Rmu_sc0031558.1_g000001

rRNA methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031558.1
Physical Location & Seq
Forward (+)
1 .. 1641
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031558.1_g000001.1.cds

Sequence Viewer

Length: 1522 bp
tcgggggggtaatggagagagtagtagtgtgggaagaagtggaaatagactgccgtggttggcagctaaggaagcaaagagattggagcagcgagcaacggctacaaaaatacctctttcatcttggggggagtctgctaagaggttagagaaagacagcaatactggttcttctggggaagaggccatgagtttggccaggagtagagggggagaccgccatagtaagtcctcatgggaaaaatcagcaaaaagggtagaggaagaaagaaagccgaaaactgagcgttcttcttgggaggtgtcttcagaaggttttgttgggaatggtggtccatcggaaaagaggagtgcagaaagaagaattggaatggtgaaggataggcgaagtgagtatagcgtgagggatagaagacaggaagaagccaactcagaagggagtggagaggaggaagaaatggatgttggtgacgatccaaggtgggatcagatcaagaataagtttaggagaatggaagatgtcaaatctgagaaacctgagtatcgaaggtgggataggcaggaaaattggggcagaaagacatggcaagaggctagtgaatcgtcggtgcctagactggttggccaaggtgtttatggtgttggtccagttttggctgctttgtcagctggaagaagagaattttatacgttgtatgttcaagaagggctggatttgagcaataataataggaagaagaaggacaagaagggatttgagagagttttgaggatggctgaaaattttggggtgaacataaaggaattgcgcaagcatgatcttaatatggccgctgataatcgaccccatcagggtctgcttctagatgcctctccattggagatggttaaaattaaggaattggaccctgtttcagtagaggaagataagggttctctttgggtagctttggatgaggttacagatcctcaaaatttgggggcaatcatcaggtcctcttacttctttggagctgcaggcgtggtgttatgcgcaaagaattcagccccactgagtggcgttgtgagcaaagcaagtgcaggctcacttgagttaatggagttgcgatattgcaagaacatgatgcagtttctaacatcctcagctgaaaatggttggcgtgttcttggtggttctgtttctagcaaagctattcctttgaatgagatagtacctagtgaaccaaccattcttgttctgggtagtgagggcactgggttgaggcctttggtggaaagatcatgcactcaattgattagaatccccgggaatattcctgcagatgtagctgctgctggttttgacgatagcgaatccgtggaagtgaagcatgggtgctctgctgaagagttccagtcgtttttggctgtggagagcttaaatgtcagtgttgcagctggtgtgcttcttcatcacttagtgggaaacaatgagaaaagtgaagttcatgtggttgctcagcagaataacggactggattga

Protein Analysis

506

Amino Acids

55.76

Weight (kDa)

6.32

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 810, 1034
AccB1I GGYRCC 1 cut(s) 608
AccB7I CCANNNNNTGG 1 cut(s) 1056
AciI CCGC 2 cut(s) 218, 832
AclWI GGATC 3 cut(s) 468, 493, 960
AcoI YGGCCR 3 cut(s) 196, 623, 829
AcsI RAATTY 4 cut(s) 681, 782, 974, 1040
AcuI CTGAAG 2 cut(s) 292, 1405
AdeI CACNNNGTG 2 cut(s) 1056, 1460
AfaI GTAC 1 cut(s) 1213
AfiI CCNNNNNNNGG 2 cut(s) 852, 1056
AgsI TTSAA 2 cut(s) 702, 1202
AjnI CCWGG 1 cut(s) 198
AjuI GAANNNNNNNTTGG 6 cut(s) 304, 336, 349, 381, 448, 480
AluBI AGCT 9 cut(s) 66, 669, 948, 1014, 1146, 1191, 1329, 1417, 1437
AluI AGCT 9 cut(s) 66, 669, 948, 1014, 1146, 1191, 1329, 1417, 1437
Alw21I GWGCWC 1 cut(s) 1380
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 3 cut(s) 468, 493, 960
AlwNI CAGNNNCTG 1 cut(s) 857
Ama87I CYCGRG 1 cut(s) 1305
AoxI GGCC 5 cut(s) 184, 196, 623, 829, 1263
ApeKI GCWGC 7 cut(s) 63, 89, 657, 1014, 1329, 1332, 1434
ApoI RAATTY 4 cut(s) 681, 782, 974, 1040
AspLEI GCGC 2 cut(s) 811, 1035
AspS9I GGNCC 4 cut(s) 333, 645, 905, 994
AsuC2I CCSGG 2 cut(s) 1306, 1307
AsuHPI GGTGA 3 cut(s) 386, 480, 803
AvaI CYCGRG 1 cut(s) 1305
AvaII GGWCC 4 cut(s) 333, 645, 905, 994
BaeGI GKGCMC 1 cut(s) 1254
BaeI ACNNNNGTAYC 2 cut(s) 525, 558
BalI TGGCCA 2 cut(s) 198, 625
BanI GGYRCC 1 cut(s) 608
BbsI GAAGAC 2 cut(s) 298, 419
Bbv12I GWGCWC 1 cut(s) 1380
BbvCI CCTCAGC 1 cut(s) 1142
BbvI GCAGC 7 cut(s) 75, 101, 644, 1001, 1316, 1319, 1446
BccI CCATC 4 cut(s) 344, 767, 856, 878
BceAI ACGGC 2 cut(s) 38, 115
BciT130I CCWGG 1 cut(s) 200
BcnI CCSGG 2 cut(s) 1306, 1307
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 5 cut(s) 595, 613, 864, 1183, 1216
BfmI CTRYAG 2 cut(s) 1015, 1318
BisI GCNGC 8 cut(s) 64, 90, 658, 832, 1015, 1330, 1333, 1435
BlpI GCTNAGC 1 cut(s) 1498
BlsI GCNGC 8 cut(s) 65, 91, 659, 833, 1016, 1331, 1334, 1436
Bme1390I CCNGG 3 cut(s) 200, 1306, 1307
Bme18I GGWCC 4 cut(s) 333, 645, 905, 994
BmeT110I CYCGRG 1 cut(s) 1305
BmgT120I GGNCC 4 cut(s) 333, 645, 905, 994
BmiI GGNNCC 2 cut(s) 610, 907
BmrFI CCNGG 3 cut(s) 200, 1306, 1307
BmrI ACTGGG 1 cut(s) 1264
BmsI GCATC 2 cut(s) 857, 1114
BmuI ACTGGG 1 cut(s) 1264
BpiI GAAGAC 2 cut(s) 298, 419
Bpu10I CCTNAGC 2 cut(s) 67, 1142
Bpu1102I GCTNAGC 1 cut(s) 1498
BpuEI CTTGAG 1 cut(s) 1110
BpuMI CCSGG 2 cut(s) 1306, 1307
BsaBI GATNNNNATC 1 cut(s) 1299
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 6 cut(s) 54, 477, 626, 1304, 1305, 1357
Bsc4I CCNNNNNNNGG 2 cut(s) 852, 1056
Bse1I ACTGG 6 cut(s) 170, 622, 648, 1259, 1394, 1519
Bse8I GATNNNNATC 1 cut(s) 1299
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 6 cut(s) 54, 477, 626, 1304, 1305, 1357
BseGI GGATG 4 cut(s) 467, 778, 959, 1137
BseJI GATNNNNATC 1 cut(s) 1299
BseLI CCNNNNNNNGG 2 cut(s) 852, 1056
BseMII CTCAG 7 cut(s) 274, 445, 520, 529, 1044, 1156, 1512
BseNI ACTGG 6 cut(s) 170, 622, 648, 1259, 1394, 1519
BseRI GAGGAG 2 cut(s) 362, 462
BseSI GKGCMC 1 cut(s) 1254
BseXI GCAGC 7 cut(s) 75, 101, 644, 1001, 1316, 1319, 1446
BsgI GTGCAG 2 cut(s) 373, 1099
BshFI GGCC 5 cut(s) 186, 198, 625, 831, 1265
BshNI GGYRCC 1 cut(s) 608
BsiHKAI GWGCWC 1 cut(s) 1380
BsiHKCI CYCGRG 1 cut(s) 1305
BsiSI CCGG 1 cut(s) 1306
BslI CCNNNNNNNGG 2 cut(s) 852, 1056
BsmAI GTCTC 1 cut(s) 208
BsnI GGCC 5 cut(s) 186, 198, 625, 831, 1265
Bso31I GGTCTC 1 cut(s) 208
BsoBI CYCGRG 1 cut(s) 1305
Bsp1286I GDGCHC 2 cut(s) 1254, 1380
Bsp143I GATC 6 cut(s) 473, 485, 490, 818, 965, 1278
Bsp1720I GCTNAGC 1 cut(s) 1498
BspACI CCGC 2 cut(s) 218, 832
BspANI GGCC 5 cut(s) 186, 198, 625, 831, 1265
BspCNI CTCAG 7 cut(s) 275, 444, 521, 530, 1045, 1155, 1511
BspLI GGNNCC 2 cut(s) 610, 907
BspMAI CTGCAG 2 cut(s) 1019, 1322
BspPI GGATC 3 cut(s) 468, 493, 960
BspT107I GGYRCC 1 cut(s) 608
BspTNI GGTCTC 1 cut(s) 208
BsrI ACTGG 6 cut(s) 170, 622, 648, 1259, 1394, 1519
BssECI CCNNGG 6 cut(s) 54, 477, 626, 1304, 1305, 1357
BssMI GATC 6 cut(s) 473, 485, 490, 818, 965, 1278
BssT1I CCWWGG 2 cut(s) 477, 626
Bst2UI CCWGG 1 cut(s) 200
Bst6I CTCTTC 3 cut(s) 175, 671, 1381
BstC8I GCNNGC 4 cut(s) 94, 813, 1019, 1082
BstDSI CCRYGG 2 cut(s) 54, 1357
BstF5I GGATG 4 cut(s) 467, 778, 959, 1137
BstHHI GCGC 2 cut(s) 811, 1035
BstKTI GATC 6 cut(s) 476, 488, 493, 821, 968, 1281
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 6 cut(s) 473, 485, 490, 818, 965, 1278
BstMWI GCNNNNNNNGC 4 cut(s) 72, 666, 1066, 1326
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 3 cut(s) 198, 1304, 1305
BstSFI CTRYAG 2 cut(s) 1015, 1318
BstSLI GKGCMC 1 cut(s) 1254
BstV1I GCAGC 7 cut(s) 75, 101, 644, 1001, 1316, 1319, 1446
BstV2I GAAGAC 2 cut(s) 298, 419
BstX2I RGATCY 1 cut(s) 965
BstXI CCANNNNNNTGG 1 cut(s) 194
BstYI RGATCY 1 cut(s) 965
BsuRI GGCC 5 cut(s) 186, 198, 625, 831, 1265
BtgI CCRYGG 2 cut(s) 54, 1357
BtsCI GGATG 4 cut(s) 467, 778, 959, 1137
BtsIMutI CAGTG 3 cut(s) 1050, 1252, 1433
Cac8I GCNNGC 4 cut(s) 94, 813, 1019, 1082
CaiI CAGNNNCTG 1 cut(s) 857
CfoI GCGC 2 cut(s) 811, 1035
Cfr13I GGNCC 4 cut(s) 333, 645, 905, 994
Cfr9I CCCGGG 1 cut(s) 1305
Csp6I GTAC 1 cut(s) 1212
CviAII CATG 8 cut(s) 188, 235, 583, 816, 1121, 1282, 1371, 1488
CviQI GTAC 1 cut(s) 1212
DpnI GATC 6 cut(s) 475, 487, 492, 820, 967, 1280
DpnII GATC 6 cut(s) 473, 485, 490, 818, 965, 1278
DraIII CACNNNGTG 2 cut(s) 1056, 1460
EaeI YGGCCR 3 cut(s) 196, 623, 829
Eam1104I CTCTTC 3 cut(s) 175, 671, 1381
EarI CTCTTC 3 cut(s) 175, 671, 1381
Eco130I CCWWGG 2 cut(s) 477, 626
Eco147I AGGCCT 1 cut(s) 1265
Eco31I GGTCTC 1 cut(s) 208
Eco47I GGWCC 4 cut(s) 333, 645, 905, 994
Eco57I CTGAAG 2 cut(s) 292, 1405
Eco88I CYCGRG 1 cut(s) 1305
EcoO109I RGGNCCY 1 cut(s) 994
EcoRI GAATTC 1 cut(s) 1040
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 2 cut(s) 477, 626
ErhI CCWWGG 2 cut(s) 477, 626
FaeI CATG 8 cut(s) 191, 238, 586, 819, 1124, 1285, 1374, 1491
FatI CATG 8 cut(s) 187, 234, 582, 815, 1120, 1281, 1370, 1487
Fnu4HI GCNGC 8 cut(s) 64, 90, 658, 832, 1015, 1330, 1333, 1435
FokI GGATG 4 cut(s) 474, 785, 966, 1124
Fsp4HI GCNGC 8 cut(s) 64, 90, 658, 832, 1015, 1330, 1333, 1435
FspBI CTAG 5 cut(s) 595, 613, 864, 1183, 1216
FspI TGCGCA 2 cut(s) 810, 1034
GlaI GCGC 2 cut(s) 810, 1034
GluI GCNGC 8 cut(s) 64, 90, 658, 832, 1015, 1330, 1333, 1435
HaeIII GGCC 5 cut(s) 186, 198, 625, 831, 1265
HapII CCGG 1 cut(s) 1306
HhaI GCGC 2 cut(s) 811, 1035
Hin1II CATG 8 cut(s) 191, 238, 586, 819, 1124, 1285, 1374, 1491
Hin6I GCGC 2 cut(s) 809, 1033
HinP1I GCGC 2 cut(s) 809, 1033
HinfI GANTC 4 cut(s) 132, 600, 1300, 1353
HpaII CCGG 1 cut(s) 1306
HphI GGTGA 3 cut(s) 386, 480, 803
Hpy166II GTNNAC 2 cut(s) 794, 1221
Hpy188I TCNGA 5 cut(s) 311, 341, 434, 490, 530
Hpy188III TCNNGA 3 cut(s) 494, 702, 864
Hpy8I GTNNAC 2 cut(s) 794, 1221
Hpy99I CGWCG 1 cut(s) 608
HpyAV CCTTC 7 cut(s) 306, 371, 429, 541, 699, 734, 743
HpyCH4IV ACGT 1 cut(s) 690
HpyCH4V TGCA 8 cut(s) 354, 1017, 1080, 1114, 1127, 1285, 1320, 1434
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 666, 1066, 1326
HpySE526I ACGT 1 cut(s) 690
Hsp92II CATG 8 cut(s) 191, 238, 586, 819, 1124, 1285, 1374, 1491
HspAI GCGC 2 cut(s) 809, 1033
Kzo9I GATC 6 cut(s) 473, 485, 490, 818, 965, 1278
LmnI GCTCC 2 cut(s) 86, 1011
Lsp1109I GCAGC 7 cut(s) 75, 101, 644, 1001, 1316, 1319, 1446
LweI GCATC 2 cut(s) 857, 1114
MaeI CTAG 5 cut(s) 595, 613, 864, 1183, 1216
MaeII ACGT 1 cut(s) 690
MaeIII GTNAC 2 cut(s) 468, 959
MalI GATC 6 cut(s) 475, 487, 492, 820, 967, 1280
MboI GATC 6 cut(s) 473, 485, 490, 818, 965, 1278
MfeI CAATTG 1 cut(s) 1290
MflI RGATCY 1 cut(s) 965
MhlI GDGCHC 2 cut(s) 1254, 1380
MlsI TGGCCA 2 cut(s) 198, 625
MluNI TGGCCA 2 cut(s) 198, 625
MlyI GAGTC 1 cut(s) 141
Mox20I TGGCCA 2 cut(s) 198, 625
MscI TGGCCA 2 cut(s) 198, 625
MseI TTAA 5 cut(s) 823, 889, 895, 1095, 1419
Msp20I TGGCCA 2 cut(s) 198, 625
MspA1I CMGCKG 4 cut(s) 669, 834, 1146, 1437
MspI CCGG 1 cut(s) 1306
MspR9I CCNGG 3 cut(s) 200, 1306, 1307
MunI CAATTG 1 cut(s) 1290
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 4 cut(s) 72, 666, 1066, 1326
NciI CCSGG 2 cut(s) 1306, 1307
NdeII GATC 6 cut(s) 473, 485, 490, 818, 965, 1278
NlaIII CATG 8 cut(s) 191, 238, 586, 819, 1124, 1285, 1374, 1491
NlaIV GGNNCC 2 cut(s) 610, 907
NmuCI GTSAC 1 cut(s) 468
NsbI TGCGCA 2 cut(s) 810, 1034
PceI AGGCCT 1 cut(s) 1265
PfeI GAWTC 3 cut(s) 600, 1300, 1353
PflMI CCANNNNNTGG 1 cut(s) 1056
PkrI GCNGC 8 cut(s) 65, 91, 659, 833, 1016, 1331, 1334, 1436
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PpuMI RGGWCCY 1 cut(s) 994
Psp5II RGGWCCY 1 cut(s) 994
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 610, 907
PspPI GGNCC 4 cut(s) 333, 645, 905, 994
PspPPI RGGWCCY 1 cut(s) 994
PstI CTGCAG 2 cut(s) 1019, 1322
PstNI CAGNNNCTG 1 cut(s) 857
PsuI RGATCY 1 cut(s) 965
PvuII CAGCTG 3 cut(s) 669, 1146, 1437
RsaI GTAC 1 cut(s) 1213
RsaNI GTAC 1 cut(s) 1212
SaqAI TTAA 5 cut(s) 823, 889, 895, 1095, 1419
SatI GCNGC 8 cut(s) 64, 90, 658, 832, 1015, 1330, 1333, 1435
Sau3AI GATC 6 cut(s) 473, 485, 490, 818, 965, 1278
Sau96I GGNCC 4 cut(s) 333, 645, 905, 994
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 3 cut(s) 200, 1306, 1307
SduI GDGCHC 2 cut(s) 1254, 1380
SfaNI GCATC 2 cut(s) 857, 1114
SfcI CTRYAG 2 cut(s) 1015, 1318
SinI GGWCC 4 cut(s) 333, 645, 905, 994
SmaI CCCGGG 1 cut(s) 1307
SmlI CTYRAG 1 cut(s) 1089
SmoI CTYRAG 1 cut(s) 1089
SseBI AGGCCT 1 cut(s) 1265
SsiI CCGC 2 cut(s) 218, 832
SspI AATATT 1 cut(s) 1313
SspMI CTAG 5 cut(s) 595, 613, 864, 1183, 1216
StuI AGGCCT 1 cut(s) 1265
StyD4I CCNGG 3 cut(s) 198, 1304, 1305
StyI CCWWGG 2 cut(s) 477, 626
TaiI ACGT 1 cut(s) 693
TaqI TCGA 2 cut(s) 545, 842
TauI GCSGC 1 cut(s) 834
TfiI GAWTC 3 cut(s) 600, 1300, 1353
Tru1I TTAA 5 cut(s) 823, 889, 895, 1095, 1419
Tru9I TTAA 5 cut(s) 823, 889, 895, 1095, 1419
TscAI CASTG 3 cut(s) 1057, 1259, 1433
TseFI GTSAC 1 cut(s) 468
TseI GCWGC 7 cut(s) 63, 89, 657, 1014, 1329, 1332, 1434
Tsp45I GTSAC 1 cut(s) 468
TspDTI ATGAA 3 cut(s) 109, 1440, 1476
TspGWI ACGGA 1 cut(s) 1346
TspMI CCCGGG 1 cut(s) 1305
TspRI CASTG 3 cut(s) 1057, 1259, 1433
Van91I CCANNNNNTGG 1 cut(s) 1056
VpaK11BI GGWCC 4 cut(s) 333, 645, 905, 994
XapI RAATTY 4 cut(s) 681, 782, 974, 1040
XbaI TCTAGA 1 cut(s) 863
XcmI CCANNNNNNNNNTGG 2 cut(s) 633, 1235
XmaI CCCGGG 1 cut(s) 1305
XspI CTAG 5 cut(s) 595, 613, 864, 1183, 1216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.