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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G20250 AT2G20250 AT2G20250 |
| fragaria_vesca | FvH4_2g19950 |
| malus_domestica | MD10G1171500.v1.1 MD10G1171600.v1.1 |
| prunus_persica | Prupe.8G209900_v2.0.a1 Prupe.8G209900_v2.0.a1 Prupe.8G209900_v2.0.a1 |
| pyrus_communis | pycom05g16880 pycom10g14790 |
| rosa_chinensis | RchiOBHm_Chr6g0285611 |
| rosa_laevigata | RLG00000012622 |
| rosa_multiflora | Rmu_co8369127.1_g000001 Rmu_sc0001356.1_g000025 Rmu_sc0015474.1_g000001 Rmu_sc0017770.1_g000010 |
| rosa_roxburghii | Rroxscaffold_7G00182890 |
| rosa_rugosa | Rorug06G0176200 |
| rosa_samantha | Rh6AG287500 Rh6BG288900 Rh6CG290000 Rh6CG290100 Rh6DG282700 Rh6DG282800 |
| rosa_wichuraiana | Rw6G024720 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 420 |
| AccB1I | GGYRCC | 2 cut(s) | 814, 883 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 998 |
| AccII | CGCG | 2 cut(s) | 476, 1654 |
| AciI | CCGC | 2 cut(s) | 183, 1654 |
| AclI | AACGTT | 3 cut(s) | 533, 654, 2162 |
| AclWI | GGATC | 5 cut(s) | 2, 514, 754, 912, 2277 |
| AcsI | RAATTY | 4 cut(s) | 156, 200, 1409, 1453 |
| AcyI | GRCGYC | 1 cut(s) | 417 |
| AdeI | CACNNNGTG | 1 cut(s) | 1032 |
| AfaI | GTAC | 5 cut(s) | 344, 1300, 1534, 1765, 1969 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 58, 926, 998, 1211, 1445, 1679 |
| AgsI | TTSAA | 9 cut(s) | 292, 360, 592, 623, 868, 878, 2036, 2249, 2561 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 421 |
| AhlI | ACTAGT | 1 cut(s) | 995 |
| AjnI | CCWGG | 2 cut(s) | 481, 2120 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1167, 1199 |
| Alw21I | GWGCWC | 4 cut(s) | 51, 435, 1202, 2079 |
| Alw26I | GTCTC | 3 cut(s) | 620, 664, 2455 |
| Alw44I | GTGCAC | 1 cut(s) | 1198 |
| AlwI | GGATC | 5 cut(s) | 2, 514, 754, 912, 2277 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1280 |
| Ama87I | CYCGRG | 3 cut(s) | 525, 2263, 2456 |
| AoxI | GGCC | 1 cut(s) | 2359 |
| ApaLI | GTGCAC | 1 cut(s) | 1198 |
| ApeKI | GCWGC | 1 cut(s) | 1931 |
| ApoI | RAATTY | 4 cut(s) | 156, 200, 1409, 1453 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 908, 940, 2397, 2429 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 355 |
| AspA2I | CCTAGG | 1 cut(s) | 1522 |
| AspLEI | GCGC | 3 cut(s) | 478, 1654, 1904 |
| AspS9I | GGNCC | 2 cut(s) | 423, 726 |
| AsuC2I | CCSGG | 1 cut(s) | 59 |
| AsuHPI | GGTGA | 6 cut(s) | 13, 941, 1138, 2057, 2364, 2555 |
| AvaI | CYCGRG | 3 cut(s) | 525, 2263, 2456 |
| AvaII | GGWCC | 2 cut(s) | 423, 726 |
| AvrII | CCTAGG | 1 cut(s) | 1522 |
| BaeGI | GKGCMC | 1 cut(s) | 1202 |
| BanI | GGYRCC | 2 cut(s) | 814, 883 |
| BanII | GRGCYC | 2 cut(s) | 51, 2079 |
| BauI | CACGAG | 1 cut(s) | 766 |
| BbsI | GAAGAC | 1 cut(s) | 266 |
| Bbv12I | GWGCWC | 4 cut(s) | 51, 435, 1202, 2079 |
| BbvI | GCAGC | 1 cut(s) | 1918 |
| BccI | CCATC | 6 cut(s) | 75, 716, 850, 1023, 2504, 2534 |
| BceAI | ACGGC | 1 cut(s) | 1180 |
| BciT130I | CCWGG | 2 cut(s) | 483, 2122 |
| BcnI | CCSGG | 1 cut(s) | 59 |
| BcoDI | GTCTC | 3 cut(s) | 620, 664, 2455 |
| BcuI | ACTAGT | 1 cut(s) | 995 |
| BfmI | CTRYAG | 2 cut(s) | 88, 1932 |
| BglII | AGATCT | 1 cut(s) | 613 |
| BisI | GCNGC | 2 cut(s) | 184, 1932 |
| BlnI | CCTAGG | 1 cut(s) | 1522 |
| BlpI | GCTNAGC | 1 cut(s) | 2472 |
| BlsI | GCNGC | 2 cut(s) | 185, 1933 |
| Bme1390I | CCNGG | 3 cut(s) | 59, 483, 2122 |
| Bme18I | GGWCC | 2 cut(s) | 423, 726 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 421 |
| BmeT110I | CYCGRG | 3 cut(s) | 525, 2263, 2456 |
| BmgT120I | GGNCC | 2 cut(s) | 423, 726 |
| BmiI | GGNNCC | 7 cut(s) | 63, 727, 816, 885, 1038, 1365, 2260 |
| BmrFI | CCNGG | 3 cut(s) | 59, 483, 2122 |
| BmrI | ACTGGG | 1 cut(s) | 1766 |
| BmsI | GCATC | 6 cut(s) | 289, 500, 922, 1841, 1899, 2227 |
| BmuI | ACTGGG | 1 cut(s) | 1766 |
| BoxI | GACNNNNGTC | 1 cut(s) | 194 |
| BpiI | GAAGAC | 1 cut(s) | 266 |
| BpmI | CTGGAG | 2 cut(s) | 213, 2429 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2472 |
| BpuMI | CCSGG | 1 cut(s) | 59 |
| BsaHI | GRCGYC | 1 cut(s) | 417 |
| BsaJI | CCNNGG | 6 cut(s) | 346, 426, 1522, 2121, 2262, 2478 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 58, 926, 998, 1211, 1445, 1679 |
| Bse1I | ACTGG | 6 cut(s) | 196, 372, 729, 1761, 1808, 1998 |
| BseBI | CCWGG | 2 cut(s) | 483, 2122 |
| BseDI | CCNNGG | 6 cut(s) | 346, 426, 1522, 2121, 2262, 2478 |
| BseGI | GGATG | 6 cut(s) | 842, 1393, 1627, 1861, 2218, 2515 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 58, 926, 998, 1211, 1445, 1679 |
| BseMII | CTCAG | 5 cut(s) | 136, 318, 516, 763, 2486 |
| BseNI | ACTGG | 6 cut(s) | 196, 372, 729, 1761, 1808, 1998 |
| BseRI | GAGGAG | 1 cut(s) | 737 |
| BseSI | GKGCMC | 1 cut(s) | 1202 |
| BseXI | GCAGC | 1 cut(s) | 1918 |
| BseYI | CCCAGC | 4 cut(s) | 1210, 1444, 2325, 2505 |
| Bsh1236I | CGCG | 2 cut(s) | 476, 1654 |
| BshFI | GGCC | 1 cut(s) | 2361 |
| BshNI | GGYRCC | 2 cut(s) | 814, 883 |
| BsiHKAI | GWGCWC | 4 cut(s) | 51, 435, 1202, 2079 |
| BsiHKCI | CYCGRG | 3 cut(s) | 525, 2263, 2456 |
| BsiSI | CCGG | 1 cut(s) | 59 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 58, 926, 998, 1211, 1445, 1679 |
| BsmAI | GTCTC | 3 cut(s) | 620, 664, 2455 |
| BsmI | GAATGC | 1 cut(s) | 275 |
| BsnI | GGCC | 1 cut(s) | 2361 |
| BsoBI | CYCGRG | 3 cut(s) | 525, 2263, 2456 |
| Bsp1286I | GDGCHC | 4 cut(s) | 51, 435, 1202, 2079 |
| Bsp143I | GATC | 8 cut(s) | 7, 118, 506, 613, 759, 904, 959, 2269 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2472 |
| BspACI | CCGC | 2 cut(s) | 183, 1654 |
| BspANI | GGCC | 1 cut(s) | 2361 |
| BspCNI | CTCAG | 5 cut(s) | 135, 319, 515, 762, 2485 |
| BspFNI | CGCG | 2 cut(s) | 476, 1654 |
| BspLI | GGNNCC | 7 cut(s) | 63, 727, 816, 885, 1038, 1365, 2260 |
| BspMAI | CTGCAG | 1 cut(s) | 1936 |
| BspPI | GGATC | 5 cut(s) | 2, 514, 754, 912, 2277 |
| BspQI | GCTCTTC | 1 cut(s) | 1419 |
| BspT107I | GGYRCC | 2 cut(s) | 814, 883 |
| BsrI | ACTGG | 6 cut(s) | 196, 372, 729, 1761, 1808, 1998 |
| BssECI | CCNNGG | 6 cut(s) | 346, 426, 1522, 2121, 2262, 2478 |
| BssMI | GATC | 8 cut(s) | 7, 118, 506, 613, 759, 904, 959, 2269 |
| BssNI | GRCGYC | 1 cut(s) | 417 |
| BssSI | CACGAG | 1 cut(s) | 766 |
| BssT1I | CCWWGG | 2 cut(s) | 1522, 2478 |
| Bst2BI | CACGAG | 1 cut(s) | 766 |
| Bst2UI | CCWGG | 2 cut(s) | 483, 2122 |
| Bst4CI | ACNGT | 3 cut(s) | 25, 1030, 2028 |
| Bst6I | CTCTTC | 5 cut(s) | 618, 662, 1183, 1419, 1885 |
| BstACI | GRCGYC | 1 cut(s) | 417 |
| BstC8I | GCNNGC | 4 cut(s) | 304, 644, 648, 1990 |
| BstDEI | CTNAG | 5 cut(s) | 122, 327, 502, 749, 2472 |
| BstF5I | GGATG | 6 cut(s) | 842, 1393, 1627, 1861, 2218, 2515 |
| BstFNI | CGCG | 2 cut(s) | 476, 1654 |
| BstHHI | GCGC | 3 cut(s) | 478, 1654, 1904 |
| BstKTI | GATC | 8 cut(s) | 10, 121, 509, 616, 762, 907, 962, 2272 |
| BstMAI | GTCTC | 3 cut(s) | 620, 664, 2455 |
| BstMBI | GATC | 8 cut(s) | 7, 118, 506, 613, 759, 904, 959, 2269 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 225, 1660, 1994 |
| BstNI | CCWGG | 2 cut(s) | 483, 2122 |
| BstNSI | RCATGY | 2 cut(s) | 650, 1992 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 194 |
| BstSCI | CCNGG | 3 cut(s) | 57, 481, 2120 |
| BstSFI | CTRYAG | 2 cut(s) | 88, 1932 |
| BstSLI | GKGCMC | 1 cut(s) | 1202 |
| BstUI | CGCG | 2 cut(s) | 476, 1654 |
| BstV1I | GCAGC | 1 cut(s) | 1918 |
| BstV2I | GAAGAC | 1 cut(s) | 266 |
| BstX2I | RGATCY | 3 cut(s) | 7, 613, 904 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1852 |
| BstYI | RGATCY | 3 cut(s) | 7, 613, 904 |
| BsuRI | GGCC | 1 cut(s) | 2361 |
| BtgZI | GCGATG | 2 cut(s) | 18, 2355 |
| BtsCI | GGATG | 6 cut(s) | 842, 1393, 1627, 1861, 2218, 2515 |
| BtsIMutI | CAGTG | 2 cut(s) | 1035, 2033 |
| Cac8I | GCNNGC | 4 cut(s) | 304, 644, 648, 1990 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1280 |
| CfoI | GCGC | 3 cut(s) | 478, 1654, 1904 |
| Cfr13I | GGNCC | 2 cut(s) | 423, 726 |
| CseI | GACGC | 1 cut(s) | 1937 |
| CsiI | ACCWGGT | 1 cut(s) | 481 |
| Csp6I | GTAC | 5 cut(s) | 343, 1299, 1533, 1764, 1968 |
| CviQI | GTAC | 5 cut(s) | 343, 1299, 1533, 1764, 1968 |
| DdeI | CTNAG | 5 cut(s) | 122, 327, 502, 749, 2472 |
| DpnI | GATC | 8 cut(s) | 9, 120, 508, 615, 761, 906, 961, 2271 |
| DpnII | GATC | 8 cut(s) | 7, 118, 506, 613, 759, 904, 959, 2269 |
| DraIII | CACNNNGTG | 1 cut(s) | 1032 |
| DriI | GACNNNNNGTC | 1 cut(s) | 421 |
| Eam1104I | CTCTTC | 5 cut(s) | 618, 662, 1183, 1419, 1885 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 421 |
| EarI | CTCTTC | 5 cut(s) | 618, 662, 1183, 1419, 1885 |
| Ecl136II | GAGCTC | 2 cut(s) | 49, 2077 |
| Eco130I | CCWWGG | 2 cut(s) | 1522, 2478 |
| Eco147I | AGGCCT | 1 cut(s) | 2361 |
| Eco24I | GRGCYC | 2 cut(s) | 51, 2079 |
| Eco32I | GATATC | 2 cut(s) | 178, 2451 |
| Eco47I | GGWCC | 2 cut(s) | 423, 726 |
| Eco53kI | GAGCTC | 2 cut(s) | 49, 2077 |
| Eco88I | CYCGRG | 3 cut(s) | 525, 2263, 2456 |
| EcoICRI | GAGCTC | 2 cut(s) | 49, 2077 |
| EcoO109I | RGGNCCY | 1 cut(s) | 423 |
| EcoRII | CCWGG | 2 cut(s) | 481, 2120 |
| EcoRV | GATATC | 2 cut(s) | 178, 2451 |
| EcoT14I | CCWWGG | 2 cut(s) | 1522, 2478 |
| EcoT22I | ATGCAT | 2 cut(s) | 277, 2099 |
| EcoT38I | GRGCYC | 2 cut(s) | 51, 2079 |
| ErhI | CCWWGG | 2 cut(s) | 1522, 2478 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1054, 1086, 1882, 1914 |
| Fnu4HI | GCNGC | 2 cut(s) | 184, 1932 |
| FokI | GGATG | 6 cut(s) | 829, 1400, 1634, 1868, 2205, 2522 |
| FriOI | GRGCYC | 2 cut(s) | 51, 2079 |
| Fsp4HI | GCNGC | 2 cut(s) | 184, 1932 |
| GlaI | GCGC | 3 cut(s) | 477, 1653, 1903 |
| GluI | GCNGC | 2 cut(s) | 184, 1932 |
| GsaI | CCCAGC | 4 cut(s) | 1214, 1448, 2329, 2509 |
| GsuI | CTGGAG | 2 cut(s) | 213, 2429 |
| HaeIII | GGCC | 1 cut(s) | 2361 |
| HapII | CCGG | 1 cut(s) | 59 |
| HgaI | GACGC | 1 cut(s) | 1937 |
| HhaI | GCGC | 3 cut(s) | 478, 1654, 1904 |
| Hin1I | GRCGYC | 1 cut(s) | 417 |
| Hin6I | GCGC | 3 cut(s) | 476, 1652, 1902 |
| HinP1I | GCGC | 3 cut(s) | 476, 1652, 1902 |
| HincII | GTYRAC | 2 cut(s) | 823, 2416 |
| HindII | GTYRAC | 2 cut(s) | 823, 2416 |
| HindIII | AAGCTT | 1 cut(s) | 895 |
| HpaII | CCGG | 1 cut(s) | 59 |
| HphI | GGTGA | 6 cut(s) | 13, 941, 1138, 2057, 2364, 2555 |
| Hpy166II | GTNNAC | 4 cut(s) | 823, 1200, 2416, 2422 |
| Hpy8I | GTNNAC | 4 cut(s) | 823, 1200, 2416, 2422 |
| Hpy99I | CGWCG | 3 cut(s) | 46, 416, 419 |
| HpyAV | CCTTC | 5 cut(s) | 28, 286, 2030, 2144, 2255 |
| HpyCH4III | ACNGT | 3 cut(s) | 25, 1030, 2028 |
| HpyCH4IV | ACGT | 6 cut(s) | 417, 533, 654, 1966, 2162, 2418 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 225, 1660, 1994 |
| HpyF3I | CTNAG | 5 cut(s) | 122, 327, 502, 749, 2472 |
| HpySE526I | ACGT | 6 cut(s) | 417, 533, 654, 1966, 2162, 2418 |
| Hsp92I | GRCGYC | 1 cut(s) | 417 |
| HspAI | GCGC | 3 cut(s) | 476, 1652, 1902 |
| Kzo9I | GATC | 8 cut(s) | 7, 118, 506, 613, 759, 904, 959, 2269 |
| LguI | GCTCTTC | 1 cut(s) | 1419 |
| LmnI | GCTCC | 7 cut(s) | 46, 54, 105, 131, 538, 986, 2082 |
| Lsp1109I | GCAGC | 1 cut(s) | 1918 |
| LweI | GCATC | 6 cut(s) | 289, 500, 922, 1841, 1899, 2227 |
| MabI | ACCWGGT | 1 cut(s) | 481 |
| MaeII | ACGT | 6 cut(s) | 417, 533, 654, 1966, 2162, 2418 |
| MaeIII | GTNAC | 3 cut(s) | 445, 914, 1126 |
| MalI | GATC | 8 cut(s) | 9, 120, 508, 615, 761, 906, 961, 2271 |
| MboI | GATC | 8 cut(s) | 7, 118, 506, 613, 759, 904, 959, 2269 |
| MfeI | CAATTG | 2 cut(s) | 878, 2561 |
| MflI | RGATCY | 3 cut(s) | 7, 613, 904 |
| MhlI | GDGCHC | 4 cut(s) | 51, 435, 1202, 2079 |
| MmeI | TCCRAC | 7 cut(s) | 24, 516, 1016, 1131, 1165, 1430, 1867 |
| Mph1103I | ATGCAT | 2 cut(s) | 277, 2099 |
| MroXI | GAANNNNTTC | 1 cut(s) | 355 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1205, 1987, 2010, 2016 |
| MspA1I | CMGCKG | 2 cut(s) | 183, 1973 |
| MspI | CCGG | 1 cut(s) | 59 |
| MspR9I | CCNGG | 3 cut(s) | 59, 483, 2122 |
| MunI | CAATTG | 2 cut(s) | 878, 2561 |
| Mva1269I | GAATGC | 1 cut(s) | 275 |
| MvaI | CCWGG | 2 cut(s) | 483, 2122 |
| MvnI | CGCG | 2 cut(s) | 476, 1654 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 225, 1660, 1994 |
| NciI | CCSGG | 1 cut(s) | 59 |
| NdeII | GATC | 8 cut(s) | 7, 118, 506, 613, 759, 904, 959, 2269 |
| NlaIV | GGNNCC | 7 cut(s) | 63, 727, 816, 885, 1038, 1365, 2260 |
| NmeAIII | GCCGAG | 1 cut(s) | 390 |
| NmuCI | GTSAC | 3 cut(s) | 445, 914, 1126 |
| NsiI | ATGCAT | 2 cut(s) | 277, 2099 |
| NspI | RCATGY | 2 cut(s) | 650, 1992 |
| PaeI | GCATGC | 2 cut(s) | 650, 1992 |
| PaeR7I | CTCGAG | 2 cut(s) | 525, 2456 |
| PceI | AGGCCT | 1 cut(s) | 2361 |
| PciSI | GCTCTTC | 1 cut(s) | 1419 |
| PctI | GAATGC | 1 cut(s) | 275 |
| PdmI | GAANNNNTTC | 1 cut(s) | 355 |
| PfeI | GAWTC | 9 cut(s) | 54, 208, 245, 793, 1088, 1322, 1556, 1796, 2237 |
| PflFI | GACNNNGTC | 2 cut(s) | 416, 2028 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 998 |
| PkrI | GCNGC | 2 cut(s) | 185, 1933 |
| PpuMI | RGGWCCY | 1 cut(s) | 423 |
| PshAI | GACNNNNGTC | 1 cut(s) | 194 |
| Psp124BI | GAGCTC | 2 cut(s) | 51, 2079 |
| Psp1406I | AACGTT | 3 cut(s) | 533, 654, 2162 |
| Psp5II | RGGWCCY | 1 cut(s) | 423 |
| Psp6I | CCWGG | 2 cut(s) | 481, 2120 |
| PspFI | CCCAGC | 4 cut(s) | 1210, 1444, 2325, 2505 |
| PspGI | CCWGG | 2 cut(s) | 481, 2120 |
| PspN4I | GGNNCC | 7 cut(s) | 63, 727, 816, 885, 1038, 1365, 2260 |
| PspPI | GGNCC | 2 cut(s) | 423, 726 |
| PspPPI | RGGWCCY | 1 cut(s) | 423 |
| PspXI | VCTCGAGB | 1 cut(s) | 525 |
| PstI | CTGCAG | 1 cut(s) | 1936 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1280 |
| PsuI | RGATCY | 3 cut(s) | 7, 613, 904 |
| PsyI | GACNNNGTC | 2 cut(s) | 416, 2028 |
| PvuII | CAGCTG | 1 cut(s) | 1973 |
| RsaI | GTAC | 5 cut(s) | 344, 1300, 1534, 1765, 1969 |
| RsaNI | GTAC | 5 cut(s) | 343, 1299, 1533, 1764, 1968 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1205, 1987, 2010, 2016 |
| SacI | GAGCTC | 2 cut(s) | 51, 2079 |
| SapI | GCTCTTC | 1 cut(s) | 1419 |
| SatI | GCNGC | 2 cut(s) | 184, 1932 |
| Sau3AI | GATC | 8 cut(s) | 7, 118, 506, 613, 759, 904, 959, 2269 |
| Sau96I | GGNCC | 2 cut(s) | 423, 726 |
| ScrFI | CCNGG | 3 cut(s) | 59, 483, 2122 |
| SduI | GDGCHC | 4 cut(s) | 51, 435, 1202, 2079 |
| SexAI | ACCWGGT | 1 cut(s) | 481 |
| SfaNI | GCATC | 6 cut(s) | 289, 500, 922, 1841, 1899, 2227 |
| SfcI | CTRYAG | 2 cut(s) | 88, 1932 |
| Sfr274I | CTCGAG | 2 cut(s) | 525, 2456 |
| SinI | GGWCC | 2 cut(s) | 423, 726 |
| SlaI | CTCGAG | 2 cut(s) | 525, 2456 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1205, 1987, 2010, 2016 |
| SmlI | CTYRAG | 2 cut(s) | 525, 2456 |
| SmoI | CTYRAG | 2 cut(s) | 525, 2456 |
| SpeI | ACTAGT | 1 cut(s) | 995 |
| SphI | GCATGC | 2 cut(s) | 650, 1992 |
| SseBI | AGGCCT | 1 cut(s) | 2361 |
| SsiI | CCGC | 2 cut(s) | 183, 1654 |
| SspI | AATATT | 1 cut(s) | 1880 |
| SstI | GAGCTC | 2 cut(s) | 51, 2079 |
| StuI | AGGCCT | 1 cut(s) | 2361 |
| StyD4I | CCNGG | 3 cut(s) | 57, 481, 2120 |
| StyI | CCWWGG | 2 cut(s) | 1522, 2478 |
| TaaI | ACNGT | 3 cut(s) | 25, 1030, 2028 |
| TaiI | ACGT | 6 cut(s) | 420, 536, 657, 1969, 2165, 2421 |
| TaqI | TCGA | 4 cut(s) | 494, 526, 2116, 2457 |
| TatI | WGTACW | 1 cut(s) | 1532 |
| TauI | GCSGC | 1 cut(s) | 186 |
| TfiI | GAWTC | 9 cut(s) | 54, 208, 245, 793, 1088, 1322, 1556, 1796, 2237 |
| TscAI | CASTG | 2 cut(s) | 1035, 2033 |
| TseFI | GTSAC | 3 cut(s) | 445, 914, 1126 |
| TseI | GCWGC | 1 cut(s) | 1931 |
| Tsp45I | GTSAC | 3 cut(s) | 445, 914, 1126 |
| TspGWI | ACGGA | 1 cut(s) | 694 |
| TspRI | CASTG | 2 cut(s) | 1035, 2033 |
| Tth111I | GACNNNGTC | 2 cut(s) | 416, 2028 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 998 |
| VneI | GTGCAC | 1 cut(s) | 1198 |
| VpaK11BI | GGWCC | 2 cut(s) | 423, 726 |
| XapI | RAATTY | 4 cut(s) | 156, 200, 1409, 1453 |
| XceI | RCATGY | 2 cut(s) | 650, 1992 |
| XhoI | CTCGAG | 2 cut(s) | 525, 2456 |
| XmaJI | CCTAGG | 1 cut(s) | 1522 |
| XmnI | GAANNNNTTC | 1 cut(s) | 355 |
| ZraI | GACGTC | 1 cut(s) | 418 |
| Zsp2I | ATGCAT | 2 cut(s) | 277, 2099 |