Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010941

Physical Location & Seq

Genomic Coordinates Forward (+)

8736734 .. 8737767

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGATGACGTCAGCAGCTACCGGATTTATTCTCACGGCCAACGTCCCGGCGGCAATAGGCGGTGGTTCTTCAAAGAGCACCACCATTGTGTCTTTCTTGCCGATGAGAAGCTTCGGTTCAAGGCTAGTAGTCAGAGCGGCGGAAGATACACCTCCGGCAACCGCCTCGTCGGATAGTTCTTCCACCACCGCTGCTGCTGCTCCGGCGAAAGTTCCGGCCGCTAAGGCTAAACCTCCTCCAATTGGCCCAAAGAGAGGATCCAAGGTCAAGATTCTAAGGAAAGAATCATACTGGTACAAGAACGTTGGATCAGTTGTGGCCGTTGATCAGGACCCGAAGACCCGATATCCGGTTGTGGTCCGGTTCGCCAAGGTGAATTACGCGAATATATCGACCAACAACTACGCATTGGACGAGGTGGAAGAAGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0010033 GO:0010287 GO:0016020 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PsaE

Protein Analysis

145

Amino Acids

15.19

Weight (kDa)

9.94

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSI_PsaE	PF02427	85 - 144	2e-30	Photosystem I reaction centre subunit IV / PsaE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20260 AT4G28750
fragaria_vesca	FvH4_2g19960 FvH4_2g19960
malus_domestica	MD05G1183900.v1.1 MD10G1171800.v1.1
prunus_persica	Prupe.8G210000_v2.0.a1 Prupe.8G210000_v2.0.a1
pyrus_communis	pycom05g16890 pycom10g14830
rosa_chinensis	RchiOBHm_Chr6g0285621
rosa_laevigata	RLG00000012621
rosa_multiflora	Rmu_sc0001356.1_g000024
rosa_roxburghii	Rroxscaffold_7G00182880
rosa_rugosa	Rorug06G0176200
rosa_samantha	Rh6AG287600 Rh6BG289000 Rh6CG290200 Rh6DG282900
rosa_wichuraiana	Rw6G024730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	14
AccBSI	CCGCTC	1 cut(s)	140
AccII	CGCG	1 cut(s)	386
AciI	CCGC	7 cut(s)	53, 63, 140, 143, 165, 192, 222
AclI	AACGTT	1 cut(s)	306
AclWI	GGATC	3 cut(s)	255, 268, 319
AcoI	YGGCCR	3 cut(s)	39, 219, 321
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	3 cut(s)	245, 257, 352
AgsI	TTSAA	2 cut(s)	75, 123
AleI	CACNNNNGTG	1 cut(s)	89
AluBI	AGCT	2 cut(s)	20, 114
AluI	AGCT	2 cut(s)	20, 114
Alw21I	GWGCWC	1 cut(s)	83
AlwI	GGATC	3 cut(s)	255, 268, 319
AoxI	GGCC	4 cut(s)	39, 219, 247, 321
ApeKI	GCWGC	4 cut(s)	17, 194, 197, 200
AspS9I	GGNCC	3 cut(s)	248, 334, 361
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	388
AvaII	GGWCC	2 cut(s)	334, 361
BamHI	GGATCC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	4 cut(s)	29, 181, 184, 187
BceAI	ACGGC	2 cut(s)	54, 308
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	50
BfaI	CTAG	1 cut(s)	128
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	7 cut(s)	18, 54, 141, 195, 198, 201, 222
BlsI	GCNGC	7 cut(s)	19, 55, 142, 196, 199, 202, 223
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	2 cut(s)	334, 361
BmgT120I	GGNCC	3 cut(s)	248, 334, 361
BmiI	GGNNCC	2 cut(s)	262, 336
BmrFI	CCNGG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	264, 372
BsaWI	WCCGGW	3 cut(s)	23, 352, 363
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 257, 352
Bse1I	ACTGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	264, 372
BseLI	CCNNNNNNNGG	3 cut(s)	245, 257, 352
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	228
BseX3I	CGGCCG	1 cut(s)	219
BseXI	GCAGC	4 cut(s)	29, 181, 184, 187
Bsh1236I	CGCG	1 cut(s)	386
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	4 cut(s)	41, 221, 249, 323
BsiEI	CGRYCG	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	7 cut(s)	24, 50, 158, 206, 218, 353, 364
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	3 cut(s)	245, 257, 352
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	4 cut(s)	41, 221, 249, 323
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	260, 311, 328
BspACI	CCGC	7 cut(s)	53, 63, 140, 143, 165, 192, 222
BspANI	GGCC	4 cut(s)	41, 221, 249, 323
BspFNI	CGCG	1 cut(s)	386
BspLI	GGNNCC	2 cut(s)	262, 336
BspPI	GGATC	3 cut(s)	255, 268, 319
BsrBI	CCGCTC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	2 cut(s)	264, 372
BssMI	GATC	3 cut(s)	260, 311, 328
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	2 cut(s)	264, 372
BstACI	GRCGYC	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	225, 278
BstFNI	CGCG	1 cut(s)	386
BstKTI	GATC	3 cut(s)	263, 314, 331
BstMBI	GATC	3 cut(s)	260, 311, 328
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 206, 227
BstSCI	CCNGG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	4 cut(s)	29, 181, 184, 187
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BstZI	CGGCCG	1 cut(s)	219
BsuRI	GGCC	4 cut(s)	41, 221, 249, 323
BtgZI	GCGATG	1 cut(s)	20
Cfr13I	GGNCC	3 cut(s)	248, 334, 361
Csp6I	GTAC	1 cut(s)	298
CviJI	RGCY	8 cut(s)	20, 41, 114, 127, 221, 230, 249, 323
CviKI_1	RGCY	8 cut(s)	20, 41, 114, 127, 221, 230, 249, 323
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	225, 278
DpnI	GATC	3 cut(s)	262, 313, 330
DpnII	GATC	3 cut(s)	260, 311, 328
EaeI	YGGCCR	3 cut(s)	39, 219, 321
EagI	CGGCCG	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	158
EclXI	CGGCCG	1 cut(s)	219
Eco130I	CCWWGG	2 cut(s)	264, 372
Eco32I	GATATC	1 cut(s)	350
Eco47I	GGWCC	2 cut(s)	334, 361
Eco52I	CGGCCG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRV	GATATC	1 cut(s)	350
EcoT14I	CCWWGG	2 cut(s)	264, 372
ErhI	CCWWGG	2 cut(s)	264, 372
FaiI	YATR	2 cut(s)	292, 392
FaqI	GGGAC	1 cut(s)	32
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	7 cut(s)	18, 54, 141, 195, 198, 201, 222
Fsp4HI	GCNGC	7 cut(s)	18, 54, 141, 195, 198, 201, 222
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	7 cut(s)	18, 54, 141, 195, 198, 201, 222
HaeIII	GGCC	4 cut(s)	41, 221, 249, 323
HapII	CCGG	7 cut(s)	24, 50, 158, 206, 218, 353, 364
Hin1I	GRCGYC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	2 cut(s)	274, 287
HpaII	CCGG	7 cut(s)	24, 50, 158, 206, 218, 353, 364
HphI	GGTGA	1 cut(s)	388
Hpy188I	TCNGA	2 cut(s)	137, 175
Hpy188III	TCNNGA	2 cut(s)	271, 332
Hpy99I	CGWCG	1 cut(s)	175
HpyCH4IV	ACGT	3 cut(s)	11, 45, 306
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 206, 227
HpyF3I	CTNAG	2 cut(s)	225, 278
HpySE526I	ACGT	3 cut(s)	11, 45, 306
Hsp92I	GRCGYC	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	260, 311, 328
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	9 cut(s)	37, 63, 171, 219, 231, 280, 317, 366, 377
Lsp1109I	GCAGC	4 cut(s)	29, 181, 184, 187
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	3 cut(s)	11, 45, 306
MalI	GATC	3 cut(s)	262, 313, 330
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	3 cut(s)	260, 311, 328
MboII	GAAGA	5 cut(s)	63, 158, 174, 352, 437
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	2 cut(s)	243, 379
MmeI	TCCRAC	2 cut(s)	153, 289
MnlI	CCTC	6 cut(s)	165, 178, 246, 249, 251, 412
MslI	CAYNNNNRTG	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	7 cut(s)	24, 50, 158, 206, 218, 353, 364
MspR9I	CCNGG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	243
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	3 cut(s)	200, 206, 227
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	3 cut(s)	260, 311, 328
NlaIV	GGNNCC	2 cut(s)	262, 336
OliI	CACNNNNGTG	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	274, 287
PkrI	GCNGC	7 cut(s)	19, 55, 142, 196, 199, 202, 223
PpuMI	RGGWCCY	1 cut(s)	334
Psp1406I	AACGTT	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	262, 336
PspPI	GGNCC	3 cut(s)	248, 334, 361
PspPPI	RGGWCCY	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	89
SatI	GCNGC	7 cut(s)	18, 54, 141, 195, 198, 201, 222
Sau3AI	GATC	3 cut(s)	260, 311, 328
Sau96I	GGNCC	3 cut(s)	248, 334, 361
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	83
SinI	GGWCC	2 cut(s)	334, 361
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	243, 379
SsiI	CCGC	7 cut(s)	53, 63, 140, 143, 165, 192, 222
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	2 cut(s)	264, 372
TaiI	ACGT	3 cut(s)	14, 48, 309
TaqI	TCGA	1 cut(s)	395
TasI	AATT	2 cut(s)	243, 379
TauI	GCSGC	3 cut(s)	56, 143, 224
TfiI	GAWTC	2 cut(s)	274, 287
TseI	GCWGC	4 cut(s)	17, 194, 197, 200
VpaK11BI	GGWCC	2 cut(s)	334, 361
XspI	CTAG	1 cut(s)	128
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.