Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009958

Physical Location & Seq

Genomic Coordinates Reverse (-)

3275254 .. 3275781

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTGTAAATTTTGGGGTGACCATAAAGGAGTTGCGCAAGCATGATCTTAATATGGCTGCTGATAATCGACCCCATCAGGGTCTGCTTCTAGATGCTTCCCCATTGGAGATGGTTAAAATTAAGGAATTGGACCCTATTTCAGTCGAGGAAGACAAGGGTGCTCTTTGGGTAGCTTTGGATGAGGTTACAGATCCTCAAAATTTGGGGGCAATCATCAGGTCCTCTCACTACTTTGGAGCTGCAGGGGTGGTGTTATGTGCAAAGAATTCAGCCTCGCTGAGTGGTGTTGTGAGTAAAGCGAGTGCAGGCTCACTTGAGTTAATAGAGTTGCGATATTGTAAGAACATGATGCAGTTTCTAACATCCTCATCTGAAAATGGTTGGCGTGTTCTTGGCGGTTCTGTTTCTAGCAAAGCTATTCCCTTGAATGAGATAGTACCTAGTGAACCAACCATTCTTGTTCTGGGTAGTGAGGGCACTGGGTTGAGGCCTTTGGTGGAAAGATCTTGCACTCAATTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070039 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase SpoU_sub_bind

Protein Analysis

176

Amino Acids

18.74

Weight (kDa)

5.39

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SpoU_methylase	PF00588	56 - 175	4.2e-24	SpoU rRNA Methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19870
fragaria_vesca	FvH4_1g06150 FvH4_1g06190
malus_domestica	MD02G1065700.v1.1 MD15G1196600.v1.1
prunus_persica	Prupe.7G219800_v2.0.a1 Prupe.7G219800_v2.0.a1
pyrus_communis	pycom02g05180 pycom02g05220 pycom15g17570
rosa_chinensis	RchiOBHm_Chr2g0091911
rosa_laevigata	RLG00000016260
rosa_multiflora	Rmu_sc0031557.1_g000002 Rmu_sc0031558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149620
rosa_rugosa	Rorug02G0021600
rosa_samantha	Rh2AG067200 Rh2BG066400 Rh2CG067700 Rh2DG066300
rosa_wichuraiana	Rw2G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	38
AciI	CCGC	1 cut(s)	399
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	3 cut(s)	10, 202, 268
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	430
AluBI	AGCT	3 cut(s)	176, 242, 419
AluI	AGCT	3 cut(s)	176, 242, 419
Alw21I	GWGCWC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	188
AlwNI	CAGNNNCTG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	491
ApeKI	GCWGC	2 cut(s)	59, 242
ApoI	RAATTY	3 cut(s)	10, 202, 268
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	133, 222
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	133, 222
BaeGI	GKGCMC	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	2 cut(s)	46, 229
BccI	CCATC	2 cut(s)	84, 106
BfaI	CTAG	3 cut(s)	92, 411, 444
BfmI	CTRYAG	1 cut(s)	243
BglII	AGATCT	1 cut(s)	506
BisI	GCNGC	2 cut(s)	60, 243
BlsI	GCNGC	2 cut(s)	61, 244
Bme18I	GGWCC	2 cut(s)	133, 222
BmgT120I	GGNCC	2 cut(s)	133, 222
BmiI	GGNNCC	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	492
BmsI	GCATC	2 cut(s)	85, 342
BmuI	ACTGGG	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	487
BseGI	GGATG	2 cut(s)	187, 365
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	487
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	2 cut(s)	46, 229
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	493
BsiHKAI	GWGCWC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	80
BsnI	GGCC	1 cut(s)	493
Bsp1286I	GDGCHC	2 cut(s)	166, 482
Bsp143I	GATC	3 cut(s)	46, 193, 506
BspACI	CCGC	1 cut(s)	399
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	135
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	487
BssMI	GATC	3 cut(s)	46, 193, 506
BstC8I	GCNNGC	2 cut(s)	41, 310
BstDEI	CTNAG	1 cut(s)	281
BstEII	GGTNACC	1 cut(s)	19
BstF5I	GGATG	2 cut(s)	187, 365
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	3 cut(s)	49, 196, 509
BstMBI	GATC	3 cut(s)	46, 193, 506
BstPI	GGTNACC	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	482
BstV1I	GCAGC	2 cut(s)	46, 229
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	2 cut(s)	193, 506
BstYI	RGATCY	2 cut(s)	193, 506
BsuRI	GGCC	1 cut(s)	493
BtsCI	GGATG	2 cut(s)	187, 365
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	2 cut(s)	41, 310
CaiI	CAGNNNCTG	1 cut(s)	85
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	133, 222
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	2 cut(s)	44, 349
CviJI	RGCY	8 cut(s)	5, 59, 176, 242, 275, 312, 419, 493
CviKI_1	RGCY	8 cut(s)	5, 59, 176, 242, 275, 312, 419, 493
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	3 cut(s)	48, 195, 508
DpnII	GATC	3 cut(s)	46, 193, 506
Eco147I	AGGCCT	1 cut(s)	493
Eco47I	GGWCC	2 cut(s)	133, 222
Eco91I	GGTNACC	1 cut(s)	19
EcoO109I	RGGNCCY	1 cut(s)	222
EcoO65I	GGTNACC	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	268
FaeI	CATG	2 cut(s)	47, 352
FaiI	YATR	5 cut(s)	26, 45, 56, 259, 350
FatI	CATG	2 cut(s)	43, 348
Fnu4HI	GCNGC	2 cut(s)	60, 243
FokI	GGATG	2 cut(s)	194, 352
Fsp4HI	GCNGC	2 cut(s)	60, 243
FspBI	CTAG	3 cut(s)	92, 411, 444
FspI	TGCGCA	1 cut(s)	38
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	2 cut(s)	60, 243
HaeIII	GGCC	1 cut(s)	493
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	47, 352
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	449
HpyCH4V	TGCA	5 cut(s)	245, 263, 308, 355, 513
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	2 cut(s)	47, 352
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	46, 193, 506
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	6 cut(s)	65, 205, 231, 294, 452, 468
Lsp1109I	GCAGC	2 cut(s)	46, 229
LweI	GCATC	2 cut(s)	85, 342
MaeI	CTAG	3 cut(s)	92, 411, 444
MaeIII	GTNAC	2 cut(s)	19, 187
MalI	GATC	3 cut(s)	48, 195, 508
MboI	GATC	3 cut(s)	46, 193, 506
MboII	GAAGA	1 cut(s)	164
MfeI	CAATTG	1 cut(s)	518
MflI	RGATCY	2 cut(s)	193, 506
MhlI	GDGCHC	2 cut(s)	166, 482
MluCI	AATT	6 cut(s)	10, 120, 128, 202, 268, 518
MnlI	CCTC	8 cut(s)	142, 178, 207, 235, 286, 379, 469, 483
MseI	TTAA	4 cut(s)	51, 117, 123, 323
MunI	CAATTG	1 cut(s)	518
NdeII	GATC	3 cut(s)	46, 193, 506
NlaIII	CATG	2 cut(s)	47, 352
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	19
NsbI	TGCGCA	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	493
PkrI	GCNGC	2 cut(s)	61, 244
PpuMI	RGGWCCY	1 cut(s)	222
Psp5II	RGGWCCY	1 cut(s)	222
PspEI	GGTNACC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	133, 222
PspPPI	RGGWCCY	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	193, 506
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
SaqAI	TTAA	4 cut(s)	51, 117, 123, 323
SatI	GCNGC	2 cut(s)	60, 243
Sau3AI	GATC	3 cut(s)	46, 193, 506
Sau96I	GGNCC	2 cut(s)	133, 222
SduI	GDGCHC	2 cut(s)	166, 482
SetI	ASST	6 cut(s)	178, 189, 224, 244, 421, 445
SfaNI	GCATC	2 cut(s)	85, 342
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	2 cut(s)	133, 222
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	6 cut(s)	10, 120, 128, 202, 268, 518
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	1 cut(s)	399
SspMI	CTAG	3 cut(s)	92, 411, 444
StuI	AGGCCT	1 cut(s)	493
TaqI	TCGA	2 cut(s)	70, 147
TasI	AATT	6 cut(s)	10, 120, 128, 202, 268, 518
Tru1I	TTAA	4 cut(s)	51, 117, 123, 323
Tru9I	TTAA	4 cut(s)	51, 117, 123, 323
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	59, 242
Tsp45I	GTSAC	1 cut(s)	19
TspRI	CASTG	1 cut(s)	487
VpaK11BI	GGWCC	2 cut(s)	133, 222
XapI	RAATTY	3 cut(s)	10, 202, 268
XbaI	TCTAGA	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XspI	CTAG	3 cut(s)	92, 411, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.