Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009958

Physical Location & Seq

Genomic Coordinates Reverse (-)

3427500 .. 3429876

Gene Structure 2377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTTGGATTTAGACAAGAAATATACCCGTAATGCAGCATATGACACTACATGCTTCTTTCACATTCATTATATAATGCCTGGTTTACAGTCAAAACATACTTTTTCAGTGATTCTGCTTTGTTTTGGTTTTACAATGTTCGGAGAGGCAAGAGTTAGGCGCTTGGGGATGATCGCAAAAACAATTTGCAGAAGAAAATGCAGAGAAGAAGTAGGAGAAGAAGAAGAAATGGAGGCAGTTGATGATCCAAGGTGGGATCGTATTCAAAACAAGTTCAGGGGAATGGAAAATGTAAAACCTGGACGTGAGAGACCTGAGTTTCGAAGGTGGAATAGGCAGGAAGATTGGGGTAAGAAGACATGGAAAGAGGCTACTGAATCGTCCGTGCCTAGGATGATTGGCCGAAGTGTTTATGGTGTTGGTCCAGTTTTGGCTTCTTTGTCAGCTGGAAGAAGAGAATTTTATGCATTGTATATTCAAGAAGGGATGGATTTGAGCAAAAATAATAGGAAGAAGAAGGACAAGGGCTTTGAGAGAATTTTAATGATGGCTGACAAGATTGGGTTAAACGTAAAGGATGGTCTGGTTCTAGATGCCTCTCCGTTGGAGATGGTGAAAATTAACGAATTAGAACCTGTTTCAGTTGAGGAAGATAAGAGTTCTCTCTGGATTGCTTTGGATGAGGTTACAGATCCTCAGAATGTGGGGTCAATCATCAGGTCGTCTTACTTCTTTGGAGCTTCTGGGGTGGTATTATGTGCCAAGAATTCAGCCCCACTGAGTGGCGTTGTGAGCAAAGCAAGTGCAGGCTCACTTGAGTTGATGGAGTTGAGATACTGCAAGAATATGATGCAGTTCCTAACATCCTCGGCTCTACCCTTGAAAGAGGTTGCACCTAGTGTGCCAACAATTCTTGTTCTGGGAAGTGAGGGTACTGGGTTGAGACCTTTGGTGGAAAGATCTTTTGATGATACTGAAACCGTGGAAGAGAATCATGCATGCTCAGCTGAAGAGTTCCGATCATTTTTGGCCGTGGAGAGCTTAAATGTCAGTGTTGCAGCTGGTGTGCTGCTTCATCGCTTAACAGGAAACAATAACGATGAGAATGTCCATGTAGTTAATCAACAGACTGACGAACTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070039 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase SpoU_sub_bind

Protein Analysis

382

Amino Acids

42.91

Weight (kDa)

5.74

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19870
fragaria_vesca	FvH4_1g06150 FvH4_1g06190
malus_domestica	MD02G1065700.v1.1 MD15G1196600.v1.1
prunus_persica	Prupe.7G219800_v2.0.a1 Prupe.7G219800_v2.0.a1
pyrus_communis	pycom02g05180 pycom02g05220 pycom15g17570
rosa_chinensis	RchiOBHm_Chr2g0091911
rosa_laevigata	RLG00000016260
rosa_multiflora	Rmu_sc0031557.1_g000002 Rmu_sc0031558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149620
rosa_rugosa	Rorug02G0021600
rosa_samantha	Rh2AG067200 Rh2BG066400 Rh2CG067700 Rh2DG066300
rosa_wichuraiana	Rw2G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	782
AclWI	GGATC	3 cut(s)	239, 264, 686
AcoI	YGGCCR	2 cut(s)	400, 1029
AcsI	RAATTY	3 cut(s)	458, 537, 766
AcuI	CTGAAG	1 cut(s)	1029
AdeI	CACNNNGTG	2 cut(s)	782, 899
AfaI	GTAC	1 cut(s)	934
AfiI	CCNNNNNNNGG	2 cut(s)	390, 782
AgsI	TTSAA	3 cut(s)	266, 479, 883
AjiI	CACGTC	1 cut(s)	305
AjnI	CCWGG	2 cut(s)	79, 298
AluBI	AGCT	5 cut(s)	446, 740, 1007, 1041, 1061
AluI	AGCT	5 cut(s)	446, 740, 1007, 1041, 1061
Alw26I	GTCTC	2 cut(s)	304, 937
AlwI	GGATC	3 cut(s)	239, 264, 686
AoxI	GGCC	2 cut(s)	400, 1029
ApeKI	GCWGC	3 cut(s)	35, 1058, 1069
ApoI	RAATTY	3 cut(s)	458, 537, 766
ArsI	GACNNNNNNTTYG	4 cut(s)	303, 335, 512, 544
AspA2I	CCTAGG	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	625
AsuII	TTCGAA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	422
AvrII	CCTAGG	1 cut(s)	389
BarI	GAAGNNNNNNTAC	2 cut(s)	916, 948
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	3 cut(s)	47, 1056, 1070
BccI	CCATC	5 cut(s)	481, 541, 572, 604, 817
BceAI	ACGGC	1 cut(s)	1016
BciT130I	CCWGG	2 cut(s)	81, 300
BcoDI	GTCTC	2 cut(s)	304, 937
BfaI	CTAG	3 cut(s)	390, 590, 897
BfoI	RGCGCY	1 cut(s)	163
BglII	AGATCT	1 cut(s)	959
BisI	GCNGC	3 cut(s)	36, 1059, 1070
BlnI	CCTAGG	1 cut(s)	389
BlpI	GCTNAGC	1 cut(s)	1003
BlsI	GCNGC	3 cut(s)	37, 1060, 1071
Bme1390I	CCNGG	2 cut(s)	81, 300
Bme18I	GGWCC	1 cut(s)	422
BmgBI	CACGTC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	422
BmrFI	CCNGG	2 cut(s)	81, 300
BmrI	ACTGGG	1 cut(s)	945
BmsI	GCATC	2 cut(s)	583, 840
BmuI	ACTGGG	1 cut(s)	945
BpiI	GAAGAC	1 cut(s)	362
Bpu1102I	GCTNAGC	1 cut(s)	1003
Bpu14I	TTCGAA	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	836
BsaI	GGTCTC	2 cut(s)	304, 937
BsaJI	CCNNGG	5 cut(s)	248, 389, 867, 981, 1032
Bsc4I	CCNNNNNNNGG	2 cut(s)	390, 782
Bse1I	ACTGG	2 cut(s)	425, 940
BseBI	CCWGG	2 cut(s)	81, 300
BseDI	CCNNGG	5 cut(s)	248, 389, 867, 981, 1032
BseGI	GGATG	6 cut(s)	174, 399, 492, 583, 685, 863
BseLI	CCNNNNNNNGG	2 cut(s)	390, 782
BseMII	CTCAG	4 cut(s)	306, 710, 770, 1017
BseNI	ACTGG	2 cut(s)	425, 940
BseXI	GCAGC	3 cut(s)	47, 1056, 1070
BsgI	GTGCAG	1 cut(s)	825
BshFI	GGCC	2 cut(s)	402, 1031
BslI	CCNNNNNNNGG	2 cut(s)	390, 782
BsmAI	GTCTC	2 cut(s)	304, 937
BsnI	GGCC	2 cut(s)	402, 1031
Bso31I	GGTCTC	2 cut(s)	304, 937
Bsp119I	TTCGAA	1 cut(s)	322
Bsp143I	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
Bsp1720I	GCTNAGC	1 cut(s)	1003
BspANI	GGCC	2 cut(s)	402, 1031
BspCNI	CTCAG	4 cut(s)	307, 709, 771, 1016
BspPI	GGATC	3 cut(s)	239, 264, 686
BspT104I	TTCGAA	1 cut(s)	322
BspTNI	GGTCTC	2 cut(s)	304, 937
BsrI	ACTGG	2 cut(s)	425, 940
BssECI	CCNNGG	5 cut(s)	248, 389, 867, 981, 1032
BssMI	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
BssT1I	CCWWGG	2 cut(s)	248, 389
Bst2UI	CCWGG	2 cut(s)	81, 300
Bst4CI	ACNGT	2 cut(s)	90, 982
Bst6I	CTCTTC	3 cut(s)	448, 981, 1005
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	2 cut(s)	808, 1000
BstDEI	CTNAG	4 cut(s)	315, 696, 779, 1003
BstDSI	CCRYGG	2 cut(s)	981, 1032
BstF5I	GGATG	6 cut(s)	174, 399, 492, 583, 685, 863
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	6 cut(s)	174, 247, 259, 694, 962, 1022
BstMAI	GTCTC	2 cut(s)	304, 937
BstMBI	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
BstMWI	GCNNNNNNNGC	2 cut(s)	792, 1004
BstNI	CCWGG	2 cut(s)	81, 300
BstNSI	RCATGY	2 cut(s)	54, 1002
BstSCI	CCNGG	2 cut(s)	79, 298
BstV1I	GCAGC	3 cut(s)	47, 1056, 1070
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	2 cut(s)	691, 959
BstYI	RGATCY	2 cut(s)	691, 959
BsuRI	GGCC	2 cut(s)	402, 1031
BtgI	CCRYGG	2 cut(s)	981, 1032
BtgZI	GCGATG	1 cut(s)	1061
BtrI	CACGTC	1 cut(s)	305
BtsCI	GGATG	6 cut(s)	174, 399, 492, 583, 685, 863
BtsIMutI	CAGTG	3 cut(s)	114, 776, 1057
Cac8I	GCNNGC	2 cut(s)	808, 1000
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	933
CviAII	CATG	5 cut(s)	51, 360, 995, 999, 1112
CviQI	GTAC	1 cut(s)	933
DdeI	CTNAG	4 cut(s)	315, 696, 779, 1003
DpnI	GATC	6 cut(s)	173, 246, 258, 693, 961, 1021
DpnII	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
DraIII	CACNNNGTG	2 cut(s)	782, 899
EaeI	YGGCCR	2 cut(s)	400, 1029
Eam1104I	CTCTTC	3 cut(s)	448, 981, 1005
EarI	CTCTTC	3 cut(s)	448, 981, 1005
Eco130I	CCWWGG	2 cut(s)	248, 389
Eco31I	GGTCTC	2 cut(s)	304, 937
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	1029
EcoRI	GAATTC	1 cut(s)	766
EcoRII	CCWGG	2 cut(s)	79, 298
EcoT14I	CCWWGG	2 cut(s)	248, 389
EcoT22I	ATGCAT	2 cut(s)	469, 1000
ErhI	CCWWGG	2 cut(s)	248, 389
FaeI	CATG	5 cut(s)	54, 363, 998, 1002, 1115
FatI	CATG	5 cut(s)	50, 359, 994, 998, 1111
FauNDI	CATATG	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	36, 1059, 1070
FokI	GGATG	6 cut(s)	181, 406, 499, 590, 692, 850
Fsp4HI	GCNGC	3 cut(s)	36, 1059, 1070
FspBI	CTAG	3 cut(s)	390, 590, 897
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	3 cut(s)	36, 1059, 1070
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	402, 1031
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	5 cut(s)	54, 363, 998, 1002, 1115
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	112, 377, 991
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	3 cut(s)	143, 699, 1019
Hpy188III	TCNNGA	3 cut(s)	479, 590, 667
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	3 cut(s)	318, 476, 511
HpyCH4III	ACNGT	2 cut(s)	90, 982
HpyCH4IV	ACGT	2 cut(s)	304, 570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	792, 1004
HpyF3I	CTNAG	4 cut(s)	315, 696, 779, 1003
HpySE526I	ACGT	2 cut(s)	304, 570
Hsp92II	CATG	5 cut(s)	54, 363, 998, 1002, 1115
HspAI	GCGC	1 cut(s)	160
Kzo9I	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
LmnI	GCTCC	1 cut(s)	737
Lsp1109I	GCAGC	3 cut(s)	47, 1056, 1070
LweI	GCATC	2 cut(s)	583, 840
MaeI	CTAG	3 cut(s)	390, 590, 897
MaeII	ACGT	2 cut(s)	304, 570
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	6 cut(s)	173, 246, 258, 693, 961, 1021
MboI	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
MflI	RGATCY	2 cut(s)	691, 959
MluCI	AATT	7 cut(s)	183, 458, 537, 618, 626, 766, 909
MmeI	TCCRAC	1 cut(s)	585
Mph1103I	ATGCAT	2 cut(s)	469, 1000
MseI	TTAA	6 cut(s)	542, 566, 621, 1043, 1082, 1119
MspA1I	CMGCKG	3 cut(s)	446, 1007, 1061
MspR9I	CCNGG	2 cut(s)	81, 300
MvaI	CCWGG	2 cut(s)	81, 300
MwoI	GCNNNNNNNGC	2 cut(s)	792, 1004
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
NlaIII	CATG	5 cut(s)	54, 363, 998, 1002, 1115
NmeAIII	GCCGAG	1 cut(s)	848
NsiI	ATGCAT	2 cut(s)	469, 1000
NspI	RCATGY	2 cut(s)	54, 1002
NspV	TTCGAA	1 cut(s)	322
PaeI	GCATGC	1 cut(s)	1002
PfeI	GAWTC	3 cut(s)	112, 377, 991
PflMI	CCANNNNNTGG	1 cut(s)	782
PkrI	GCNGC	3 cut(s)	37, 1060, 1071
Psp6I	CCWGG	2 cut(s)	79, 298
PspGI	CCWGG	2 cut(s)	79, 298
PspPI	GGNCC	1 cut(s)	422
PsuI	RGATCY	2 cut(s)	691, 959
PvuII	CAGCTG	3 cut(s)	446, 1007, 1061
RsaI	GTAC	1 cut(s)	934
RsaNI	GTAC	1 cut(s)	933
SaqAI	TTAA	6 cut(s)	542, 566, 621, 1043, 1082, 1119
SatI	GCNGC	3 cut(s)	36, 1059, 1070
Sau3AI	GATC	6 cut(s)	171, 244, 256, 691, 959, 1019
Sau96I	GGNCC	1 cut(s)	422
ScrFI	CCNGG	2 cut(s)	81, 300
SfaNI	GCATC	2 cut(s)	583, 840
SfuI	TTCGAA	1 cut(s)	322
SinI	GGWCC	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
SphI	GCATGC	1 cut(s)	1002
Sse9I	AATT	7 cut(s)	183, 458, 537, 618, 626, 766, 909
SspMI	CTAG	3 cut(s)	390, 590, 897
StyD4I	CCNGG	2 cut(s)	79, 298
StyI	CCWWGG	2 cut(s)	248, 389
TaaI	ACNGT	2 cut(s)	90, 982
TaiI	ACGT	2 cut(s)	307, 573
TaqI	TCGA	1 cut(s)	322
TasI	AATT	7 cut(s)	183, 458, 537, 618, 626, 766, 909
TfiI	GAWTC	3 cut(s)	112, 377, 991
Tru1I	TTAA	6 cut(s)	542, 566, 621, 1043, 1082, 1119
Tru9I	TTAA	6 cut(s)	542, 566, 621, 1043, 1082, 1119
TscAI	CASTG	3 cut(s)	114, 783, 1057
TseI	GCWGC	3 cut(s)	35, 1058, 1069
TspDTI	ATGAA	2 cut(s)	56, 1064
TspGWI	ACGGA	2 cut(s)	373, 591
TspRI	CASTG	3 cut(s)	114, 783, 1057
Van91I	CCANNNNNTGG	1 cut(s)	782
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	3 cut(s)	458, 537, 766
XbaI	TCTAGA	1 cut(s)	589
XceI	RCATGY	2 cut(s)	54, 1002
XmaJI	CCTAGG	1 cut(s)	389
XspI	CTAG	3 cut(s)	390, 590, 897
Zsp2I	ATGCAT	2 cut(s)	469, 1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.