Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006703

Physical Location & Seq

Genomic Coordinates Reverse (-)

51432359 .. 51436401

Gene Structure 4043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG288900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2004 bp

ATGGTAGAGGAAACTGAAAACACCTTGAAACCTAAGGGAAAAGGGTTAGATCTTTTTGAAGAGACAGAAACTCAATGCAGGCATGCAAACGTTTTTGATAGGAAGAGACAGAAATTACTTCATTGGGTCAGAGAAACCTCCATTCCCGAAATTGATGACGGGTCCAGTTTGGTTTCTGTCCTCCTCAGTCGGCTGATCCCCATGAGCAATGGGAACAATAATGTTAAGAATCCAAAGTTAATGAAAGTGGTGCCCGTTGACGAGTCTATGCCACTTCCATCCTTTGAGTCAGATATTCATTTCAAGGAACTTCAATTGGCACCTACTAAAAGCTTTATGGATCTTGGTTGTGACCCTTGTTTCGGTGATGCGACATTATCTTGTAGGGAAAAGAGATTAAGAGATATGGTTTCCTGCTCCTATTCTCCAACTAGTGATGCTTACAAGAACCATCTTGATTACACAGTGTGGGAACCTGCCTCTGAATTACTAGGAGGAAGTGCAATTTTATGTCCGAATAGTGATTCATATTCTATTCTCCCATTCAAAGAATATGGATTGGTGACATCTGGCTATGTCAAAGAGTCGGATATATTCTATCAGCCACCTGAATATATGGTTGGAAGAGAGCCATGCACTCCTATGCTGGGTTGGGATTTTGATAGGATAGATGAAGAAAGAAAATTATTTAACTTGTCAAGATACAGAGCAGACTCTGAACTACTAGGAAGTAGTACAATGTCATGTCCTATGATTGATTCAGATTATGTTCTTCCATTCAGGGAATATGGATTGAGGGAACCTAGCCATGTTAAAGAGCTGGATGTACTCTGTCAGCCAAATGAATTTATGGTTCGGGAAGAGCTAGGTGCTCCTATGCTGGGTTGGGATTTTGATAGCACAGATGAAGAAAGAAAATTATCTAACTTGTCAAGATACGGAGTGGAGTCTAAACTACTAGGAAGTAGTCCAATGTCATGTCCTATGATTGATTCAGATTATGTACTTCCATTCAGGGAATATGGATTGAGGGAAACTAGCCATGTTAAAGAGCTGGATGTATTCTGTCAGCCGAATGAATATATGGTGCGGAAAGAGCTATGTGTTCCTATGCTGGGTTGGGATTTTGATAGCACAGATGAAGAAAGAAACTTATCTAGCTTATCAAGATATAGAGCTGACTCTGAATTACTGGGAGGTACTGCAATTTCATGCTCTATGAGTGATGTAGATTCTGTGCTTCCATTTAAAGAATATGGATTGAGGGCATCTAGCCATGCCGAAGAGCTGGATGTTTTCTATAAGCCAAACAAATATTTCGTTGGAAGAGAAACTTGCGCTCTGATGCTAGGTTGGGATTTTGACACCGTGAAAGAAAGAAACTCATCTAACCTATCAAGACGTACAGCTGGACACACATCTGCATGCATAGCTGGTTATCACAGCCATGATGACGAAAGACAGTGTCTTGAAGGCAAGTATGAACTACAATCAGATTTTCACCAAATTGAGCTCCCCTTAAACCTATCATGCATACCAACCCTTCTAAATCGAGCCTGGGGTTGCATTGATGACAGAGTATGGGAAGGTGGCACAACGTTCTTTTCTCTCCAAAATGACCATTGGTTTAGGCGGAAGATTATCAATGAGGGGCATCCTTATCCTAATGCAGAATCTCTCCTTCAACTAGGTGGTTCCTCGGGGGATAATTATTCATCTACTTGTCAAGCTCTACAATTTCCCAGAGAGGAAATATCTTCCCAGCTTCTTACTTGTGATGATATGAACATCAGATGCCCGAATGACTCACCTCATAAAAGAACTCTTACTCATTTCATCAAAGATAAGGTCAACGTCCACGACAGCTCAGCCCTTTGCCTCCAGATATCGCTCGACAGACAGAAGGCTCAGCCCTTGGGGATTGATATTGACAGGCCAAGCTGGGATGGGAGTGAAAGGGAGATAAGTTTTGATGATGGTGATGTCAATTATATTCAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

667

Amino Acids

76.02

Weight (kDa)

4.82

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20250 AT2G20250 AT2G20250
fragaria_vesca	FvH4_2g19950
malus_domestica	MD10G1171500.v1.1 MD10G1171600.v1.1
prunus_persica	Prupe.8G209900_v2.0.a1 Prupe.8G209900_v2.0.a1 Prupe.8G209900_v2.0.a1
pyrus_communis	pycom05g16880 pycom10g14790
rosa_chinensis	RchiOBHm_Chr6g0285611
rosa_laevigata	RLG00000012622
rosa_multiflora	Rmu_co8369127.1_g000001 Rmu_sc0001356.1_g000025 Rmu_sc0015474.1_g000001 Rmu_sc0017770.1_g000010
rosa_roxburghii	Rroxscaffold_7G00182890
rosa_rugosa	Rorug06G0176200
rosa_samantha	Rh6AG287500 Rh6BG288900 Rh6CG290000 Rh6CG290100 Rh6DG282700 Rh6DG282800
rosa_wichuraiana	Rw6G024720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
AccB1I	GGYRCC	2 cut(s)	250, 319
AciI	CCGC	2 cut(s)	1090, 1633
AclI	AACGTT	2 cut(s)	90, 1598
AclWI	GGATC	2 cut(s)	190, 348
AcsI	RAATTY	1 cut(s)	845
AdeI	CACNNNGTG	1 cut(s)	468
AfaI	GTAC	5 cut(s)	736, 828, 1005, 1201, 1405
AfiI	CCNNNNNNNGG	4 cut(s)	362, 647, 881, 1115
AgsI	TTSAA	8 cut(s)	28, 59, 304, 314, 547, 1472, 1685, 1997
AhlI	ACTAGT	1 cut(s)	431
AjnI	CCWGG	1 cut(s)	1556
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
Alw21I	GWGCWC	2 cut(s)	874, 1515
Alw26I	GTCTC	2 cut(s)	56, 100
AlwI	GGATC	2 cut(s)	190, 348
AlwNI	CAGNNNCTG	1 cut(s)	716
Ama87I	CYCGRG	1 cut(s)	1699
AoxI	GGCC	1 cut(s)	1934
ApoI	RAATTY	1 cut(s)	845
ArsI	GACNNNNNNTTYG	4 cut(s)	344, 376, 1833, 1865
AspLEI	GCGC	1 cut(s)	1340
AspS9I	GGNCC	1 cut(s)	162
AsuHPI	GGTGA	5 cut(s)	377, 574, 1493, 1800, 1991
AvaI	CYCGRG	1 cut(s)	1699
AvaII	GGWCC	1 cut(s)	162
AxyI	CCTNAGG	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	255
BanI	GGYRCC	2 cut(s)	250, 319
BanII	GRGCYC	1 cut(s)	1515
Bbv12I	GWGCWC	2 cut(s)	874, 1515
BccI	CCATC	4 cut(s)	286, 459, 1940, 1970
BciT130I	CCWGG	1 cut(s)	1558
BcoDI	GTCTC	2 cut(s)	56, 100
BcuI	ACTAGT	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	484
BglII	AGATCT	1 cut(s)	49
BlpI	GCTNAGC	2 cut(s)	1867, 1908
Bme1390I	CCNGG	1 cut(s)	1558
Bme18I	GGWCC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	1699
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	6 cut(s)	163, 252, 321, 474, 801, 1696
BmrFI	CCNGG	1 cut(s)	1558
BmrI	ACTGGG	1 cut(s)	1202
BmsI	GCATC	6 cut(s)	358, 427, 1277, 1335, 1663, 1784
BmuI	ACTGGG	1 cut(s)	1202
BpmI	CTGGAG	1 cut(s)	1865
Bpu1102I	GCTNAGC	2 cut(s)	1867, 1908
BsaJI	CCNNGG	3 cut(s)	1557, 1698, 1914
Bsc4I	CCNNNNNNNGG	4 cut(s)	362, 647, 881, 1115
Bse1I	ACTGG	2 cut(s)	165, 1197
Bse21I	CCTNAGG	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	1558
BseDI	CCNNGG	3 cut(s)	1557, 1698, 1914
BseGI	GGATG	6 cut(s)	278, 829, 1063, 1297, 1654, 1951
BseLI	CCNNNNNNNGG	4 cut(s)	362, 647, 881, 1115
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	3 cut(s)	199, 1881, 1922
BseNI	ACTGG	2 cut(s)	165, 1197
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	255
BseYI	CCCAGC	5 cut(s)	646, 880, 1114, 1761, 1941
BshFI	GGCC	1 cut(s)	1936
BshNI	GGYRCC	2 cut(s)	250, 319
BsiHKAI	GWGCWC	2 cut(s)	874, 1515
BsiHKCI	CYCGRG	1 cut(s)	1699
BslI	CCNNNNNNNGG	4 cut(s)	362, 647, 881, 1115
BsmAI	GTCTC	2 cut(s)	56, 100
BsnI	GGCC	1 cut(s)	1936
BsoBI	CYCGRG	1 cut(s)	1699
Bsp1286I	GDGCHC	3 cut(s)	255, 874, 1515
Bsp143I	GATC	3 cut(s)	49, 195, 340
Bsp1720I	GCTNAGC	2 cut(s)	1867, 1908
BspACI	CCGC	2 cut(s)	1090, 1633
BspANI	GGCC	1 cut(s)	1936
BspCNI	CTCAG	3 cut(s)	198, 1880, 1921
BspLI	GGNNCC	6 cut(s)	163, 252, 321, 474, 801, 1696
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	2 cut(s)	190, 348
BspQI	GCTCTTC	2 cut(s)	855, 1278
BspT107I	GGYRCC	2 cut(s)	250, 319
BsrDI	GCAATG	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	165, 1197
BssECI	CCNNGG	3 cut(s)	1557, 1698, 1914
BssMI	GATC	3 cut(s)	49, 195, 340
BssT1I	CCWWGG	1 cut(s)	1914
Bst2UI	CCWGG	1 cut(s)	1558
Bst4CI	ACNGT	3 cut(s)	466, 1369, 1464
Bst6I	CTCTTC	6 cut(s)	54, 98, 619, 855, 1278, 1321
BstC8I	GCNNGC	3 cut(s)	80, 84, 1426
BstDEI	CTNAG	4 cut(s)	33, 185, 1867, 1908
BstF5I	GGATG	6 cut(s)	278, 829, 1063, 1297, 1654, 1951
BstHHI	GCGC	1 cut(s)	1340
BstKTI	GATC	3 cut(s)	52, 198, 343
BstMAI	GTCTC	2 cut(s)	56, 100
BstMBI	GATC	3 cut(s)	49, 195, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	1096, 1430
BstNI	CCWGG	1 cut(s)	1558
BstNSI	RCATGY	2 cut(s)	86, 1428
BstSCI	CCNGG	1 cut(s)	1556
BstSLI	GKGCMC	1 cut(s)	255
BstX2I	RGATCY	2 cut(s)	49, 340
BstYI	RGATCY	2 cut(s)	49, 340
Bsu36I	CCTNAGG	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	1936
BtsCI	GGATG	6 cut(s)	278, 829, 1063, 1297, 1654, 1951
BtsIMutI	CAGTG	2 cut(s)	471, 1469
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	3 cut(s)	80, 84, 1426
CaiI	CAGNNNCTG	1 cut(s)	716
CfoI	GCGC	1 cut(s)	1340
Cfr13I	GGNCC	1 cut(s)	162
Csp6I	GTAC	5 cut(s)	735, 827, 1004, 1200, 1404
CviQI	GTAC	5 cut(s)	735, 827, 1004, 1200, 1404
DdeI	CTNAG	4 cut(s)	33, 185, 1867, 1908
DpnI	GATC	3 cut(s)	51, 197, 342
DpnII	GATC	3 cut(s)	49, 195, 340
DraI	TTTAAA	1 cut(s)	1249
DraIII	CACNNNGTG	1 cut(s)	468
Eam1104I	CTCTTC	6 cut(s)	54, 98, 619, 855, 1278, 1321
EarI	CTCTTC	6 cut(s)	54, 98, 619, 855, 1278, 1321
EciI	GGCGGA	1 cut(s)	1648
Ecl136II	GAGCTC	1 cut(s)	1513
Eco130I	CCWWGG	1 cut(s)	1914
Eco24I	GRGCYC	1 cut(s)	1515
Eco32I	GATATC	1 cut(s)	1887
Eco47I	GGWCC	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	1513
Eco81I	CCTNAGG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	1699
EcoICRI	GAGCTC	1 cut(s)	1513
EcoRII	CCWGG	1 cut(s)	1556
EcoRV	GATATC	1 cut(s)	1887
EcoT14I	CCWWGG	1 cut(s)	1914
EcoT22I	ATGCAT	2 cut(s)	1430, 1535
EcoT38I	GRGCYC	1 cut(s)	1515
ErhI	CCWWGG	1 cut(s)	1914
FalI	AAGNNNNNCTT	2 cut(s)	1318, 1350
FokI	GGATG	6 cut(s)	265, 836, 1070, 1304, 1641, 1958
FriOI	GRGCYC	1 cut(s)	1515
GlaI	GCGC	1 cut(s)	1339
GsaI	CCCAGC	5 cut(s)	650, 884, 1118, 1765, 1945
GsuI	CTGGAG	1 cut(s)	1865
HaeIII	GGCC	1 cut(s)	1936
HhaI	GCGC	1 cut(s)	1340
Hin6I	GCGC	1 cut(s)	1338
HinP1I	GCGC	1 cut(s)	1338
HincII	GTYRAC	2 cut(s)	259, 1852
HindII	GTYRAC	2 cut(s)	259, 1852
HindIII	AAGCTT	1 cut(s)	331
HphI	GGTGA	5 cut(s)	377, 574, 1493, 1800, 1991
Hpy166II	GTNNAC	3 cut(s)	259, 1852, 1858
Hpy188III	TCNNGA	9 cut(s)	146, 455, 699, 857, 933, 1167, 1398, 1469, 1882
Hpy8I	GTNNAC	3 cut(s)	259, 1852, 1858
HpyAV	CCTTC	5 cut(s)	1466, 1553, 1580, 1691, 1897
HpyCH4III	ACNGT	3 cut(s)	466, 1369, 1464
HpyCH4IV	ACGT	4 cut(s)	90, 1402, 1598, 1854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1096, 1430
HpyF3I	CTNAG	4 cut(s)	33, 185, 1867, 1908
HpySE526I	ACGT	4 cut(s)	90, 1402, 1598, 1854
HspAI	GCGC	1 cut(s)	1338
Kzo9I	GATC	3 cut(s)	49, 195, 340
LguI	GCTCTTC	2 cut(s)	855, 1278
LmnI	GCTCC	3 cut(s)	422, 877, 1518
LweI	GCATC	6 cut(s)	358, 427, 1277, 1335, 1663, 1784
MaeII	ACGT	4 cut(s)	90, 1402, 1598, 1854
MaeIII	GTNAC	2 cut(s)	350, 562
MalI	GATC	3 cut(s)	51, 197, 342
MboI	GATC	3 cut(s)	49, 195, 340
MfeI	CAATTG	2 cut(s)	314, 1997
MflI	RGATCY	2 cut(s)	49, 340
MhlI	GDGCHC	3 cut(s)	255, 874, 1515
MlyI	GAGTC	7 cut(s)	272, 296, 593, 707, 956, 1175, 1799
MmeI	TCCRAC	4 cut(s)	452, 567, 601, 1303
Mph1103I	ATGCAT	2 cut(s)	1430, 1535
MseI	TTAA	8 cut(s)	225, 239, 398, 690, 813, 1047, 1248, 1520
MslI	CAYNNNNRTG	3 cut(s)	641, 1423, 1446
MspA1I	CMGCKG	1 cut(s)	1409
MspR9I	CCNGG	1 cut(s)	1558
MunI	CAATTG	2 cut(s)	314, 1997
MvaI	CCWGG	1 cut(s)	1558
MwoI	GCNNNNNNNGC	2 cut(s)	1096, 1430
NdeII	GATC	3 cut(s)	49, 195, 340
NlaIV	GGNNCC	6 cut(s)	163, 252, 321, 474, 801, 1696
NmuCI	GTSAC	2 cut(s)	350, 562
NsiI	ATGCAT	2 cut(s)	1430, 1535
NspI	RCATGY	2 cut(s)	86, 1428
PaeI	GCATGC	2 cut(s)	86, 1428
PciSI	GCTCTTC	2 cut(s)	855, 1278
PfeI	GAWTC	6 cut(s)	229, 524, 758, 992, 1232, 1673
PflFI	GACNNNGTC	1 cut(s)	1464
PleI	GAGTC	7 cut(s)	271, 295, 592, 707, 955, 1175, 1799
PpsI	GAGTC	7 cut(s)	271, 295, 592, 707, 955, 1175, 1799
Psp124BI	GAGCTC	1 cut(s)	1515
Psp1406I	AACGTT	2 cut(s)	90, 1598
Psp6I	CCWGG	1 cut(s)	1556
PspFI	CCCAGC	5 cut(s)	646, 880, 1114, 1761, 1941
PspGI	CCWGG	1 cut(s)	1556
PspN4I	GGNNCC	6 cut(s)	163, 252, 321, 474, 801, 1696
PspPI	GGNCC	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	2 cut(s)	49, 340
PsyI	GACNNNGTC	1 cut(s)	1464
PvuII	CAGCTG	1 cut(s)	1409
RsaI	GTAC	5 cut(s)	736, 828, 1005, 1201, 1405
RsaNI	GTAC	5 cut(s)	735, 827, 1004, 1200, 1404
RseI	CAYNNNNRTG	3 cut(s)	641, 1423, 1446
SacI	GAGCTC	1 cut(s)	1515
SapI	GCTCTTC	2 cut(s)	855, 1278
SaqAI	TTAA	8 cut(s)	225, 239, 398, 690, 813, 1047, 1248, 1520
Sau3AI	GATC	3 cut(s)	49, 195, 340
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	7 cut(s)	272, 296, 593, 707, 956, 1175, 1799
ScrFI	CCNGG	1 cut(s)	1558
SduI	GDGCHC	3 cut(s)	255, 874, 1515
SfaNI	GCATC	6 cut(s)	358, 427, 1277, 1335, 1663, 1784
SinI	GGWCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	3 cut(s)	641, 1423, 1446
SpeI	ACTAGT	1 cut(s)	431
SphI	GCATGC	2 cut(s)	86, 1428
SsiI	CCGC	2 cut(s)	1090, 1633
SspI	AATATT	1 cut(s)	1316
SstI	GAGCTC	1 cut(s)	1515
StyD4I	CCNGG	1 cut(s)	1556
StyI	CCWWGG	1 cut(s)	1914
TaaI	ACNGT	3 cut(s)	466, 1369, 1464
TaiI	ACGT	4 cut(s)	93, 1405, 1601, 1857
TaqI	TCGA	2 cut(s)	1552, 1893
TatI	WGTACW	3 cut(s)	734, 826, 1003
TfiI	GAWTC	6 cut(s)	229, 524, 758, 992, 1232, 1673
Tru1I	TTAA	8 cut(s)	225, 239, 398, 690, 813, 1047, 1248, 1520
Tru9I	TTAA	8 cut(s)	225, 239, 398, 690, 813, 1047, 1248, 1520
TscAI	CASTG	2 cut(s)	471, 1469
TseFI	GTSAC	2 cut(s)	350, 562
Tsp45I	GTSAC	2 cut(s)	350, 562
TspGWI	ACGGA	1 cut(s)	954
TspRI	CASTG	2 cut(s)	471, 1469
Tth111I	GACNNNGTC	1 cut(s)	1464
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	1 cut(s)	845
XceI	RCATGY	2 cut(s)	86, 1428
Zsp2I	ATGCAT	2 cut(s)	1430, 1535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.