Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006703

Physical Location & Seq

Genomic Coordinates Reverse (-)

26431667 .. 26433128

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1171600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAAGCGTAAGATTTCCGATTCCAACCACAAAGATCCGCTTCAAATCCACATTCCATCGCATCGTGGAGGTTTTCATGGGATTCGGAGCTCCGATTCCCGATTCCCCATCGCAACGCCCCCAAGAACAACAGATACCAGCTGCAAGAAAAGAGTCACATTTACAGATTCACAGGACGATGAAAATCAGAGACCCCCAAGATGCGAATTTGCTGATAATGCCAAGACTTCCGAGTACGCCTTCTTCAAGAAATTGAAGGAAGGTGCAGGCCGTAAAGCGCAGTCTTGTTCTCTCCGTGAAGAGGCCGACCAAAGAAAGAATTCCGAGTCCAGGGACTGTTCCAGAGAGAGGATCAATGTGGTCCGGAATAAGAGAGAGGACACGAGGTCTTCATTTCTCAACGAAAATGCTACACCAGAACTAAATATCAAGAGAACTTGTGCAACCTTGGAGAACGCACATAGGAGACAGAACAATATGGTGGAGGAATATGAAAATTCCTTGAGAAGTAAAGGTAATTCGTATGTGAAATCTCTACATTTTTTCTTTGTTATGCTGATTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.87

Weight (kDa)

9.58

Isoelectric Point (pI)

61.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20250 AT2G20250 AT2G20250
fragaria_vesca	FvH4_2g19950
malus_domestica	MD10G1171500.v1.1 MD10G1171600.v1.1
prunus_persica	Prupe.8G209900_v2.0.a1 Prupe.8G209900_v2.0.a1 Prupe.8G209900_v2.0.a1
pyrus_communis	pycom05g16880 pycom10g14790
rosa_chinensis	RchiOBHm_Chr6g0285611
rosa_laevigata	RLG00000012622
rosa_multiflora	Rmu_co8369127.1_g000001 Rmu_sc0001356.1_g000025 Rmu_sc0015474.1_g000001 Rmu_sc0017770.1_g000010
rosa_roxburghii	Rroxscaffold_7G00182890
rosa_rugosa	Rorug06G0176200
rosa_samantha	Rh6AG287500 Rh6BG288900 Rh6CG290000 Rh6CG290100 Rh6DG282700 Rh6DG282800
rosa_wichuraiana	Rw6G024720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	363
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	2 cut(s)	29, 359
AcsI	RAATTY	3 cut(s)	206, 319, 496
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	301, 330, 348
AgsI	TTSAA	3 cut(s)	44, 247, 256
AhdI	GACNNNNNGTC	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	329
AluBI	AGCT	2 cut(s)	90, 141
AluI	AGCT	2 cut(s)	90, 141
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	2 cut(s)	184, 460
AlwI	GGATC	2 cut(s)	29, 359
AlwNI	CAGNNNCTG	1 cut(s)	336
Aor13HI	TCCGGA	1 cut(s)	363
AoxI	GGCC	2 cut(s)	268, 303
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	3 cut(s)	206, 319, 496
Asp700I	GAANNNNTTC	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	361
AvaII	GGWCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	92
BarI	GAAGNNNNNNTAC	2 cut(s)	227, 259
BauI	CACGAG	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	2 cut(s)	64, 116
BceAI	ACGGC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	184, 460
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	361
BmeRI	GACNNNNNGTC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	331
BmsI	GCATC	2 cut(s)	70, 191
BpiI	GAAGAC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	523
BsaBI	GATNNNNATC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	330, 447
BsaWI	WCCGGW	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 330, 348
Bse8I	GATNNNNATC	1 cut(s)	183
BseAI	TCCGGA	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	331
BseDI	CCNNGG	2 cut(s)	330, 447
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	3 cut(s)	301, 330, 348
BseXI	GCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	270, 305
BsiHKAI	GWGCWC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	364
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	3 cut(s)	301, 330, 348
BsmAI	GTCTC	2 cut(s)	184, 460
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	270, 305
Bso31I	GGTCTC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	363
Bsp143I	GATC	2 cut(s)	34, 351
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	270, 305
BspEI	TCCGGA	1 cut(s)	363
BspPI	GGATC	2 cut(s)	29, 359
BspTNI	GGTCTC	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	330, 447
BssMI	GATC	2 cut(s)	34, 351
BssSI	CACGAG	1 cut(s)	382
BssT1I	CCWWGG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	2 cut(s)	37, 354
BstMAI	GTCTC	2 cut(s)	184, 460
BstMBI	GATC	2 cut(s)	34, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	270, 305
BtgZI	GCGATG	2 cut(s)	42, 94
Cac8I	GCNNGC	1 cut(s)	268
CaiI	CAGNNNCTG	1 cut(s)	336
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	4 cut(s)	90, 141, 270, 305
CviKI_1	RGCY	4 cut(s)	90, 141, 270, 305
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	2 cut(s)	36, 353
DpnII	GATC	2 cut(s)	34, 351
DriI	GACNNNNNGTC	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	294
Eam1105I	GACNNNNNGTC	1 cut(s)	385
EarI	CTCTTC	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	1 cut(s)	80
FaiI	YATR	6 cut(s)	78, 462, 479, 492, 525, 554
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	142
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	142
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	270, 305
HapII	CCGG	1 cut(s)	364
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HinfI	GANTC	7 cut(s)	20, 82, 95, 102, 153, 167, 326
HpaII	CCGG	1 cut(s)	364
Hpy188I	TCNGA	6 cut(s)	19, 87, 94, 189, 232, 325
Hpy188III	TCNNGA	5 cut(s)	99, 247, 342, 364, 430
HpyAV	CCTTC	3 cut(s)	250, 250, 254
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4V	TGCA	3 cut(s)	144, 266, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	1 cut(s)	278
Kpn2I	TCCGGA	1 cut(s)	363
Kzo9I	GATC	2 cut(s)	34, 351
LmnI	GCTCC	2 cut(s)	87, 95
LpnPI	CCDG	8 cut(s)	151, 158, 252, 316, 343, 355, 377, 429
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	2 cut(s)	70, 191
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	2 cut(s)	36, 353
MboI	GATC	2 cut(s)	34, 351
MboII	GAAGA	3 cut(s)	235, 311, 381
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	5 cut(s)	206, 251, 319, 496, 517
MlyI	GAGTC	2 cut(s)	162, 335
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	6 cut(s)	62, 295, 342, 370, 378, 478
MroI	TCCGGA	1 cut(s)	363
MroXI	GAANNNNTTC	1 cut(s)	319
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	331
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	1 cut(s)	218
NdeII	GATC	2 cut(s)	34, 351
NlaIII	CATG	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	319
PfeI	GAWTC	5 cut(s)	20, 82, 95, 102, 167
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	2 cut(s)	161, 334
PpsI	GAGTC	2 cut(s)	161, 334
Psp124BI	GAGCTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	361
PsrI	GAACNNNNNNTAC	2 cut(s)	118, 150
PstNI	CAGNNNCTG	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	141
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SacI	GAGCTC	1 cut(s)	92
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	2 cut(s)	34, 351
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	2 cut(s)	162, 335
ScrFI	CCNGG	1 cut(s)	331
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	7 cut(s)	73, 92, 143, 265, 389, 449, 517
SfaNI	GCATC	2 cut(s)	70, 191
SinI	GGWCC	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	5 cut(s)	206, 251, 319, 496, 517
SsiI	CCGC	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	329
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	338
TasI	AATT	5 cut(s)	206, 251, 319, 496, 517
TfiI	GAWTC	5 cut(s)	20, 82, 95, 102, 167
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	5 cut(s)	17, 65, 195, 381, 507
TspGWI	ACGGA	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	3 cut(s)	206, 319, 496
XmnI	GAANNNNTTC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.