Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006703

Physical Location & Seq

Genomic Coordinates Reverse (-)

26429610 .. 26431665

Gene Structure 2056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1171500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGACACTTCCATCTTATGAGTCAGATATTCACTTCATGAAACTTCATTCGACACCTGCTAGAAAGTTTATGGAACTTGAATTTAGCCCTTGTTTGCATGATTCTGAATCATCTTGCTGGTCAAAGAGATCAAGAGAGAGGATTTTATGTTCCGATTCTCCAACTAGTTATGCTTACAAGAACCATCTTCAGTACAGAGTATGGGAACCTGACCATGAATTATTAGAAGGTACTGCAATTTCATGCACTGAGAGTCATTCACATTCTCTTCTTCCATTCGAAGAATATGGGTTGGTGACGTCTGGCCATGCCAAAGAGACGGATGTATTCTGTCAGCCAAATGAATATTTGGTCGACAGAGAGCTATGTGTTCCTATGCTGGGTTGGGATTTTGACAGTACAGAAGAAGATAGAAGCTTATCTAACTTATCAACATATAGAACTGAACACCAATCCGCATCCTTTGCCAGTTATTACAACAATGAAGTTGTAAGGCGTTGTCTTGAAGACAAAGGCGATTTACAATCAGGTTTCCAGCAAATTCCGTTAACCTTGTCATCATGTATACCGAACTTTATTAATCTAGCTGAAGACTGCATTAATGACACTGCATATGAAGTTGGAAGCACCACATTATCTCTCCAAAACGACCATTGGTTTTCGAGCAAAATTATCAATGAGGGGTACTATCTTCCTAATACCGAATCTTTCCTTTCCTCTGGACTTGATTCTGATTTAGGATGGAACTACCTTCCGTTAAGTGGTTCCTCGAGAGAGCATGATTCATCAACTTGTCTAGCTCTACAATTTCCTGAACAGGAAAACTTATCTTCCCGCCTTCTTACTTACCATGATGATAAGTACGAAAGATGCTTAGATGACTCAAGTCATACAAGAAGTCTTACTCATTTCGTTGAAGATAATGTTAATGTCCATGAAGACAGCTCAGCCTTTTGCCTCCAAATTCCATTGGACAGAGAGAAGACATGGCCATTGCTGCTTTATAAGCCAAGCTGGGATGAAAGTAACGAAAGAGAGACAAACTTTGCTGATAGCGATGTCAATATTCTTGATAGTAAAGTAAGTTTTCGTCAATGGCTACATTACAATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

372

Amino Acids

42.83

Weight (kDa)

4.67

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20250 AT2G20250 AT2G20250
fragaria_vesca	FvH4_2g19950
malus_domestica	MD10G1171500.v1.1 MD10G1171600.v1.1
prunus_persica	Prupe.8G209900_v2.0.a1 Prupe.8G209900_v2.0.a1 Prupe.8G209900_v2.0.a1
pyrus_communis	pycom05g16880 pycom10g14790
rosa_chinensis	RchiOBHm_Chr6g0285611
rosa_laevigata	RLG00000012622
rosa_multiflora	Rmu_co8369127.1_g000001 Rmu_sc0001356.1_g000025 Rmu_sc0015474.1_g000001 Rmu_sc0017770.1_g000010
rosa_roxburghii	Rroxscaffold_7G00182890
rosa_rugosa	Rorug06G0176200
rosa_samantha	Rh6AG287500 Rh6BG288900 Rh6CG290000 Rh6CG290100 Rh6DG282700 Rh6DG282800
rosa_wichuraiana	Rw6G024720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1005
AarI	CACCTGC	1 cut(s)	64
AatII	GACGTC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	64
AccI	GTMKAC	2 cut(s)	354, 565
AciI	CCGC	2 cut(s)	456, 835
AcoI	YGGCCR	2 cut(s)	304, 989
AcsI	RAATTY	3 cut(s)	80, 540, 963
AcuI	CTGAAG	2 cut(s)	173, 609
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	5 cut(s)	194, 232, 400, 686, 863
AfiI	CCNNNNNNNGG	2 cut(s)	380, 761
AgsI	TTSAA	3 cut(s)	80, 506, 917
AhlI	ACTAGT	1 cut(s)	164
AloI	GAACNNNNNNTCC	2 cut(s)	133, 165
AluBI	AGCT	6 cut(s)	364, 417, 587, 800, 945, 1014
AluI	AGCT	6 cut(s)	364, 417, 587, 800, 945, 1014
Alw26I	GTCTC	2 cut(s)	311, 1031
Ama87I	CYCGRG	1 cut(s)	769
AoxI	GGCC	2 cut(s)	304, 989
ApeKI	GCWGC	1 cut(s)	997
ApoI	RAATTY	3 cut(s)	80, 540, 963
AseI	ATTAAT	2 cut(s)	579, 600
AsuHPI	GGTGA	1 cut(s)	307
AsuII	TTCGAA	1 cut(s)	279
AvaI	CYCGRG	1 cut(s)	769
BalI	TGGCCA	2 cut(s)	306, 991
BbsI	GAAGAC	4 cut(s)	513, 597, 945, 989
BbvI	GCAGC	1 cut(s)	984
BccI	CCATC	3 cut(s)	19, 192, 735
BcoDI	GTCTC	2 cut(s)	311, 1031
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	4 cut(s)	60, 165, 584, 797
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	1 cut(s)	998
BlpI	GCTNAGC	1 cut(s)	946
BlsI	GCNGC	1 cut(s)	999
BmeT110I	CYCGRG	1 cut(s)	769
BmiI	GGNNCC	2 cut(s)	207, 766
BmsI	GCATC	2 cut(s)	467, 860
BoxI	GACNNNNGTC	1 cut(s)	885
BpiI	GAAGAC	4 cut(s)	513, 597, 945, 989
Bpu1102I	GCTNAGC	1 cut(s)	946
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	868
BsaHI	GRCGYC	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 761
Bse1I	ACTGG	1 cut(s)	468
Bse3DI	GCAATG	1 cut(s)	992
BseGI	GGATG	4 cut(s)	328, 458, 746, 1024
BseLI	CCNNNNNNNGG	2 cut(s)	380, 761
BseMI	GCAATG	1 cut(s)	992
BseMII	CTCAG	2 cut(s)	240, 960
BseNI	ACTGG	1 cut(s)	468
BseXI	GCAGC	1 cut(s)	984
BseYI	CCCAGC	2 cut(s)	379, 1014
BshFI	GGCC	2 cut(s)	306, 991
BsiHKCI	CYCGRG	1 cut(s)	769
BslI	CCNNNNNNNGG	2 cut(s)	380, 761
BsmAI	GTCTC	2 cut(s)	311, 1031
BsmBI	CGTCTC	1 cut(s)	311
BsnI	GGCC	2 cut(s)	306, 991
BsoBI	CYCGRG	1 cut(s)	769
Bsp119I	TTCGAA	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	128
Bsp1720I	GCTNAGC	1 cut(s)	946
BspACI	CCGC	2 cut(s)	456, 835
BspANI	GGCC	2 cut(s)	306, 991
BspCNI	CTCAG	2 cut(s)	241, 959
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	207, 766
BspMI	ACCTGC	1 cut(s)	64
BspT104I	TTCGAA	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	992
BsrI	ACTGG	1 cut(s)	468
BssMI	GATC	1 cut(s)	128
BssNAI	GTATAC	1 cut(s)	566
BssNI	GRCGYC	1 cut(s)	299
Bst1107I	GTATAC	1 cut(s)	566
Bst4CI	ACNGT	1 cut(s)	398
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	249, 874, 946
BstF5I	GGATG	4 cut(s)	328, 458, 746, 1024
BstKTI	GATC	1 cut(s)	131
BstMAI	GTCTC	2 cut(s)	311, 1031
BstMBI	GATC	1 cut(s)	128
BstMWI	GCNNNNNNNGC	3 cut(s)	464, 997, 1006
BstPAI	GACNNNNGTC	1 cut(s)	885
BstV1I	GCAGC	1 cut(s)	984
BstV2I	GAAGAC	4 cut(s)	513, 597, 945, 989
BstZ17I	GTATAC	1 cut(s)	566
BsuRI	GGCC	2 cut(s)	306, 991
BtgZI	GCGATG	1 cut(s)	1071
BtsCI	GGATG	4 cut(s)	328, 458, 746, 1024
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	2 cut(s)	246, 606
BveI	ACCTGC	1 cut(s)	64
CciI	TCATGA	1 cut(s)	36
Csp6I	GTAC	5 cut(s)	193, 231, 399, 685, 862
CviQI	GTAC	5 cut(s)	193, 231, 399, 685, 862
DdeI	CTNAG	3 cut(s)	249, 874, 946
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
EaeI	YGGCCR	2 cut(s)	304, 989
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco57I	CTGAAG	2 cut(s)	173, 609
Eco88I	CYCGRG	1 cut(s)	769
Esp3I	CGTCTC	1 cut(s)	311
FauI	CCCGC	1 cut(s)	842
FauNDI	CATATG	1 cut(s)	613
FblI	GTMKAC	2 cut(s)	354, 565
Fnu4HI	GCNGC	1 cut(s)	998
FokI	GGATG	4 cut(s)	335, 445, 753, 1031
Fsp4HI	GCNGC	1 cut(s)	998
FspBI	CTAG	4 cut(s)	60, 165, 584, 797
GluI	GCNGC	1 cut(s)	998
GsaI	CCCAGC	2 cut(s)	383, 1018
HaeIII	GGCC	2 cut(s)	306, 991
Hin1I	GRCGYC	1 cut(s)	299
HincII	GTYRAC	2 cut(s)	355, 549
HindII	GTYRAC	2 cut(s)	355, 549
HindIII	AAGCTT	1 cut(s)	415
HinfI	GANTC	9 cut(s)	20, 101, 107, 155, 253, 704, 728, 782, 881
HpaI	GTTAAC	1 cut(s)	549
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	3 cut(s)	355, 549, 566
Hpy188I	TCNGA	4 cut(s)	25, 106, 154, 733
Hpy188III	TCNNGA	7 cut(s)	37, 132, 503, 720, 771, 812, 1070
Hpy8I	GTNNAC	3 cut(s)	355, 549, 566
HpyAV	CCTTC	3 cut(s)	221, 761, 848
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	5 cut(s)	97, 236, 246, 597, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	464, 997, 1006
HpyF3I	CTNAG	3 cut(s)	249, 874, 946
HpySE526I	ACGT	1 cut(s)	299
Hsp92I	GRCGYC	1 cut(s)	299
KspAI	GTTAAC	1 cut(s)	549
Kzo9I	GATC	1 cut(s)	128
Lsp1109I	GCAGC	1 cut(s)	984
LweI	GCATC	2 cut(s)	467, 860
MaeI	CTAG	4 cut(s)	60, 165, 584, 797
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	295, 1025
MalI	GATC	1 cut(s)	130
MboI	GATC	1 cut(s)	128
MlsI	TGGCCA	2 cut(s)	306, 991
MluCI	AATT	7 cut(s)	80, 218, 237, 540, 669, 806, 963
MluNI	TGGCCA	2 cut(s)	306, 991
MlyI	GAGTC	3 cut(s)	29, 262, 875
MmeI	TCCRAC	2 cut(s)	185, 601
MnlI	CCTC	5 cut(s)	132, 673, 727, 778, 968
Mox20I	TGGCCA	2 cut(s)	306, 991
MscI	TGGCCA	2 cut(s)	306, 991
MseI	TTAA	5 cut(s)	548, 579, 600, 758, 927
MslI	CAYNNNNRTG	1 cut(s)	1107
Msp20I	TGGCCA	2 cut(s)	306, 991
MwoI	GCNNNNNNNGC	3 cut(s)	464, 997, 1006
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	1 cut(s)	128
NlaIV	GGNNCC	2 cut(s)	207, 766
NmuCI	GTSAC	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	279
PaeR7I	CTCGAG	1 cut(s)	769
PagI	TCATGA	1 cut(s)	36
PaqCI	CACCTGC	1 cut(s)	64
PfeI	GAWTC	6 cut(s)	101, 107, 155, 704, 728, 782
PkrI	GCNGC	1 cut(s)	999
PleI	GAGTC	3 cut(s)	28, 261, 875
PpsI	GAGTC	3 cut(s)	28, 261, 875
PshAI	GACNNNNGTC	1 cut(s)	885
PshBI	ATTAAT	2 cut(s)	579, 600
PsiI	TTATAA	1 cut(s)	1005
PspFI	CCCAGC	2 cut(s)	379, 1014
PspN4I	GGNNCC	2 cut(s)	207, 766
RsaI	GTAC	5 cut(s)	194, 232, 400, 686, 863
RsaNI	GTAC	5 cut(s)	193, 231, 399, 685, 862
RseI	CAYNNNNRTG	1 cut(s)	1107
SalI	GTCGAC	1 cut(s)	353
SaqAI	TTAA	5 cut(s)	548, 579, 600, 758, 927
SatI	GCNGC	1 cut(s)	998
Sau3AI	GATC	1 cut(s)	128
SchI	GAGTC	3 cut(s)	29, 262, 875
SfaNI	GCATC	2 cut(s)	467, 860
Sfr274I	CTCGAG	1 cut(s)	769
SfuI	TTCGAA	1 cut(s)	279
SlaI	CTCGAG	1 cut(s)	769
SmiMI	CAYNNNNRTG	1 cut(s)	1107
SmlI	CTYRAG	2 cut(s)	769, 883
SmoI	CTYRAG	2 cut(s)	769, 883
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	7 cut(s)	80, 218, 237, 540, 669, 806, 963
SsiI	CCGC	2 cut(s)	456, 835
SspI	AATATT	2 cut(s)	347, 1066
SspMI	CTAG	4 cut(s)	60, 165, 584, 797
TaaI	ACNGT	1 cut(s)	398
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	5 cut(s)	50, 279, 354, 662, 770
TasI	AATT	7 cut(s)	80, 218, 237, 540, 669, 806, 963
TatI	WGTACW	2 cut(s)	192, 398
TfiI	GAWTC	6 cut(s)	101, 107, 155, 704, 728, 782
Tru1I	TTAA	5 cut(s)	548, 579, 600, 758, 927
Tru9I	TTAA	5 cut(s)	548, 579, 600, 758, 927
TscAI	CASTG	2 cut(s)	253, 613
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	1 cut(s)	997
Tsp45I	GTSAC	1 cut(s)	295
TspGWI	ACGGA	3 cut(s)	335, 534, 744
TspRI	CASTG	2 cut(s)	253, 613
VspI	ATTAAT	2 cut(s)	579, 600
XapI	RAATTY	3 cut(s)	80, 540, 963
XhoI	CTCGAG	1 cut(s)	769
XmiI	GTMKAC	2 cut(s)	354, 565
XspI	CTAG	4 cut(s)	60, 165, 584, 797
ZraI	GACGTC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.