Rh6AG287600

Photosystem I reaction center subunit IV

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010941
Physical Location & Seq
Forward (+)
48393633 .. 48395473
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG287600.1

Sequence Viewer

Length: 339 bp
ATGGCTAGCTGCAGCATGGCATCAGCTGCCTCAGGCTTTGTGGTCACGCCAAATGTTGCAACCAACTCAGGCTCCGCTACTAGCCGGAGTAGCATCTTGTTTTTCTCTTCCAAGAGCAACACCAACGCCAGAACTAACAGTGGCAGGTTTGTGATCAGGGCAGCCGAGGAAGGAGCAGCGCCGCCCGCTGCTGCCCCCAAGGCCCCCGAAGGTGCAGCTGCCACAAAGCCTAAGCCACCACCAATTGGACCCAAGAGAGGCACCAAGGTGAAGATTCTTAGGAGGGAGTCCTACTGGTTCAAAGGCATTGGCTCTGTTGTAGCTGTGGATCAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PSI_PsaE

Protein Analysis

112

Amino Acids

11.45

Weight (kDa)

10.75

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSI_PsaE PF02427 85 - 111 3.4e-11 Photosystem I reaction centre subunit IV / PsaE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20260 AT4G28750
fragaria_vesca FvH4_2g19960 FvH4_2g19960
malus_domestica MD05G1183900.v1.1 MD10G1171800.v1.1
prunus_persica Prupe.8G210000_v2.0.a1 Prupe.8G210000_v2.0.a1
pyrus_communis pycom05g16890 pycom10g14830
rosa_chinensis RchiOBHm_Chr6g0285621
rosa_laevigata RLG00000012621
rosa_multiflora Rmu_sc0001356.1_g000024
rosa_roxburghii Rroxscaffold_7G00182880
rosa_rugosa Rorug06G0176200
rosa_samantha Rh6AG287600 Rh6BG289000 Rh6CG290200 Rh6DG282900
rosa_wichuraiana Rw6G024730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 260
AccB7I CCANNNNNTGG 1 cut(s) 245
AciI CCGC 3 cut(s) 75, 182, 186
AclWI GGATC 1 cut(s) 336
AfiI CCNNNNNNNGG 2 cut(s) 245, 257
AgsI TTSAA 1 cut(s) 301
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 4 cut(s) 9, 26, 218, 323
AluI AGCT 4 cut(s) 9, 26, 218, 323
AlwI GGATC 1 cut(s) 336
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 9 cut(s) 9, 12, 26, 161, 176, 188, 191, 215, 218
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 202, 248
AsuHPI GGTGA 1 cut(s) 280
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 248
AxyI CCTNAGG 1 cut(s) 31
BanI GGYRCC 1 cut(s) 260
BbvI GCAGC 8 cut(s) 13, 24, 173, 175, 178, 188, 205, 227
BclI TGATCA 1 cut(s) 153
BfaI CTAG 2 cut(s) 6, 81
BfmI CTRYAG 1 cut(s) 10
BfoI RGCGCY 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 135
BglI GCCNNNNNGGC 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 2 cut(s) 202, 248
BmiI GGNNCC 4 cut(s) 73, 204, 250, 262
BmsI GCATC 2 cut(s) 29, 102
BmtI GCTAGC 1 cut(s) 9
Bpu10I CCTNAGC 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 165, 198, 264
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 257
Bse1I ACTGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 31
BseDI CCNNGG 3 cut(s) 165, 198, 264
BseLI CCNNNNNNNGG 2 cut(s) 245, 257
BseMII CTCAG 2 cut(s) 45, 81
BseNI ACTGG 1 cut(s) 299
BseXI GCAGC 8 cut(s) 13, 24, 173, 175, 178, 188, 205, 227
BsgI GTGCAG 1 cut(s) 234
BshFI GGCC 1 cut(s) 203
BshNI GGYRCC 1 cut(s) 260
BsiSI CCGG 1 cut(s) 85
BslI CCNNNNNNNGG 2 cut(s) 245, 257
BsnI GGCC 1 cut(s) 203
Bsp143I GATC 2 cut(s) 153, 328
BspACI CCGC 3 cut(s) 75, 182, 186
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 2 cut(s) 44, 80
BspLI GGNNCC 4 cut(s) 73, 204, 250, 262
BspMAI CTGCAG 1 cut(s) 14
BspMI ACCTGC 1 cut(s) 135
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 165, 198, 264
BssMI GATC 2 cut(s) 153, 328
BssT1I CCWWGG 2 cut(s) 198, 264
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 112
BstAPI GCANNNNNTGC 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 7, 186
BstDEI CTNAG 4 cut(s) 31, 67, 231, 278
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 2 cut(s) 156, 331
BstMBI GATC 2 cut(s) 153, 328
BstMWI GCNNNNNNNGC 4 cut(s) 26, 90, 185, 200
BstSFI CTRYAG 1 cut(s) 10
BstV1I GCAGC 8 cut(s) 13, 24, 173, 175, 178, 188, 205, 227
Bsu36I CCTNAGG 1 cut(s) 31
BsuRI GGCC 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 145
BveI ACCTGC 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 7, 186
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 202, 248
CviAII CATG 1 cut(s) 16
DdeI CTNAG 4 cut(s) 31, 67, 231, 278
DpnI GATC 2 cut(s) 155, 330
DpnII GATC 2 cut(s) 153, 328
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco130I CCWWGG 2 cut(s) 198, 264
Eco47I GGWCC 1 cut(s) 248
Eco81I CCTNAGG 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 202
EcoT14I CCWWGG 2 cut(s) 198, 264
ErhI CCWWGG 2 cut(s) 198, 264
FaeI CATG 1 cut(s) 19
FaiI YATR 2 cut(s) 17, 337
FatI CATG 1 cut(s) 15
FauI CCCGC 1 cut(s) 193
FbaI TGATCA 1 cut(s) 153
FspBI CTAG 2 cut(s) 6, 81
GlaI GCGC 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 85
HhaI GCGC 1 cut(s) 181
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 2 cut(s) 274, 287
HpaII CCGG 1 cut(s) 85
HphI GGTGA 1 cut(s) 280
HpyAV CCTTC 2 cut(s) 164, 203
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 3 cut(s) 12, 59, 215
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 90, 185, 200
HpyF3I CTNAG 4 cut(s) 31, 67, 231, 278
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 153
Kzo9I GATC 2 cut(s) 153, 328
LmnI GCTCC 2 cut(s) 77, 173
LpnPI CCDG 8 cut(s) 18, 54, 98, 130, 142, 142, 280, 317
Lsp1109I GCAGC 8 cut(s) 13, 24, 173, 175, 178, 188, 205, 227
LweI GCATC 2 cut(s) 29, 102
MaeI CTAG 2 cut(s) 6, 81
MaeIII GTNAC 1 cut(s) 43
MalI GATC 2 cut(s) 155, 330
MboI GATC 2 cut(s) 153, 328
MboII GAAGA 2 cut(s) 99, 283
MfeI CAATTG 1 cut(s) 243
MluCI AATT 1 cut(s) 243
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 4 cut(s) 40, 160, 251, 276
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 3 cut(s) 26, 188, 218
MspI CCGG 1 cut(s) 85
MunI CAATTG 1 cut(s) 243
MwoI GCNNNNNNNGC 4 cut(s) 26, 90, 185, 200
NdeII GATC 2 cut(s) 153, 328
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 4 cut(s) 73, 204, 250, 262
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 43
OliI CACNNNNGTG 1 cut(s) 266
PfeI GAWTC 1 cut(s) 274
PflMI CCANNNNNTGG 1 cut(s) 245
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PspN4I GGNNCC 4 cut(s) 73, 204, 250, 262
PspPI GGNCC 2 cut(s) 202, 248
PstI CTGCAG 1 cut(s) 14
PvuII CAGCTG 2 cut(s) 26, 218
RseI CAYNNNNRTG 1 cut(s) 266
Sau3AI GATC 2 cut(s) 153, 328
Sau96I GGNCC 2 cut(s) 202, 248
SchI GAGTC 1 cut(s) 296
SetI ASST 8 cut(s) 11, 28, 149, 214, 220, 270, 325, 336
SfaNI GCATC 2 cut(s) 29, 102
SfcI CTRYAG 1 cut(s) 10
SinI GGWCC 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 1 cut(s) 243
SsiI CCGC 3 cut(s) 75, 182, 186
SspMI CTAG 2 cut(s) 6, 81
StyI CCWWGG 2 cut(s) 198, 264
TaaI ACNGT 1 cut(s) 140
TasI AATT 1 cut(s) 243
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 1 cut(s) 274
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 9 cut(s) 9, 12, 26, 161, 176, 188, 191, 215, 218
Tsp45I GTSAC 1 cut(s) 43
TspRI CASTG 1 cut(s) 145
Van91I CCANNNNNTGG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 248
XspI CTAG 2 cut(s) 6, 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.