 1119, 1248, 1256, 1330, 1396 |
| MluNI | TGGCCA | 1 cut(s) | 981 |
| MlyI | GAGTC | 2 cut(s) | 393, 1732 |
| MmeI | TCCRAC | 1 cut(s) | 1047 |
| Mox20I | TGGCCA | 1 cut(s) | 981 |
| Mph1103I | ATGCAT | 2 cut(s) | 1048, 1228 |
| MroNI | GCCGGC | 1 cut(s) | 412 |
| MscI | TGGCCA | 1 cut(s) | 981 |
| Msp20I | TGGCCA | 1 cut(s) | 981 |
| MspA1I | CMGCKG | 2 cut(s) | 1739, 1793 |
| MspI | CCGG | 3 cut(s) | 413, 733, 1611 |
| MspR9I | CCNGG | 2 cut(s) | 38, 1662 |
| MvaI | CCWGG | 2 cut(s) | 38, 1662 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 279, 422, 431, 458, 1022, 1576, 1605, 1694 |
| NaeI | GCCGGC | 1 cut(s) | 414 |
| NdeII | GATC | 5 cut(s) | 823, 835, 1174, 1321, 1751 |
| NgoMIV | GCCGGC | 1 cut(s) | 412 |
| NlaIII | CATG | 6 cut(s) | 171, 731, 942, 1175, 1730, 1847 |
| NlaIV | GGNNCC | 2 cut(s) | 1263, 1609 |
| NmeAIII | GCCGAG | 2 cut(s) | 802, 1478 |
| NmuCI | GTSAC | 1 cut(s) | 248 |
| NsiI | ATGCAT | 2 cut(s) | 1048, 1228 |
| NspV | TTCGAA | 1 cut(s) | 901 |
| PceI | AGGCCT | 1 cut(s) | 1621 |
| PdiI | GCCGGC | 1 cut(s) | 414 |
| PfeI | GAWTC | 6 cut(s) | 224, 285, 488, 536, 956, 1656 |
| PkrI | GCNGC | 3 cut(s) | 1015, 1601, 1792 |
| PleI | GAGTC | 2 cut(s) | 393, 1731 |
| PpsI | GAGTC | 2 cut(s) | 393, 1731 |
| Psp6I | CCWGG | 2 cut(s) | 36, 1660 |
| PspGI | CCWGG | 2 cut(s) | 36, 1660 |
| PspN4I | GGNNCC | 2 cut(s) | 1263, 1609 |
| PspPI | GGNCC | 4 cut(s) | 22, 674, 1001, 1261 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1213 |
| PsuI | RGATCY | 1 cut(s) | 1321 |
| PvuII | CAGCTG | 2 cut(s) | 1739, 1793 |
| SatI | GCNGC | 3 cut(s) | 1014, 1600, 1791 |
| Sau3AI | GATC | 5 cut(s) | 823, 835, 1174, 1321, 1751 |
| Sau96I | GGNCC | 4 cut(s) | 22, 674, 1001, 1261 |
| SchI | GAGTC | 2 cut(s) | 393, 1732 |
| ScrFI | CCNGG | 2 cut(s) | 38, 1662 |
| SduI | GDGCHC | 2 cut(s) | 1610, 1736 |
| SfaNI | GCATC | 5 cut(s) | 56, 228, 1213, 1235, 1470 |
| SfcI | CTRYAG | 1 cut(s) | 951 |
| SfuI | TTCGAA | 1 cut(s) | 901 |
| SinI | GGWCC | 2 cut(s) | 1001, 1261 |
| SmlI | CTYRAG | 3 cut(s) | 1445, 1615, 1871 |
| SmoI | CTYRAG | 3 cut(s) | 1445, 1615, 1871 |
| SpeI | ACTAGT | 1 cut(s) | 8 |
| Sse9I | AATT | 8 cut(s) | 108, 310, 1037, 1119, 1248, 1256, 1330, 1396 |
| SseBI | AGGCCT | 1 cut(s) | 1621 |
| SsiI | CCGC | 2 cut(s) | 282, 1406 |
| SspI | AATATT | 1 cut(s) | 1669 |
| SspMI | CTAG | 6 cut(s) | 9, 242, 279, 969, 1220, 1572 |
| StuI | AGGCCT | 1 cut(s) | 1621 |
| StyD4I | CCNGG | 2 cut(s) | 36, 1660 |
| StyI | CCWWGG | 4 cut(s) | 426, 827, 968, 982 |
| TaaI | ACNGT | 3 cut(s) | 563, 749, 1585 |
| TaiI | ACGT | 2 cut(s) | 255, 886 |
| TaqI | TCGA | 4 cut(s) | 341, 617, 901, 1198 |
| TasI | AATT | 8 cut(s) | 108, 310, 1037, 1119, 1248, 1256, 1330, 1396 |
| TfiI | GAWTC | 6 cut(s) | 224, 285, 488, 536, 956, 1656 |
| TscAI | CASTG | 1 cut(s) | 1648 |
| TseFI | GTSAC | 1 cut(s) | 248 |
| TseI | GCWGC | 3 cut(s) | 1013, 1599, 1790 |
| Tsp45I | GTSAC | 1 cut(s) | 248 |
| TspDTI | ATGAA | 4 cut(s) | 156, 200, 807, 1796 |
| TspRI | CASTG | 1 cut(s) | 1648 |
| VpaK11BI | GGWCC | 2 cut(s) | 1001, 1261 |
| XapI | RAATTY | 4 cut(s) | 1037, 1119, 1330, 1396 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 989 |
| XmaJI | CCTAGG | 1 cut(s) | 968 |
| XspI | CTAG | 6 cut(s) | 9, 242, 279, 969, 1220, 1572 |
| Zsp2I | ATGCAT | 2 cut(s) | 1048, 1228 |