Rh6DG282800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006703
Physical Location & Seq
Reverse (-)
47695691 .. 47697226
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG282800.1

Sequence Viewer

Length: 753 bp
ATGAAGCGTAAATTTTCCGAACGCATCCCCAAAGCTCCATGGCAGATCCAATCTCCTTCACCGCGAGGTCATCGGCTTCGTCGCAGCTCCGATTCCCGGTTCCCCATCACAACGCCCCCAACAACCACAGATATCAGCGGCAAGAAAGGAGTCAAATTTACGAATCTCGATGACGAAAATCGCAGACCCCCAAGAACTGAATCTGATAATGCGAAGACTTCCGAGTATGCATTCTTCAAGAAATTGAAGGAAGATGCAAGCCACAAACATCACTCCTGTTCTGAGAGCAAAGAGGCGTACCGAGGAAGCAATTCAAAGCCGAGAGGCAGTTCCAGAGATAGGACTAATATGGTTCGGAATAAGAGCGACGACGTCAGGTCCTCAGTGTTCAACAAAGATGTCACAGAAGATAGCTTTGAGTCATCTCACGCACTACCTGGTAGTGCATCGAGAAACTCAGGATCAAATAGGACGAGAGCTCAAGCAACGTTGGAGGATTTACACAGGAAAAAGAAATATATGGTAGAGGAAACAGAAAACACCTTGAACCCTAAAGGAAAAGGGTTAGATCTCTTTGAAGAGACAGAAACTCAATGCAGGCATGCAAACGTTTTTGATAGGAAGAGACAGAAATTACTTCATTGGGTCAGAGAAACCTCCATTCCCGAAATTGATTACGGGTCCAGTTTGGTTTCTGTCCTCCTCAGTCGGCTGATCCCCACGAGCAATGGGAACAATGTATCCTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

28.48

Weight (kDa)

9.87

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 375
AccII CGCG 1 cut(s) 64
AciI CCGC 2 cut(s) 62, 138
AclI AACGTT 2 cut(s) 488, 609
AclWI GGATC 3 cut(s) 40, 469, 709
AcsI RAATTY 2 cut(s) 11, 155
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 2 cut(s) 96, 339
AgsI TTSAA 6 cut(s) 238, 247, 315, 391, 547, 578
AhdI GACNNNNNGTC 1 cut(s) 376
AjnI CCWGG 1 cut(s) 436
AloI GAACNNNNNNTCC 1 cut(s) 725
AluBI AGCT 4 cut(s) 35, 87, 414, 479
AluI AGCT 4 cut(s) 35, 87, 414, 479
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 2 cut(s) 575, 619
AlwI GGATC 3 cut(s) 40, 469, 709
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 2 cut(s) 11, 155
Asp700I GAANNNNTTC 1 cut(s) 310
AspS9I GGNCC 2 cut(s) 378, 681
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 51
AvaII GGWCC 2 cut(s) 378, 681
BanII GRGCYC 1 cut(s) 481
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BauI CACGAG 1 cut(s) 721
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 481
BbvI GCAGC 1 cut(s) 96
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 438
BciVI GTATCC 1 cut(s) 751
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 575, 619
BfuI GTATCC 1 cut(s) 751
BglII AGATCT 1 cut(s) 568
BisI GCNGC 2 cut(s) 85, 139
BlsI GCNGC 2 cut(s) 86, 140
Bme1390I CCNGG 2 cut(s) 97, 438
Bme18I GGWCC 2 cut(s) 378, 681
BmeRI GACNNNNNGTC 1 cut(s) 376
BmgT120I GGNCC 2 cut(s) 378, 681
BmiI GGNNCC 2 cut(s) 101, 682
BmrFI CCNGG 2 cut(s) 97, 438
BmsI GCATC 3 cut(s) 33, 244, 455
BpiI GAAGAC 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 465
BpuMI CCSGG 1 cut(s) 97
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 2 cut(s) 38, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 339
Bse1I ACTGG 1 cut(s) 684
Bse3DI GCAATG 1 cut(s) 733
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 38, 301
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 96, 339
BseMI GCAATG 1 cut(s) 733
BseMII CTCAG 4 cut(s) 273, 396, 471, 718
BseNI ACTGG 1 cut(s) 684
BseRI GAGGAG 1 cut(s) 692
BseXI GCAGC 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 481
BsiSI CCGG 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 96, 339
BsmAI GTCTC 2 cut(s) 575, 619
BsmI GAATGC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 481
Bsp143I GATC 4 cut(s) 45, 461, 568, 714
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 2 cut(s) 62, 138
BspCNI CTCAG 4 cut(s) 274, 395, 470, 717
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 2 cut(s) 101, 682
BspPI GGATC 3 cut(s) 40, 469, 709
BsrDI GCAATG 1 cut(s) 733
BsrI ACTGG 1 cut(s) 684
BssECI CCNNGG 2 cut(s) 38, 301
BssMI GATC 4 cut(s) 45, 461, 568, 714
BssNI GRCGYC 1 cut(s) 372
BssSI CACGAG 1 cut(s) 721
BssT1I CCWWGG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 721
Bst2UI CCWGG 1 cut(s) 438
Bst6I CTCTTC 2 cut(s) 573, 617
BstACI GRCGYC 1 cut(s) 372
BstC8I GCNNGC 3 cut(s) 259, 599, 603
BstDEI CTNAG 4 cut(s) 282, 382, 457, 704
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 24
BstFNI CGCG 1 cut(s) 64
BstKTI GATC 4 cut(s) 48, 464, 571, 717
BstMAI GTCTC 2 cut(s) 575, 619
BstMBI GATC 4 cut(s) 45, 461, 568, 714
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 605
BstSCI CCNGG 2 cut(s) 95, 436
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 2 cut(s) 45, 568
BstYI RGATCY 2 cut(s) 45, 568
BsuI GTATCC 1 cut(s) 751
BtgI CCRYGG 1 cut(s) 38
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 3 cut(s) 259, 599, 603
Cfr13I GGNCC 2 cut(s) 378, 681
CsiI ACCWGGT 1 cut(s) 436
Csp6I GTAC 1 cut(s) 298
CviAII CATG 2 cut(s) 39, 602
CviJI RGCY 8 cut(s) 35, 76, 87, 261, 319, 414, 479, 712
CviKI_1 RGCY 8 cut(s) 35, 76, 87, 261, 319, 414, 479, 712
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 4 cut(s) 282, 382, 457, 704
DpnI GATC 4 cut(s) 47, 463, 570, 716
DpnII GATC 4 cut(s) 45, 461, 568, 714
DriI GACNNNNNGTC 1 cut(s) 376
Eam1104I CTCTTC 2 cut(s) 573, 617
Eam1105I GACNNNNNGTC 1 cut(s) 376
EarI CTCTTC 2 cut(s) 573, 617
Ecl136II GAGCTC 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 481
Eco32I GATATC 1 cut(s) 133
Eco47I GGWCC 2 cut(s) 378, 681
Eco53kI GAGCTC 1 cut(s) 479
EcoICRI GAGCTC 1 cut(s) 479
EcoO109I RGGNCCY 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 436
EcoRV GATATC 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 2 cut(s) 42, 605
FaiI YATR 6 cut(s) 40, 228, 350, 519, 521, 603
FatI CATG 2 cut(s) 38, 601
Fnu4HI GCNGC 2 cut(s) 85, 139
FokI GGATG 1 cut(s) 11
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 2 cut(s) 85, 139
GluI GCNGC 2 cut(s) 85, 139
HapII CCGG 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 2 cut(s) 42, 605
HinfI GANTC 5 cut(s) 92, 150, 163, 200, 419
HpaII CCGG 1 cut(s) 97
HphI GGTGA 1 cut(s) 51
Hpy188I TCNGA 7 cut(s) 19, 91, 205, 223, 283, 357, 650
Hpy188III TCNNGA 6 cut(s) 167, 238, 333, 450, 459, 665
Hpy99I CGWCG 3 cut(s) 84, 371, 374
HpyAV CCTTC 2 cut(s) 66, 241
HpyCH4IV ACGT 3 cut(s) 372, 488, 609
HpyCH4V TGCA 5 cut(s) 230, 257, 446, 597, 605
HpyF3I CTNAG 4 cut(s) 282, 382, 457, 704
HpySE526I ACGT 3 cut(s) 372, 488, 609
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 2 cut(s) 42, 605
Kzo9I GATC 4 cut(s) 45, 461, 568, 714
LmnI GCTCC 2 cut(s) 40, 92
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 3 cut(s) 33, 244, 455
MabI ACCWGGT 1 cut(s) 436
MaeII ACGT 3 cut(s) 372, 488, 609
MaeIII GTNAC 1 cut(s) 400
MalI GATC 4 cut(s) 47, 463, 570, 716
MboI GATC 4 cut(s) 45, 461, 568, 714
MboII GAAGA 6 cut(s) 226, 226, 263, 419, 590, 634
MflI RGATCY 2 cut(s) 45, 568
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 6 cut(s) 11, 155, 242, 310, 632, 669
MlyI GAGTC 2 cut(s) 159, 428
MmeI TCCRAC 1 cut(s) 471
Mph1103I ATGCAT 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 310
MseI TTAA 1 cut(s) 751
MspA1I CMGCKG 1 cut(s) 138
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 2 cut(s) 97, 438
Mva1269I GAATGC 1 cut(s) 230
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 64
NciI CCSGG 1 cut(s) 97
NcoI CCATGG 1 cut(s) 38
NdeII GATC 4 cut(s) 45, 461, 568, 714
NlaIII CATG 2 cut(s) 42, 605
NlaIV GGNNCC 2 cut(s) 101, 682
NmeAIII GCCGAG 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 400
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 1 cut(s) 605
PaeI GCATGC 1 cut(s) 605
PctI GAATGC 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 3 cut(s) 92, 163, 200
PflFI GACNNNGTC 1 cut(s) 371
PkrI GCNGC 2 cut(s) 86, 140
PleI GAGTC 2 cut(s) 158, 427
PpsI GAGTC 2 cut(s) 158, 427
PpuMI RGGWCCY 1 cut(s) 378
Psp124BI GAGCTC 1 cut(s) 481
Psp1406I AACGTT 2 cut(s) 488, 609
Psp5II RGGWCCY 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 2 cut(s) 101, 682
PspPI GGNCC 2 cut(s) 378, 681
PspPPI RGGWCCY 1 cut(s) 378
PsuI RGATCY 2 cut(s) 45, 568
PsyI GACNNNGTC 1 cut(s) 371
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SacI GAGCTC 1 cut(s) 481
SaqAI TTAA 1 cut(s) 751
SatI GCNGC 2 cut(s) 85, 139
Sau3AI GATC 4 cut(s) 45, 461, 568, 714
Sau96I GGNCC 2 cut(s) 378, 681
SchI GAGTC 2 cut(s) 159, 428
ScrFI CCNGG 2 cut(s) 97, 438
SduI GDGCHC 1 cut(s) 481
SexAI ACCWGGT 1 cut(s) 436
SfaNI GCATC 3 cut(s) 33, 244, 455
SinI GGWCC 2 cut(s) 378, 681
SmlI CTYRAG 1 cut(s) 480
SmoI CTYRAG 1 cut(s) 480
SphI GCATGC 1 cut(s) 605
Sse9I AATT 6 cut(s) 11, 155, 242, 310, 632, 669
SsiI CCGC 2 cut(s) 62, 138
SstI GAGCTC 1 cut(s) 481
StyD4I CCNGG 2 cut(s) 95, 436
StyI CCWWGG 1 cut(s) 38
TaiI ACGT 3 cut(s) 375, 491, 612
TaqI TCGA 2 cut(s) 168, 449
TasI AATT 6 cut(s) 11, 155, 242, 310, 632, 669
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 3 cut(s) 92, 163, 200
Tru1I TTAA 1 cut(s) 751
Tru9I TTAA 1 cut(s) 751
TscAI CASTG 1 cut(s) 390
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 1 cut(s) 84
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 2 cut(s) 17, 629
TspRI CASTG 1 cut(s) 390
Tth111I GACNNNGTC 1 cut(s) 371
VpaK11BI GGWCC 2 cut(s) 378, 681
XapI RAATTY 2 cut(s) 11, 155
XceI RCATGY 1 cut(s) 605
XmnI GAANNNNTTC 1 cut(s) 310
ZraI GACGTC 1 cut(s) 373
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.