Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006703

Physical Location & Seq

Genomic Coordinates Reverse (-)

47693841 .. 47695604

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG282700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGAAAGTGGTGCCCGTTGACGAGTCTATGCCACTTCCATCCTTTGAGTCAGATATTCATTTCAAGGAACTTCAATTGGCACCTACTAAAAGATTTATGGATCTTGGTTGTGACCCTTATTTCGGTGATGCGACATTATCTTGTAGGACAAAGAGATCAAGAAATATGGTTTCCTGCTCCTATTCTCCAACTAGTGATGCTTACAAGAACCATCTTGATTACACAGTGTGGGAACCTAACTCTGAATTACTAGGAGGAAGTGCAATTTTATGTCCGAATAGTGATTCATATTCTATTCTCCCATTCAAAGAATATGGATTGGTGACATCTGGCTATGTCAAAGAGTCGGATATATTCTATCAGCCACCTGAATATATGGTTGGAAGAGAGCCATGCACTCCTATGCTGGGTTGGGATTTTGATAGGATAGATGAAGAAAGAAAATTATTTAACTTGTCAAGAGACAGAGCAGACTCTGAACTACTAGGAAGTAGTACAATGTCATGTCCTATGATTGATTCAGATTATGTTCTTCCATTCAGGGAATATGGATTGAGGGAACCTAGCCATGTTAAAGAGCTGGATGTATTCTGTCAGCCAAATGAATTTATGGTTCGGGAAGAGCTAGGTGCTCCTATGCTGGGTTGGGATTTTGATAGCACAGATGAAGAAAGAAAATTATCTAACTTGTCAAGATACAGAGTGGAGTCTAAACTACTAGGTAGTAGTCCAATGTCATGTCCTATGATTGATTCAGATTATGTTCTTCCTTTCAGGGAATATGGATTGAGGGAAACTAGCCATGTTAAAGAGCTGGATGTATTCTGTCAGCCGAATGAATATATGGTGCGGAAAGACCTATGTGTTCCTATGCTGGGTCGGGATTTTGATAGCACAGATGAAGAAAGAAACTTATCTAGCTTATCAAGATATAGAGCTGACTCTGAATTACTGGGAGGTACTGCAATTTCATGCTCTATGAGTGATGTAGATTCTGTGCTTCCATTTAAAGAATATGGATTGAGGGCATCTAGCCATGCCGAAGAGCTGGATGTTTTCTATAAGCCAAACAAATATTTCGTTGGAAGAGAAACTTGCGCTCTGATGCTAGGTTGGGATTTTGACACCGCGAAAGAAAGAAACTCATCTAACCTATCAAGACGTACAGCTGGACACACATCTGCATGCATAGCCGGTTATCACAGCCATGATGACGAAAGACTGTGTCTTGAAGGCAAGTATGAACTACAATCAGATTTTCACCAAATTGAGCTCCCCTTAAACCTATCATGCATACCAACCCTTCTAAATCGAGCCTGGGGTTGCATTGATGACGGAGTATGGGAAGGTGGCACAACGTTCTTTTCTCTCCAAAATGACCATTGGTTTAGGCGGAAGATTATCAATGAGAGGCTTCCTTATCCTAATGCAGAATCTCTCCTTCAACTAGGTGGTTCCTCGGGGGATAATTATTCATCTACTTGTCAAGCTCTACAATTTCCCAGAGAGGAAATATCTTCCCAGCTTCTTACTTGTGATGATATGAACATCAGATGCCTGAATGACTCACCTCATAAAAGAACTCCTACTCATTTCATCAAAGATAATGTCAACGTCCACGACAGCTCAGCCCTTTGCCTCCAGATATCGCTCGACAGACAGAAGGCTCAGCCCTTGGGGATTGATATTGACAAGCCAAGCTGGGATGGGAGTGAAAAGGAGATAAGTTTTAATGATGGTGATGTCAATTATATTAAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

587

Amino Acids

66.91

Weight (kDa)

4.79

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20250 AT2G20250 AT2G20250
fragaria_vesca	FvH4_2g19950
malus_domestica	MD10G1171500.v1.1 MD10G1171600.v1.1
prunus_persica	Prupe.8G209900_v2.0.a1 Prupe.8G209900_v2.0.a1 Prupe.8G209900_v2.0.a1
pyrus_communis	pycom05g16880 pycom10g14790
rosa_chinensis	RchiOBHm_Chr6g0285611
rosa_laevigata	RLG00000012622
rosa_multiflora	Rmu_co8369127.1_g000001 Rmu_sc0001356.1_g000025 Rmu_sc0015474.1_g000001 Rmu_sc0017770.1_g000010
rosa_roxburghii	Rroxscaffold_7G00182890
rosa_rugosa	Rorug06G0176200
rosa_samantha	Rh6AG287500 Rh6BG288900 Rh6CG290000 Rh6CG290100 Rh6DG282700 Rh6DG282800
rosa_wichuraiana	Rw6G024720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	10, 79
AccII	CGCG	1 cut(s)	1130
AciI	CCGC	3 cut(s)	850, 1128, 1393
AclI	AACGTT	1 cut(s)	1358
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	605
AdeI	CACNNNGTG	1 cut(s)	228
AfaI	GTAC	3 cut(s)	496, 961, 1165
AfiI	CCNNNNNNNGG	4 cut(s)	122, 407, 641, 875
AgsI	TTSAA	5 cut(s)	64, 74, 307, 1232, 1445
AhlI	ACTAGT	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	1316
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
Alw21I	GWGCWC	2 cut(s)	634, 1275
Alw26I	GTCTC	1 cut(s)	456
AlwI	GGATC	1 cut(s)	108
AlwNI	CAGNNNCTG	1 cut(s)	476
Ama87I	CYCGRG	1 cut(s)	1459
ApoI	RAATTY	1 cut(s)	605
ArsI	GACNNNNNNTTYG	4 cut(s)	104, 136, 1593, 1625
AspLEI	GCGC	1 cut(s)	1100
AsuHPI	GGTGA	5 cut(s)	137, 334, 1253, 1560, 1751
AvaI	CYCGRG	1 cut(s)	1459
BaeGI	GKGCMC	1 cut(s)	15
BanI	GGYRCC	2 cut(s)	10, 79
BanII	GRGCYC	1 cut(s)	1275
Bbv12I	GWGCWC	2 cut(s)	634, 1275
BccI	CCATC	4 cut(s)	46, 219, 1700, 1730
BciT130I	CCWGG	1 cut(s)	1318
BcoDI	GTCTC	1 cut(s)	456
BcuI	ACTAGT	1 cut(s)	191
BlpI	GCTNAGC	2 cut(s)	1627, 1668
Bme1390I	CCNGG	1 cut(s)	1318
BmeT110I	CYCGRG	1 cut(s)	1459
BmiI	GGNNCC	5 cut(s)	12, 81, 234, 561, 1456
BmrFI	CCNGG	1 cut(s)	1318
BmrI	ACTGGG	1 cut(s)	962
BmsI	GCATC	5 cut(s)	118, 187, 1037, 1095, 1544
BmuI	ACTGGG	1 cut(s)	962
BpmI	CTGGAG	1 cut(s)	1625
Bpu1102I	GCTNAGC	2 cut(s)	1627, 1668
BsaJI	CCNNGG	3 cut(s)	1317, 1458, 1674
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 407, 641, 875
Bse118I	RCCGGY	1 cut(s)	1193
Bse1I	ACTGG	1 cut(s)	957
BseBI	CCWGG	1 cut(s)	1318
BseDI	CCNNGG	3 cut(s)	1317, 1458, 1674
BseGI	GGATG	5 cut(s)	38, 589, 823, 1057, 1711
BseLI	CCNNNNNNNGG	4 cut(s)	122, 407, 641, 875
BseMII	CTCAG	2 cut(s)	1641, 1682
BseNI	ACTGG	1 cut(s)	957
BseSI	GKGCMC	1 cut(s)	15
BseYI	CCCAGC	5 cut(s)	406, 640, 874, 1521, 1701
Bsh1236I	CGCG	1 cut(s)	1130
BshNI	GGYRCC	2 cut(s)	10, 79
BsiHKAI	GWGCWC	2 cut(s)	634, 1275
BsiHKCI	CYCGRG	1 cut(s)	1459
BsiSI	CCGG	1 cut(s)	1194
BslI	CCNNNNNNNGG	4 cut(s)	122, 407, 641, 875
BsmAI	GTCTC	1 cut(s)	456
BsoBI	CYCGRG	1 cut(s)	1459
Bsp1286I	GDGCHC	3 cut(s)	15, 634, 1275
Bsp143I	GATC	2 cut(s)	100, 155
Bsp1720I	GCTNAGC	2 cut(s)	1627, 1668
BspACI	CCGC	3 cut(s)	850, 1128, 1393
BspCNI	CTCAG	2 cut(s)	1640, 1681
BspFNI	CGCG	1 cut(s)	1130
BspLI	GGNNCC	5 cut(s)	12, 81, 234, 561, 1456
BspPI	GGATC	1 cut(s)	108
BspQI	GCTCTTC	2 cut(s)	615, 1038
BspT107I	GGYRCC	2 cut(s)	10, 79
BsrFI	RCCGGY	1 cut(s)	1193
BsrI	ACTGG	1 cut(s)	957
BssAI	RCCGGY	1 cut(s)	1193
BssECI	CCNNGG	3 cut(s)	1317, 1458, 1674
BssMI	GATC	2 cut(s)	100, 155
BssT1I	CCWWGG	1 cut(s)	1674
Bst2UI	CCWGG	1 cut(s)	1318
Bst4CI	ACNGT	2 cut(s)	226, 1224
Bst6I	CTCTTC	4 cut(s)	379, 615, 1038, 1081
BstC8I	GCNNGC	1 cut(s)	1186
BstDEI	CTNAG	2 cut(s)	1627, 1668
BstF5I	GGATG	5 cut(s)	38, 589, 823, 1057, 1711
BstFNI	CGCG	1 cut(s)	1130
BstHHI	GCGC	1 cut(s)	1100
BstKTI	GATC	2 cut(s)	103, 158
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	2 cut(s)	100, 155
BstMWI	GCNNNNNNNGC	1 cut(s)	1190
BstNI	CCWGG	1 cut(s)	1318
BstNSI	RCATGY	1 cut(s)	1188
BstSCI	CCNGG	1 cut(s)	1316
BstSLI	GKGCMC	1 cut(s)	15
BstUI	CGCG	1 cut(s)	1130
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BtsCI	GGATG	5 cut(s)	38, 589, 823, 1057, 1711
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	1186
CaiI	CAGNNNCTG	1 cut(s)	476
CfoI	GCGC	1 cut(s)	1100
Cfr10I	RCCGGY	1 cut(s)	1193
Csp6I	GTAC	3 cut(s)	495, 960, 1164
CviQI	GTAC	3 cut(s)	495, 960, 1164
DdeI	CTNAG	2 cut(s)	1627, 1668
DpnI	GATC	2 cut(s)	102, 157
DpnII	GATC	2 cut(s)	100, 155
DraI	TTTAAA	1 cut(s)	1009
DraIII	CACNNNGTG	1 cut(s)	228
Eam1104I	CTCTTC	4 cut(s)	379, 615, 1038, 1081
EarI	CTCTTC	4 cut(s)	379, 615, 1038, 1081
EciI	GGCGGA	1 cut(s)	1408
Ecl136II	GAGCTC	1 cut(s)	1273
Eco130I	CCWWGG	1 cut(s)	1674
Eco24I	GRGCYC	1 cut(s)	1275
Eco32I	GATATC	1 cut(s)	1647
Eco53kI	GAGCTC	1 cut(s)	1273
Eco88I	CYCGRG	1 cut(s)	1459
EcoICRI	GAGCTC	1 cut(s)	1273
EcoRII	CCWGG	1 cut(s)	1316
EcoRV	GATATC	1 cut(s)	1647
EcoT14I	CCWWGG	1 cut(s)	1674
EcoT22I	ATGCAT	2 cut(s)	1190, 1295
EcoT38I	GRGCYC	1 cut(s)	1275
ErhI	CCWWGG	1 cut(s)	1674
FalI	AAGNNNNNCTT	2 cut(s)	1078, 1110
FokI	GGATG	5 cut(s)	25, 596, 830, 1064, 1718
FriOI	GRGCYC	1 cut(s)	1275
GlaI	GCGC	1 cut(s)	1099
GsaI	CCCAGC	5 cut(s)	410, 644, 878, 1525, 1705
GsuI	CTGGAG	1 cut(s)	1625
HapII	CCGG	1 cut(s)	1194
HhaI	GCGC	1 cut(s)	1100
Hin6I	GCGC	1 cut(s)	1098
HinP1I	GCGC	1 cut(s)	1098
HincII	GTYRAC	2 cut(s)	19, 1612
HindII	GTYRAC	2 cut(s)	19, 1612
HpaII	CCGG	1 cut(s)	1194
HphI	GGTGA	5 cut(s)	137, 334, 1253, 1560, 1751
Hpy166II	GTNNAC	3 cut(s)	19, 1612, 1618
Hpy8I	GTNNAC	3 cut(s)	19, 1612, 1618
HpyAV	CCTTC	5 cut(s)	1226, 1313, 1340, 1451, 1657
HpyCH4III	ACNGT	2 cut(s)	226, 1224
HpyCH4IV	ACGT	3 cut(s)	1162, 1358, 1614
HpyCH4V	TGCA	8 cut(s)	263, 396, 965, 1184, 1188, 1293, 1326, 1430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1190
HpyF3I	CTNAG	2 cut(s)	1627, 1668
HpySE526I	ACGT	3 cut(s)	1162, 1358, 1614
HspAI	GCGC	1 cut(s)	1098
Kzo9I	GATC	2 cut(s)	100, 155
LguI	GCTCTTC	2 cut(s)	615, 1038
LmnI	GCTCC	3 cut(s)	182, 637, 1278
LweI	GCATC	5 cut(s)	118, 187, 1037, 1095, 1544
MaeII	ACGT	3 cut(s)	1162, 1358, 1614
MaeIII	GTNAC	2 cut(s)	110, 322
MalI	GATC	2 cut(s)	102, 157
MboI	GATC	2 cut(s)	100, 155
MfeI	CAATTG	1 cut(s)	74
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	3 cut(s)	15, 634, 1275
MlyI	GAGTC	7 cut(s)	32, 56, 353, 467, 716, 935, 1559
MmeI	TCCRAC	4 cut(s)	212, 327, 361, 1063
Mph1103I	ATGCAT	2 cut(s)	1190, 1295
MseI	TTAA	7 cut(s)	450, 573, 807, 1008, 1280, 1731, 1755
MslI	CAYNNNNRTG	3 cut(s)	401, 1183, 1206
MspA1I	CMGCKG	1 cut(s)	1169
MspI	CCGG	1 cut(s)	1194
MspR9I	CCNGG	1 cut(s)	1318
MunI	CAATTG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	1318
MvnI	CGCG	1 cut(s)	1130
MwoI	GCNNNNNNNGC	1 cut(s)	1190
NdeII	GATC	2 cut(s)	100, 155
NlaIV	GGNNCC	5 cut(s)	12, 81, 234, 561, 1456
NmuCI	GTSAC	2 cut(s)	110, 322
NsiI	ATGCAT	2 cut(s)	1190, 1295
NspI	RCATGY	1 cut(s)	1188
PaeI	GCATGC	1 cut(s)	1188
PciSI	GCTCTTC	2 cut(s)	615, 1038
PfeI	GAWTC	5 cut(s)	284, 518, 752, 992, 1433
PflFI	GACNNNGTC	1 cut(s)	1224
PleI	GAGTC	7 cut(s)	31, 55, 352, 467, 715, 935, 1559
PpsI	GAGTC	7 cut(s)	31, 55, 352, 467, 715, 935, 1559
Psp124BI	GAGCTC	1 cut(s)	1275
Psp1406I	AACGTT	1 cut(s)	1358
Psp6I	CCWGG	1 cut(s)	1316
PspFI	CCCAGC	5 cut(s)	406, 640, 874, 1521, 1701
PspGI	CCWGG	1 cut(s)	1316
PspN4I	GGNNCC	5 cut(s)	12, 81, 234, 561, 1456
PstNI	CAGNNNCTG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	100
PsyI	GACNNNGTC	1 cut(s)	1224
PvuII	CAGCTG	1 cut(s)	1169
RsaI	GTAC	3 cut(s)	496, 961, 1165
RsaNI	GTAC	3 cut(s)	495, 960, 1164
RseI	CAYNNNNRTG	3 cut(s)	401, 1183, 1206
SacI	GAGCTC	1 cut(s)	1275
SapI	GCTCTTC	2 cut(s)	615, 1038
SaqAI	TTAA	7 cut(s)	450, 573, 807, 1008, 1280, 1731, 1755
Sau3AI	GATC	2 cut(s)	100, 155
SchI	GAGTC	7 cut(s)	32, 56, 353, 467, 716, 935, 1559
ScrFI	CCNGG	1 cut(s)	1318
SduI	GDGCHC	3 cut(s)	15, 634, 1275
SfaNI	GCATC	5 cut(s)	118, 187, 1037, 1095, 1544
SmiMI	CAYNNNNRTG	3 cut(s)	401, 1183, 1206
SpeI	ACTAGT	1 cut(s)	191
SphI	GCATGC	1 cut(s)	1188
SsiI	CCGC	3 cut(s)	850, 1128, 1393
SspI	AATATT	1 cut(s)	1076
SstI	GAGCTC	1 cut(s)	1275
StyD4I	CCNGG	1 cut(s)	1316
StyI	CCWWGG	1 cut(s)	1674
TaaI	ACNGT	2 cut(s)	226, 1224
TaiI	ACGT	3 cut(s)	1165, 1361, 1617
TaqI	TCGA	2 cut(s)	1312, 1653
TatI	WGTACW	1 cut(s)	494
TfiI	GAWTC	5 cut(s)	284, 518, 752, 992, 1433
Tru1I	TTAA	7 cut(s)	450, 573, 807, 1008, 1280, 1731, 1755
Tru9I	TTAA	7 cut(s)	450, 573, 807, 1008, 1280, 1731, 1755
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	2 cut(s)	110, 322
Tsp45I	GTSAC	2 cut(s)	110, 322
TspGWI	ACGGA	1 cut(s)	1350
TspRI	CASTG	1 cut(s)	231
Tth111I	GACNNNGTC	1 cut(s)	1224
XapI	RAATTY	1 cut(s)	605
XceI	RCATGY	1 cut(s)	1188
Zsp2I	ATGCAT	2 cut(s)	1190, 1295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.