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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G20250 AT2G20250 AT2G20250 |
| fragaria_vesca | FvH4_2g19950 |
| malus_domestica | MD10G1171500.v1.1 MD10G1171600.v1.1 |
| prunus_persica | Prupe.8G209900_v2.0.a1 Prupe.8G209900_v2.0.a1 Prupe.8G209900_v2.0.a1 |
| pyrus_communis | pycom05g16880 pycom10g14790 |
| rosa_chinensis | RchiOBHm_Chr6g0285611 |
| rosa_laevigata | RLG00000012622 |
| rosa_multiflora | Rmu_co8369127.1_g000001 Rmu_sc0001356.1_g000025 Rmu_sc0015474.1_g000001 Rmu_sc0017770.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00182890 |
| rosa_rugosa | Rorug06G0176200 |
| rosa_samantha | Rh6AG287500 Rh6BG288900 Rh6CG290000 Rh6CG290100 Rh6DG282700 Rh6DG282800 |
| rosa_wichuraiana | Rw6G024720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1315 |
| AciI | CCGC | 1 cut(s) | 1188 |
| AclI | AACGTT | 1 cut(s) | 752 |
| AclWI | GGATC | 7 cut(s) | 47, 74, 190, 360, 1563, 1675, 1688 |
| AcoI | YGGCCR | 1 cut(s) | 732 |
| AcsI | RAATTY | 4 cut(s) | 100, 291, 1030, 1624 |
| AfaI | GTAC | 3 cut(s) | 500, 691, 1334 |
| AfeI | AGCGCT | 1 cut(s) | 91 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 62, 329, 411, 645, 691, 1315 |
| AflII | CTTAAG | 1 cut(s) | 782 |
| AjiI | CACGTC | 2 cut(s) | 410, 1450 |
| AjnI | CCWGG | 3 cut(s) | 685, 766, 1576 |
| AluBI | AGCT | 9 cut(s) | 29, 375, 381, 634, 801, 945, 1330, 1471, 1497 |
| AluI | AGCT | 9 cut(s) | 29, 375, 381, 634, 801, 945, 1330, 1471, 1497 |
| Alw21I | GWGCWC | 2 cut(s) | 1292, 1473 |
| Alw26I | GTCTC | 3 cut(s) | 692, 719, 1674 |
| AlwI | GGATC | 7 cut(s) | 47, 74, 190, 360, 1563, 1675, 1688 |
| Ama87I | CYCGRG | 4 cut(s) | 93, 883, 1169, 1421 |
| Aor51HI | AGCGCT | 1 cut(s) | 91 |
| AoxI | GGCC | 2 cut(s) | 174, 732 |
| ApeKI | GCWGC | 2 cut(s) | 889, 1457 |
| ApoI | RAATTY | 4 cut(s) | 100, 291, 1030, 1624 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1004 |
| AspLEI | GCGC | 1 cut(s) | 92 |
| AspS9I | GGNCC | 1 cut(s) | 789 |
| AsuHPI | GGTGA | 3 cut(s) | 139, 527, 1692 |
| AsuII | TTCGAA | 1 cut(s) | 306 |
| AvaI | CYCGRG | 4 cut(s) | 93, 883, 1169, 1421 |
| AvaII | GGWCC | 1 cut(s) | 789 |
| AxyI | CCTNAGG | 1 cut(s) | 963 |
| BamHI | GGATCC | 1 cut(s) | 1680 |
| BanII | GRGCYC | 1 cut(s) | 1473 |
| BbsI | GAAGAC | 1 cut(s) | 1452 |
| Bbv12I | GWGCWC | 2 cut(s) | 1292, 1473 |
| BbvI | GCAGC | 2 cut(s) | 876, 1444 |
| BccI | CCATC | 3 cut(s) | 280, 855, 959 |
| BceAI | ACGGC | 1 cut(s) | 747 |
| BciT130I | CCWGG | 3 cut(s) | 687, 768, 1578 |
| BciVI | GTATCC | 4 cut(s) | 906, 1106, 1257, 1603 |
| BclI | TGATCA | 1 cut(s) | 145 |
| BcoDI | GTCTC | 3 cut(s) | 692, 719, 1674 |
| BfaI | CTAG | 3 cut(s) | 711, 1053, 1550 |
| BfmI | CTRYAG | 2 cut(s) | 376, 890 |
| BfoI | RGCGCY | 1 cut(s) | 93 |
| BfrI | CTTAAG | 1 cut(s) | 782 |
| BfuI | GTATCC | 4 cut(s) | 906, 1106, 1257, 1603 |
| BglII | AGATCT | 2 cut(s) | 470, 527 |
| BisI | GCNGC | 2 cut(s) | 890, 1458 |
| BlsI | GCNGC | 2 cut(s) | 891, 1459 |
| Bme1390I | CCNGG | 3 cut(s) | 687, 768, 1578 |
| Bme18I | GGWCC | 1 cut(s) | 789 |
| BmeT110I | CYCGRG | 4 cut(s) | 93, 883, 1169, 1421 |
| BmgBI | CACGTC | 2 cut(s) | 410, 1450 |
| BmgT120I | GGNCC | 1 cut(s) | 789 |
| BmiI | GGNNCC | 2 cut(s) | 791, 1682 |
| BmrFI | CCNGG | 3 cut(s) | 687, 768, 1578 |
| BmsI | GCATC | 5 cut(s) | 130, 181, 601, 1265, 1620 |
| BoxI | GACNNNNGTC | 2 cut(s) | 412, 819 |
| BpiI | GAAGAC | 1 cut(s) | 1452 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 623, 655 |
| BpmI | CTGGAG | 1 cut(s) | 1457 |
| Bpu10I | CCTNAGC | 1 cut(s) | 630 |
| Bpu14I | TTCGAA | 1 cut(s) | 306 |
| BpuEI | CTTGAG | 1 cut(s) | 1689 |
| Bsa29I | ATCGAT | 1 cut(s) | 185 |
| BsaAI | YACGTR | 1 cut(s) | 1245 |
| BsaBI | GATNNNNATC | 2 cut(s) | 144, 847 |
| BsaJI | CCNNGG | 5 cut(s) | 685, 720, 884, 1283, 1576 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 995, 1025 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 62, 329, 411, 645, 691, 1315 |
| Bse21I | CCTNAGG | 1 cut(s) | 963 |
| Bse8I | GATNNNNATC | 2 cut(s) | 144, 847 |
| BseBI | CCWGG | 3 cut(s) | 687, 768, 1578 |
| BseCI | ATCGAT | 1 cut(s) | 185 |
| BseDI | CCNNGG | 5 cut(s) | 685, 720, 884, 1283, 1576 |
| BseGI | GGATG | 6 cut(s) | 338, 866, 918, 1259, 1304, 1586 |
| BseJI | GATNNNNATC | 2 cut(s) | 144, 847 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 62, 329, 411, 645, 691, 1315 |
| BseMII | CTCAG | 5 cut(s) | 185, 195, 515, 621, 1512 |
| BseRI | GAGGAG | 2 cut(s) | 710, 1116 |
| BseXI | GCAGC | 2 cut(s) | 876, 1444 |
| BsgI | GTGCAG | 1 cut(s) | 357 |
| BshFI | GGCC | 2 cut(s) | 176, 734 |
| BshVI | ATCGAT | 1 cut(s) | 185 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1292, 1473 |
| BsiHKCI | CYCGRG | 4 cut(s) | 93, 883, 1169, 1421 |
| BsiSI | CCGG | 1 cut(s) | 177 |
| BslFI | GGGAC | 4 cut(s) | 141, 667, 775, 1559 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 62, 329, 411, 645, 691, 1315 |
| BsmAI | GTCTC | 3 cut(s) | 692, 719, 1674 |
| BsmBI | CGTCTC | 1 cut(s) | 719 |
| BsmFI | GGGAC | 4 cut(s) | 141, 667, 775, 1559 |
| BsmI | GAATGC | 1 cut(s) | 212 |
| BsnI | GGCC | 2 cut(s) | 176, 734 |
| BsoBI | CYCGRG | 4 cut(s) | 93, 883, 1169, 1421 |
| Bsp119I | TTCGAA | 1 cut(s) | 306 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1292, 1473 |
| Bsp143I | GATC | 9 cut(s) | 52, 79, 145, 182, 365, 470, 527, 1555, 1680 |
| Bsp19I | CCATGG | 1 cut(s) | 1283 |
| BspACI | CCGC | 1 cut(s) | 1188 |
| BspANI | GGCC | 2 cut(s) | 176, 734 |
| BspCNI | CTCAG | 5 cut(s) | 184, 196, 516, 622, 1511 |
| BspDI | ATCGAT | 1 cut(s) | 185 |
| BspHI | TCATGA | 1 cut(s) | 1672 |
| BspLI | GGNNCC | 2 cut(s) | 791, 1682 |
| BspMAI | CTGCAG | 1 cut(s) | 894 |
| BspPI | GGATC | 7 cut(s) | 47, 74, 190, 360, 1563, 1675, 1688 |
| BspT104I | TTCGAA | 1 cut(s) | 306 |
| BspTI | CTTAAG | 1 cut(s) | 782 |
| BssECI | CCNNGG | 5 cut(s) | 685, 720, 884, 1283, 1576 |
| BssMI | GATC | 9 cut(s) | 52, 79, 145, 182, 365, 470, 527, 1555, 1680 |
| BssT1I | CCWWGG | 2 cut(s) | 720, 1283 |
| Bst2UI | CCWGG | 3 cut(s) | 687, 768, 1578 |
| Bst4CI | ACNGT | 3 cut(s) | 505, 821, 990 |
| Bst6I | CTCTTC | 3 cut(s) | 546, 572, 930 |
| BstAFI | CTTAAG | 1 cut(s) | 782 |
| BstBAI | YACGTR | 1 cut(s) | 1245 |
| BstBI | TTCGAA | 1 cut(s) | 306 |
| BstC8I | GCNNGC | 3 cut(s) | 31, 1192, 1399 |
| BstDEI | CTNAG | 7 cut(s) | 171, 204, 524, 630, 963, 1220, 1498 |
| BstDSI | CCRYGG | 1 cut(s) | 1283 |
| BstF5I | GGATG | 6 cut(s) | 338, 866, 918, 1259, 1304, 1586 |
| BstH2I | RGCGCY | 1 cut(s) | 93 |
| BstHHI | GCGC | 1 cut(s) | 92 |
| BstKTI | GATC | 9 cut(s) | 55, 82, 148, 185, 368, 473, 530, 1558, 1683 |
| BstMAI | GTCTC | 3 cut(s) | 692, 719, 1674 |
| BstMBI | GATC | 9 cut(s) | 52, 79, 145, 182, 365, 470, 527, 1555, 1680 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 862 |
| BstNI | CCWGG | 3 cut(s) | 687, 768, 1578 |
| BstNSI | RCATGY | 1 cut(s) | 431 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 412, 819 |
| BstSCI | CCNGG | 3 cut(s) | 685, 766, 1576 |
| BstSFI | CTRYAG | 2 cut(s) | 376, 890 |
| BstV1I | GCAGC | 2 cut(s) | 876, 1444 |
| BstV2I | GAAGAC | 1 cut(s) | 1452 |
| BstX2I | RGATCY | 4 cut(s) | 365, 470, 527, 1680 |
| BstYI | RGATCY | 4 cut(s) | 365, 470, 527, 1680 |
| Bsu15I | ATCGAT | 1 cut(s) | 185 |
| Bsu36I | CCTNAGG | 1 cut(s) | 963 |
| BsuI | GTATCC | 4 cut(s) | 906, 1106, 1257, 1603 |
| BsuRI | GGCC | 2 cut(s) | 176, 734 |
| BsuTUI | ATCGAT | 1 cut(s) | 185 |
| BtgI | CCRYGG | 1 cut(s) | 1283 |
| BtrI | CACGTC | 2 cut(s) | 410, 1450 |
| BtsCI | GGATG | 6 cut(s) | 338, 866, 918, 1259, 1304, 1586 |
| BtsI | GCAGTG | 1 cut(s) | 244 |
| BtsIMutI | CAGTG | 4 cut(s) | 244, 553, 602, 986 |
| Cac8I | GCNNGC | 3 cut(s) | 31, 1192, 1399 |
| CciI | TCATGA | 1 cut(s) | 1672 |
| CfoI | GCGC | 1 cut(s) | 92 |
| Cfr13I | GGNCC | 1 cut(s) | 789 |
| ClaI | ATCGAT | 1 cut(s) | 185 |
| CseI | GACGC | 1 cut(s) | 1626 |
| Csp6I | GTAC | 3 cut(s) | 499, 690, 1333 |
| CviAII | CATG | 8 cut(s) | 428, 612, 650, 794, 1284, 1310, 1412, 1673 |
| CviQI | GTAC | 3 cut(s) | 499, 690, 1333 |
| DdeI | CTNAG | 7 cut(s) | 171, 204, 524, 630, 963, 1220, 1498 |
| DpnI | GATC | 9 cut(s) | 54, 81, 147, 184, 367, 472, 529, 1557, 1682 |
| DpnII | GATC | 9 cut(s) | 52, 79, 145, 182, 365, 470, 527, 1555, 1680 |
| DraI | TTTAAA | 1 cut(s) | 1570 |
| EaeI | YGGCCR | 1 cut(s) | 732 |
| Eam1104I | CTCTTC | 3 cut(s) | 546, 572, 930 |
| EarI | CTCTTC | 3 cut(s) | 546, 572, 930 |
| Ecl136II | GAGCTC | 1 cut(s) | 1471 |
| Eco130I | CCWWGG | 2 cut(s) | 720, 1283 |
| Eco24I | GRGCYC | 1 cut(s) | 1473 |
| Eco32I | GATATC | 1 cut(s) | 849 |
| Eco47I | GGWCC | 1 cut(s) | 789 |
| Eco47III | AGCGCT | 1 cut(s) | 91 |
| Eco53kI | GAGCTC | 1 cut(s) | 1471 |
| Eco81I | CCTNAGG | 1 cut(s) | 963 |
| Eco88I | CYCGRG | 4 cut(s) | 93, 883, 1169, 1421 |
| EcoICRI | GAGCTC | 1 cut(s) | 1471 |
| EcoO109I | RGGNCCY | 1 cut(s) | 789 |
| EcoRII | CCWGG | 3 cut(s) | 685, 766, 1576 |
| EcoRV | GATATC | 1 cut(s) | 849 |
| EcoT14I | CCWWGG | 2 cut(s) | 720, 1283 |
| EcoT22I | ATGCAT | 1 cut(s) | 1258 |
| EcoT38I | GRGCYC | 1 cut(s) | 1473 |
| ErhI | CCWWGG | 2 cut(s) | 720, 1283 |
| Esp3I | CGTCTC | 1 cut(s) | 719 |
| FaeI | CATG | 8 cut(s) | 431, 615, 653, 797, 1287, 1313, 1415, 1676 |
| FaqI | GGGAC | 4 cut(s) | 141, 667, 775, 1559 |
| FatI | CATG | 8 cut(s) | 427, 611, 649, 793, 1283, 1309, 1411, 1672 |
| FauNDI | CATATG | 1 cut(s) | 828 |
| FbaI | TGATCA | 1 cut(s) | 145 |
| Fnu4HI | GCNGC | 2 cut(s) | 890, 1458 |
| FokI | GGATG | 6 cut(s) | 345, 873, 905, 1246, 1291, 1593 |
| FriOI | GRGCYC | 1 cut(s) | 1473 |
| Fsp4HI | GCNGC | 2 cut(s) | 890, 1458 |
| FspBI | CTAG | 3 cut(s) | 711, 1053, 1550 |
| GlaI | GCGC | 1 cut(s) | 91 |
| GluI | GCNGC | 2 cut(s) | 890, 1458 |
| GsuI | CTGGAG | 1 cut(s) | 1457 |
| HaeII | RGCGCY | 1 cut(s) | 93 |
| HaeIII | GGCC | 2 cut(s) | 176, 734 |
| HapII | CCGG | 1 cut(s) | 177 |
| HgaI | GACGC | 1 cut(s) | 1626 |
| HhaI | GCGC | 1 cut(s) | 92 |
| Hin1II | CATG | 8 cut(s) | 431, 615, 653, 797, 1287, 1313, 1415, 1676 |
| Hin6I | GCGC | 1 cut(s) | 90 |
| HinP1I | GCGC | 1 cut(s) | 90 |
| HincII | GTYRAC | 1 cut(s) | 814 |
| HindII | GTYRAC | 1 cut(s) | 814 |
| HpaII | CCGG | 1 cut(s) | 177 |
| HphI | GGTGA | 3 cut(s) | 139, 527, 1692 |
| Hpy166II | GTNNAC | 3 cut(s) | 75, 501, 814 |
| Hpy188III | TCNNGA | 5 cut(s) | 312, 1169, 1423, 1474, 1673 |
| Hpy8I | GTNNAC | 3 cut(s) | 75, 501, 814 |
| Hpy99I | CGWCG | 3 cut(s) | 140, 356, 733 |
| HpyAV | CCTTC | 7 cut(s) | 3, 93, 117, 313, 717, 994, 1161 |
| HpyCH4III | ACNGT | 3 cut(s) | 505, 821, 990 |
| HpyCH4IV | ACGT | 5 cut(s) | 409, 752, 903, 1244, 1449 |
| HpyCH4V | TGCA | 9 cut(s) | 212, 338, 592, 806, 826, 892, 1160, 1256, 1460 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 862 |
| HpyF3I | CTNAG | 7 cut(s) | 171, 204, 524, 630, 963, 1220, 1498 |
| HpySE526I | ACGT | 5 cut(s) | 409, 752, 903, 1244, 1449 |
| Hsp92II | CATG | 8 cut(s) | 431, 615, 653, 797, 1287, 1313, 1415, 1676 |
| HspAI | GCGC | 1 cut(s) | 90 |
| Ksp22I | TGATCA | 1 cut(s) | 145 |
| Kzo9I | GATC | 9 cut(s) | 52, 79, 145, 182, 365, 470, 527, 1555, 1680 |
| LmnI | GCTCC | 2 cut(s) | 1327, 1476 |
| Lsp1109I | GCAGC | 2 cut(s) | 876, 1444 |
| LweI | GCATC | 5 cut(s) | 130, 181, 601, 1265, 1620 |
| MaeI | CTAG | 3 cut(s) | 711, 1053, 1550 |
| MaeII | ACGT | 5 cut(s) | 409, 752, 903, 1244, 1449 |
| MaeIII | GTNAC | 6 cut(s) | 242, 423, 515, 1318, 1583, 1698 |
| MalI | GATC | 9 cut(s) | 54, 81, 147, 184, 367, 472, 529, 1557, 1682 |
| MboI | GATC | 9 cut(s) | 52, 79, 145, 182, 365, 470, 527, 1555, 1680 |
| MflI | RGATCY | 4 cut(s) | 365, 470, 527, 1680 |
| MhlI | GDGCHC | 2 cut(s) | 1292, 1473 |
| MluCI | AATT | 7 cut(s) | 100, 235, 291, 1030, 1107, 1618, 1624 |
| MlyI | GAGTC | 4 cut(s) | 163, 433, 747, 1230 |
| MmeI | TCCRAC | 1 cut(s) | 1611 |
| Mph1103I | ATGCAT | 1 cut(s) | 1258 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1004 |
| MseI | TTAA | 6 cut(s) | 219, 227, 783, 1508, 1569, 1665 |
| MspCI | CTTAAG | 1 cut(s) | 782 |
| MspI | CCGG | 1 cut(s) | 177 |
| MspR9I | CCNGG | 3 cut(s) | 687, 768, 1578 |
| Mva1269I | GAATGC | 1 cut(s) | 212 |
| MvaI | CCWGG | 3 cut(s) | 687, 768, 1578 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 862 |
| NcoI | CCATGG | 1 cut(s) | 1283 |
| NdeI | CATATG | 1 cut(s) | 828 |
| NdeII | GATC | 9 cut(s) | 52, 79, 145, 182, 365, 470, 527, 1555, 1680 |
| NlaIII | CATG | 8 cut(s) | 431, 615, 653, 797, 1287, 1313, 1415, 1676 |
| NlaIV | GGNNCC | 2 cut(s) | 791, 1682 |
| NmeAIII | GCCGAG | 1 cut(s) | 655 |
| NmuCI | GTSAC | 4 cut(s) | 242, 515, 1583, 1698 |
| NsiI | ATGCAT | 1 cut(s) | 1258 |
| NspI | RCATGY | 1 cut(s) | 431 |
| NspV | TTCGAA | 1 cut(s) | 306 |
| PaeR7I | CTCGAG | 3 cut(s) | 93, 1169, 1421 |
| PagI | TCATGA | 1 cut(s) | 1672 |
| PctI | GAATGC | 1 cut(s) | 212 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1004 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1315 |
| PkrI | GCNGC | 2 cut(s) | 891, 1459 |
| PleI | GAGTC | 4 cut(s) | 162, 433, 746, 1230 |
| PpsI | GAGTC | 4 cut(s) | 162, 433, 746, 1230 |
| Ppu21I | YACGTR | 1 cut(s) | 1245 |
| PpuMI | RGGWCCY | 1 cut(s) | 789 |
| PshAI | GACNNNNGTC | 2 cut(s) | 412, 819 |
| Psp124BI | GAGCTC | 1 cut(s) | 1473 |
| Psp1406I | AACGTT | 1 cut(s) | 752 |
| Psp5II | RGGWCCY | 1 cut(s) | 789 |
| Psp6I | CCWGG | 3 cut(s) | 685, 766, 1576 |
| PspGI | CCWGG | 3 cut(s) | 685, 766, 1576 |
| PspN4I | GGNNCC | 2 cut(s) | 791, 1682 |
| PspPI | GGNCC | 1 cut(s) | 789 |
| PspPPI | RGGWCCY | 1 cut(s) | 789 |
| PspXI | VCTCGAGB | 1 cut(s) | 93 |
| PstI | CTGCAG | 1 cut(s) | 894 |
| PsuI | RGATCY | 4 cut(s) | 365, 470, 527, 1680 |
| RsaI | GTAC | 3 cut(s) | 500, 691, 1334 |
| RsaNI | GTAC | 3 cut(s) | 499, 690, 1333 |
| SacI | GAGCTC | 1 cut(s) | 1473 |
| SaqAI | TTAA | 6 cut(s) | 219, 227, 783, 1508, 1569, 1665 |
| SatI | GCNGC | 2 cut(s) | 890, 1458 |
| Sau3AI | GATC | 9 cut(s) | 52, 79, 145, 182, 365, 470, 527, 1555, 1680 |
| Sau96I | GGNCC | 1 cut(s) | 789 |
| SchI | GAGTC | 4 cut(s) | 163, 433, 747, 1230 |
| ScrFI | CCNGG | 3 cut(s) | 687, 768, 1578 |
| SduI | GDGCHC | 2 cut(s) | 1292, 1473 |
| SfaNI | GCATC | 5 cut(s) | 130, 181, 601, 1265, 1620 |
| SfcI | CTRYAG | 2 cut(s) | 376, 890 |
| Sfr274I | CTCGAG | 3 cut(s) | 93, 1169, 1421 |
| SfuI | TTCGAA | 1 cut(s) | 306 |
| SinI | GGWCC | 1 cut(s) | 789 |
| SlaI | CTCGAG | 3 cut(s) | 93, 1169, 1421 |
| SmlI | CTYRAG | 5 cut(s) | 93, 782, 1169, 1421, 1704 |
| SmoI | CTYRAG | 5 cut(s) | 93, 782, 1169, 1421, 1704 |
| Sse9I | AATT | 7 cut(s) | 100, 235, 291, 1030, 1107, 1618, 1624 |
| SsiI | CCGC | 1 cut(s) | 1188 |
| SspMI | CTAG | 3 cut(s) | 711, 1053, 1550 |
| SstI | GAGCTC | 1 cut(s) | 1473 |
| StyD4I | CCNGG | 3 cut(s) | 685, 766, 1576 |
| StyI | CCWWGG | 2 cut(s) | 720, 1283 |
| TaaI | ACNGT | 3 cut(s) | 505, 821, 990 |
| TaiI | ACGT | 5 cut(s) | 412, 755, 906, 1247, 1452 |
| TaqI | TCGA | 8 cut(s) | 86, 94, 135, 185, 306, 979, 1170, 1422 |
| TaqII | GACCGA | 1 cut(s) | 65 |
| TasI | AATT | 7 cut(s) | 100, 235, 291, 1030, 1107, 1618, 1624 |
| Tru1I | TTAA | 6 cut(s) | 219, 227, 783, 1508, 1569, 1665 |
| Tru9I | TTAA | 6 cut(s) | 219, 227, 783, 1508, 1569, 1665 |
| TscAI | CASTG | 4 cut(s) | 251, 553, 602, 993 |
| TseFI | GTSAC | 4 cut(s) | 242, 515, 1583, 1698 |
| TseI | GCWGC | 2 cut(s) | 889, 1457 |
| Tsp45I | GTSAC | 4 cut(s) | 242, 515, 1583, 1698 |
| TspDTI | ATGAA | 9 cut(s) | 386, 468, 810, 907, 1143, 1293, 1431, 1472, 1710 |
| TspGWI | ACGGA | 2 cut(s) | 359, 707 |
| TspRI | CASTG | 4 cut(s) | 251, 553, 602, 993 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1315 |
| Vha464I | CTTAAG | 1 cut(s) | 782 |
| VpaK11BI | GGWCC | 1 cut(s) | 789 |
| XapI | RAATTY | 4 cut(s) | 100, 291, 1030, 1624 |
| XceI | RCATGY | 1 cut(s) | 431 |
| XhoI | CTCGAG | 3 cut(s) | 93, 1169, 1421 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1004 |
| XspI | CTAG | 3 cut(s) | 711, 1053, 1550 |
| Zsp2I | ATGCAT | 1 cut(s) | 1258 |