Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010941

Physical Location & Seq

Genomic Coordinates Reverse (-)

14202758 .. 14204061

Gene Structure 1304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGATGACGACAGCATCTACGGTATTTGTTCTACCGGCCAATGTCACCTCGGTCGCCGGCGCTTCGTCGTCCAGGAGCTCCGTGTCTTTCTTGCCGATGAGAAACGCCGGTTCTAGGCTCGTAGTCAGGGCAGCCGAAGATCCTGCTCCGGCTTCCTCTTCTTCAAAAGATTCTCCGGCAGCTGCCGCTGCTCCGGATGGAGCTACTGCCACCAAACCCAAGCCACCACCGATTGGTCCTAAGAGAGGGTCTAAGGTCAAGATTCTAAGGAGAGAATCCTATTGGTTCAAGAACGTTGGATCAGTTGTTGCCGTTGATCAGGACCCTAAGACTCGATACCCGGTTGTGGTCCGGTTCGCAAAAGTCAATTACGCCAACATATCGACCAACAACTATGCATTGGATGAGGTCGAAGAAGTTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0010033 GO:0010287 GO:0016020 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PsaE

Protein Analysis

143

Amino Acids

14.97

Weight (kDa)

9.92

Isoelectric Point (pI)

55.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSI_PsaE	PF02427	82 - 141	6.7e-30	Photosystem I reaction centre subunit IV / PsaE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20260 AT4G28750
fragaria_vesca	FvH4_2g19960 FvH4_2g19960
malus_domestica	MD05G1183900.v1.1 MD10G1171800.v1.1
prunus_persica	Prupe.8G210000_v2.0.a1 Prupe.8G210000_v2.0.a1
pyrus_communis	pycom05g16890 pycom10g14830
rosa_chinensis	RchiOBHm_Chr6g0285621
rosa_laevigata	RLG00000012621
rosa_multiflora	Rmu_sc0001356.1_g000024
rosa_roxburghii	Rroxscaffold_7G00182880
rosa_rugosa	Rorug06G0176200
rosa_samantha	Rh6AG287600 Rh6BG289000 Rh6CG290200 Rh6DG282900
rosa_wichuraiana	Rw6G024730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	236
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	1 cut(s)	189
AclI	AACGTT	1 cut(s)	297
AclWI	GGATC	2 cut(s)	137, 310
AcoI	YGGCCR	1 cut(s)	39
AfiI	CCNNNNNNNGG	4 cut(s)	117, 236, 248, 349
AgsI	TTSAA	2 cut(s)	168, 292
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	4 cut(s)	81, 185, 206, 428
AluI	AGCT	4 cut(s)	81, 185, 206, 428
Alw21I	GWGCWC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	137, 310
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	5 cut(s)	134, 182, 185, 191, 425
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	3 cut(s)	239, 325, 352
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	3 cut(s)	239, 325, 352
BanII	GRGCYC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	4 cut(s)	146, 172, 178, 194
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	299
BcgI	CGANNNNNNTGC	3 cut(s)	128, 162, 404
BciT130I	CCWGG	1 cut(s)	76
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	344
BfaI	CTAG	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	66
BisI	GCNGC	6 cut(s)	135, 183, 186, 189, 192, 426
BlsI	GCNGC	6 cut(s)	136, 184, 187, 190, 193, 427
Bme1390I	CCNGG	2 cut(s)	76, 344
Bme18I	GGWCC	3 cut(s)	239, 325, 352
BmgT120I	GGNCC	3 cut(s)	239, 325, 352
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	2 cut(s)	76, 344
BmsI	GCATC	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	2 cut(s)	196, 354
Bsc4I	CCNNNNNNNGG	4 cut(s)	117, 236, 248, 349
Bse118I	RCCGGY	3 cut(s)	37, 59, 110
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	2 cut(s)	205, 412
BseLI	CCNNNNNNNGG	4 cut(s)	117, 236, 248, 349
BseXI	GCAGC	4 cut(s)	146, 172, 178, 194
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	41
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	8 cut(s)	38, 60, 111, 152, 179, 197, 344, 355
BslI	CCNNNNNNNGG	4 cut(s)	117, 236, 248, 349
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	142, 302, 319
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	41
BspEI	TCCGGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	2 cut(s)	137, 310
BsrFI	RCCGGY	3 cut(s)	37, 59, 110
BssAI	RCCGGY	3 cut(s)	37, 59, 110
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	3 cut(s)	142, 302, 319
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	4 cut(s)	243, 255, 269, 330
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	205, 412
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	3 cut(s)	145, 305, 322
BstMBI	GATC	3 cut(s)	142, 302, 319
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 191
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	2 cut(s)	74, 342
BstV1I	GCAGC	4 cut(s)	146, 172, 178, 194
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	41
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	205, 412
Cac8I	GCNNGC	1 cut(s)	61
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	3 cut(s)	37, 59, 110
Cfr13I	GGNCC	3 cut(s)	239, 325, 352
CviJI	RGCY	9 cut(s)	41, 81, 121, 137, 155, 185, 206, 226, 428
CviKI_1	RGCY	9 cut(s)	41, 81, 121, 137, 155, 185, 206, 226, 428
DdeI	CTNAG	4 cut(s)	243, 255, 269, 330
DpnI	GATC	3 cut(s)	144, 304, 321
DpnII	GATC	3 cut(s)	142, 302, 319
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	83
Eco47I	GGWCC	3 cut(s)	239, 325, 352
Eco53kI	GAGCTC	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	81
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	74
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	83
FaiI	YATR	2 cut(s)	383, 399
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	6 cut(s)	135, 183, 186, 189, 192, 426
FokI	GGATG	2 cut(s)	212, 419
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	6 cut(s)	135, 183, 186, 189, 192, 426
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	6 cut(s)	135, 183, 186, 189, 192, 426
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	8 cut(s)	38, 60, 111, 152, 179, 197, 344, 355
HhaI	GCGC	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HinfI	GANTC	4 cut(s)	173, 265, 278, 334
HpaII	CCGG	8 cut(s)	38, 60, 111, 152, 179, 197, 344, 355
HphI	GGTGA	1 cut(s)	40
Hpy188III	TCNNGA	4 cut(s)	197, 262, 292, 323
Hpy99I	CGWCG	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	2 cut(s)	401, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 191
HpyF3I	CTNAG	4 cut(s)	243, 255, 269, 330
HpySE526I	ACGT	1 cut(s)	297
HspAI	GCGC	1 cut(s)	63
Kpn2I	TCCGGA	1 cut(s)	196
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	142, 302, 319
LmnI	GCTCC	5 cut(s)	78, 86, 154, 199, 203
Lsp1109I	GCAGC	4 cut(s)	146, 172, 178, 194
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	3 cut(s)	144, 304, 321
MboI	GATC	3 cut(s)	142, 302, 319
MboII	GAAGA	4 cut(s)	152, 153, 156, 428
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	1 cut(s)	370
MlyI	GAGTC	1 cut(s)	328
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	4 cut(s)	61, 169, 242, 403
Mph1103I	ATGCAT	1 cut(s)	403
MreI	CGCCGGCG	1 cut(s)	59
MroI	TCCGGA	1 cut(s)	196
MroNI	GCCGGC	1 cut(s)	59
MseI	TTAA	1 cut(s)	430
MspA1I	CMGCKG	2 cut(s)	185, 191
MspI	CCGG	8 cut(s)	38, 60, 111, 152, 179, 197, 344, 355
MspR9I	CCNGG	2 cut(s)	76, 344
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	2 cut(s)	188, 191
NaeI	GCCGGC	1 cut(s)	61
NciI	CCSGG	1 cut(s)	344
NdeII	GATC	3 cut(s)	142, 302, 319
NgoMIV	GCCGGC	1 cut(s)	59
NlaIV	GGNNCC	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	403
PdiI	GCCGGC	1 cut(s)	61
PfeI	GAWTC	3 cut(s)	173, 265, 278
PflMI	CCANNNNNTGG	1 cut(s)	236
PfoI	TCCNGGA	1 cut(s)	74
PkrI	GCNGC	6 cut(s)	136, 184, 187, 190, 193, 427
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	325
Psp124BI	GAGCTC	1 cut(s)	83
Psp1406I	AACGTT	1 cut(s)	297
Psp5II	RGGWCCY	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	3 cut(s)	239, 325, 352
PspPPI	RGGWCCY	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	430
SatI	GCNGC	6 cut(s)	135, 183, 186, 189, 192, 426
Sau3AI	GATC	3 cut(s)	142, 302, 319
Sau96I	GGNCC	3 cut(s)	239, 325, 352
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	2 cut(s)	76, 344
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	8 cut(s)	53, 83, 187, 208, 261, 300, 414, 430
SfaNI	GCATC	1 cut(s)	26
SgrAI	CRCCGGYG	1 cut(s)	59
SinI	GGWCC	3 cut(s)	239, 325, 352
Sse9I	AATT	1 cut(s)	370
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	83
StyD4I	CCNGG	2 cut(s)	74, 342
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	3 cut(s)	337, 386, 414
TaqII	GACCGA	1 cut(s)	43
TasI	AATT	1 cut(s)	370
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	3 cut(s)	173, 265, 278
Tru1I	TTAA	1 cut(s)	430
Tru9I	TTAA	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	5 cut(s)	134, 182, 185, 191, 425
Tsp45I	GTSAC	1 cut(s)	46
TspGWI	ACGGA	1 cut(s)	73
Van91I	CCANNNNNTGG	1 cut(s)	236
VpaK11BI	GGWCC	3 cut(s)	239, 325, 352
XagI	CCTNNNNNAGG	1 cut(s)	246
XspI	CTAG	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.