pycom05g16880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0006703
Physical Location & Seq
Reverse (-)
20173329 .. 20174054
726 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g16880.1

Sequence Viewer

Length: 441 bp
ATGAAACTCCTTCAATTCCCTCCAAAATCAAAACATGAAAATAAAGCTAGGGTTTTAGCTGATGGTGCTGATCACAGACTTCTCAGTCTACGTTACCGCACCATGATGCGTAATACTTCCGAATCGAACGCCAAAGATCCAATGCAGATCAGAATTCCATCACATGGAGGTTTTCTTGGGATTCAGAGCTCCGATACCCGATTATCCCCATCACAACGCCTCCAAAAGACTCACAGGTTAATCCAAACCCTAGAAGACCTCTTTGAATGTCTGACTCTCCCTTCCTCTCATTGCCTTCCACCCACTTTGTTTGCTTGTCTTCTTCCTTCATCTCTGCAATTTTTTCATGTATGGATAAATATGAAGTTGCGTTGCATCATTTCTCATATGGCATCGAAACGGTCTGAAGGAGCTCAAGGACGAAGTATTGTGATTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.59

Weight (kDa)

10.12

Isoelectric Point (pI)

59.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 84
AccB7I CCANNNNNTGG 1 cut(s) 164
AccI GTMKAC 1 cut(s) 88
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 131
AcsI RAATTY 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 426
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 2 cut(s) 14, 266
AluBI AGCT 4 cut(s) 47, 59, 189, 413
AluI AGCT 4 cut(s) 47, 59, 189, 413
Alw21I GWGCWC 2 cut(s) 191, 415
AlwI GGATC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 153
BanII GRGCYC 2 cut(s) 191, 415
BbsI GAAGAC 2 cut(s) 261, 311
Bbv12I GWGCWC 2 cut(s) 191, 415
BccI CCATC 3 cut(s) 56, 166, 217
BclI TGATCA 1 cut(s) 70
BfaI CTAG 2 cut(s) 48, 251
BmsI GCATC 3 cut(s) 96, 384, 401
BpiI GAAGAC 2 cut(s) 261, 311
BpuEI CTTGAG 1 cut(s) 399
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 97
BsiHKAI GWGCWC 2 cut(s) 191, 415
BslI CCNNNNNNNGG 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 191, 415
Bsp143I GATC 3 cut(s) 70, 136, 147
BspACI CCGC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 96
BspPI GGATC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 289
BssMI GATC 3 cut(s) 70, 136, 147
Bst4CI ACNGT 1 cut(s) 402
BstDEI CTNAG 1 cut(s) 83
BstKTI GATC 3 cut(s) 73, 139, 150
BstMBI GATC 3 cut(s) 70, 136, 147
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstV2I GAAGAC 2 cut(s) 261, 311
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
CspCI CAANNNNNGTGG 4 cut(s) 288, 292, 323, 327
CviAII CATG 4 cut(s) 35, 103, 164, 347
CviJI RGCY 4 cut(s) 47, 59, 189, 413
CviKI_1 RGCY 4 cut(s) 47, 59, 189, 413
DdeI CTNAG 1 cut(s) 83
DpnI GATC 3 cut(s) 72, 138, 149
DpnII GATC 3 cut(s) 70, 136, 147
DrdI GACNNNNNNGTC 1 cut(s) 84
DseDI GACNNNNNNGTC 1 cut(s) 84
Ecl136II GAGCTC 2 cut(s) 189, 413
Eco24I GRGCYC 2 cut(s) 191, 415
Eco53kI GAGCTC 2 cut(s) 189, 413
Eco57I CTGAAG 1 cut(s) 426
EcoICRI GAGCTC 2 cut(s) 189, 413
EcoRI GAATTC 1 cut(s) 153
EcoT38I GRGCYC 2 cut(s) 191, 415
FaeI CATG 4 cut(s) 38, 106, 167, 350
FaiI YATR 9 cut(s) 36, 104, 165, 348, 352, 362, 387, 389, 439
FatI CATG 4 cut(s) 34, 102, 163, 346
FauNDI CATATG 1 cut(s) 387
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 1 cut(s) 88
FriOI GRGCYC 2 cut(s) 191, 415
FspBI CTAG 2 cut(s) 48, 251
Hin1II CATG 4 cut(s) 38, 106, 167, 350
HinfI GANTC 4 cut(s) 122, 181, 229, 274
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 6 cut(s) 121, 152, 186, 193, 273, 406
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 5 cut(s) 20, 291, 305, 336, 401
HpyCH4III ACNGT 1 cut(s) 402
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 145, 337, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 4 cut(s) 38, 106, 167, 350
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 3 cut(s) 70, 136, 147
LmnI GCTCC 2 cut(s) 194, 410
LpnPI CCDG 1 cut(s) 220
LweI GCATC 3 cut(s) 96, 384, 401
MaeI CTAG 2 cut(s) 48, 251
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 92
MalI GATC 3 cut(s) 72, 138, 149
MboI GATC 3 cut(s) 70, 136, 147
MboII GAAGA 3 cut(s) 266, 311, 314
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 2 cut(s) 191, 415
MluCI AATT 3 cut(s) 14, 153, 338
MlyI GAGTC 2 cut(s) 223, 268
MnlI CCTC 5 cut(s) 30, 161, 230, 269, 295
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeI CATATG 1 cut(s) 387
NdeII GATC 3 cut(s) 70, 136, 147
NlaIII CATG 4 cut(s) 38, 106, 167, 350
PfeI GAWTC 2 cut(s) 122, 181
PflMI CCANNNNNTGG 1 cut(s) 164
PleI GAGTC 2 cut(s) 223, 268
PpsI GAGTC 2 cut(s) 223, 268
Psp124BI GAGCTC 2 cut(s) 191, 415
PsuI RGATCY 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 104
SacI GAGCTC 2 cut(s) 191, 415
SaqAI TTAA 1 cut(s) 239
Sau3AI GATC 3 cut(s) 70, 136, 147
SchI GAGTC 2 cut(s) 223, 268
SduI GDGCHC 2 cut(s) 191, 415
SetI ASST 8 cut(s) 49, 61, 94, 172, 191, 239, 261, 415
SfaNI GCATC 3 cut(s) 96, 384, 401
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 3 cut(s) 14, 153, 338
SsiI CCGC 1 cut(s) 97
SspMI CTAG 2 cut(s) 48, 251
SstI GAGCTC 2 cut(s) 191, 415
TaaI ACNGT 1 cut(s) 402
TaiI ACGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 125, 395
TasI AATT 3 cut(s) 14, 153, 338
TfiI GAWTC 2 cut(s) 122, 181
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TspDTI ATGAA 5 cut(s) 17, 51, 318, 335, 377
Van91I CCANNNNNTGG 1 cut(s) 164
XapI RAATTY 1 cut(s) 153
XmiI GTMKAC 1 cut(s) 88
XspI CTAG 2 cut(s) 48, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.