Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010941

Physical Location & Seq

Genomic Coordinates Forward (+)

19488172 .. 19489534

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G210000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTATGGCTAGCTGTGGCATGGCATCAGCTGCCTCAGGCTTTGTTGTGGCACCAAATGTTGCAGCAGCCAACAACACAGGCTCTGCTTCCAGCAGAAGTAGCATGTTGTTTTTCTCTTCAAAGCCCAACACCAACACCAGAAACAATGCCAGGTTTGTGATCAGGGCAGCTGATGAAGCAGCTGCTGCCCCACCAGCAGCCACCAAGGAAGCACCAGAAGGGGCAGCTGCTCCTAAACCTAAGCCACCTCCAATTGGACCCAAGAGAGGCACCAAGGTGAAGATTCTTAGGAGGGAGTCCTACTGGTTCAAAGGCATTGGATCTGTTGTAGCTGTGGATCAGGACCCCAACACCCGTTACCCAGTCGTCGTTCGATTCAACAAAGTTAACTATGCCAATGTGTCCACAAATAACTATGCTTTGGACGAGATTGAAGAAGTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PSI_PsaE

Protein Analysis

150

Amino Acids

15.73

Weight (kDa)

9.88

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20260 AT4G28750
fragaria_vesca	FvH4_2g19960 FvH4_2g19960
malus_domestica	MD05G1183900.v1.1 MD10G1171800.v1.1
prunus_persica	Prupe.8G210000_v2.0.a1 Prupe.8G210000_v2.0.a1
pyrus_communis	pycom05g16890 pycom10g14830
rosa_chinensis	RchiOBHm_Chr6g0285621
rosa_laevigata	RLG00000012621
rosa_multiflora	Rmu_sc0001356.1_g000024
rosa_roxburghii	Rroxscaffold_7G00182880
rosa_rugosa	Rorug06G0176200
rosa_samantha	Rh6AG287600 Rh6BG289000 Rh6CG290200 Rh6DG282900
rosa_wichuraiana	Rw6G024730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	52, 272
AclWI	GGATC	2 cut(s)	331, 348
AfiI	CCNNNNNNNGG	2 cut(s)	257, 269
AgsI	TTSAA	4 cut(s)	123, 313, 382, 437
AjnI	CCWGG	1 cut(s)	152
AleI	CACNNNNGTG	1 cut(s)	278
AluBI	AGCT	6 cut(s)	15, 32, 173, 185, 230, 335
AluI	AGCT	6 cut(s)	15, 32, 173, 185, 230, 335
AlwI	GGATC	2 cut(s)	331, 348
AlwNI	CAGNNNCTG	2 cut(s)	86, 188
AspS9I	GGNCC	2 cut(s)	260, 346
AsuHPI	GGTGA	1 cut(s)	292
AsuNHI	GCTAGC	1 cut(s)	11
AvaII	GGWCC	2 cut(s)	260, 346
AxyI	CCTNAGG	1 cut(s)	37
BanI	GGYRCC	2 cut(s)	52, 272
BciT130I	CCWGG	1 cut(s)	154
BclI	TGATCA	1 cut(s)	162
BfaI	CTAG	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	2 cut(s)	260, 346
BmgT120I	GGNCC	2 cut(s)	260, 346
BmiI	GGNNCC	4 cut(s)	54, 262, 274, 348
BmrFI	CCNGG	1 cut(s)	154
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	35
BmtI	GCTAGC	1 cut(s)	15
BmuI	ACTGGG	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	207, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 269
Bse1I	ACTGG	2 cut(s)	311, 365
Bse21I	CCTNAGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	2 cut(s)	207, 276
BseLI	CCNNNNNNNGG	2 cut(s)	257, 269
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	311, 365
BshNI	GGYRCC	2 cut(s)	52, 272
BslI	CCNNNNNNNGG	2 cut(s)	257, 269
Bsp143I	GATC	3 cut(s)	162, 323, 340
BspCNI	CTCAG	1 cut(s)	50
BspLI	GGNNCC	4 cut(s)	54, 262, 274, 348
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	2 cut(s)	331, 348
BspT107I	GGYRCC	2 cut(s)	52, 272
BsrI	ACTGG	2 cut(s)	311, 365
BssECI	CCNNGG	2 cut(s)	207, 276
BssMI	GATC	3 cut(s)	162, 323, 340
BssT1I	CCWWGG	2 cut(s)	207, 276
Bst2UI	CCWGG	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	124
BstAPI	GCANNNNNTGC	2 cut(s)	32, 188
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	3 cut(s)	37, 243, 290
BstKTI	GATC	3 cut(s)	165, 326, 343
BstMBI	GATC	3 cut(s)	162, 323, 340
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 102, 179, 188, 197
BstNI	CCWGG	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
Bsu36I	CCTNAGG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	13
CaiI	CAGNNNCTG	2 cut(s)	86, 188
Cfr13I	GGNCC	2 cut(s)	260, 346
CviAII	CATG	2 cut(s)	22, 106
DdeI	CTNAG	3 cut(s)	37, 243, 290
DpnI	GATC	3 cut(s)	164, 325, 342
DpnII	GATC	3 cut(s)	162, 323, 340
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco130I	CCWWGG	2 cut(s)	207, 276
Eco47I	GGWCC	2 cut(s)	260, 346
Eco81I	CCTNAGG	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	152
EcoT14I	CCWWGG	2 cut(s)	207, 276
ErhI	CCWWGG	2 cut(s)	207, 276
FaeI	CATG	2 cut(s)	25, 109
FaiI	YATR	5 cut(s)	8, 23, 107, 396, 420
FatI	CATG	2 cut(s)	21, 105
FbaI	TGATCA	1 cut(s)	162
FspBI	CTAG	1 cut(s)	12
Hin1II	CATG	2 cut(s)	25, 109
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	3 cut(s)	286, 299, 378
HpaI	GTTAAC	1 cut(s)	391
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	2 cut(s)	391, 408
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	2 cut(s)	391, 408
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	1 cut(s)	215
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 102, 179, 188, 197
HpyF3I	CTNAG	3 cut(s)	37, 243, 290
Hsp92II	CATG	2 cut(s)	25, 109
Ksp22I	TGATCA	1 cut(s)	162
KspAI	GTTAAC	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	162, 323, 340
LmnI	GCTCC	1 cut(s)	238
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	3 cut(s)	164, 325, 342
MboI	GATC	3 cut(s)	162, 323, 340
MboII	GAAGA	3 cut(s)	111, 295, 449
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	1 cut(s)	323
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	4 cut(s)	46, 261, 263, 288
MseI	TTAA	2 cut(s)	390, 444
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	4 cut(s)	32, 173, 185, 230
MspR9I	CCNGG	1 cut(s)	154
MunI	CAATTG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	5 cut(s)	32, 102, 179, 188, 197
NdeII	GATC	3 cut(s)	162, 323, 340
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	2 cut(s)	25, 109
NlaIV	GGNNCC	4 cut(s)	54, 262, 274, 348
NspI	RCATGY	1 cut(s)	109
OliI	CACNNNNGTG	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	286, 378
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PpuMI	RGGWCCY	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	4 cut(s)	54, 262, 274, 348
PspPI	GGNCC	2 cut(s)	260, 346
PspPPI	RGGWCCY	1 cut(s)	346
PstNI	CAGNNNCTG	2 cut(s)	86, 188
PsuI	RGATCY	1 cut(s)	323
PvuII	CAGCTG	4 cut(s)	32, 173, 185, 230
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	390, 444
Sau3AI	GATC	3 cut(s)	162, 323, 340
Sau96I	GGNCC	2 cut(s)	260, 346
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	154
SfaNI	GCATC	1 cut(s)	35
SinI	GGWCC	2 cut(s)	260, 346
SmiMI	CAYNNNNRTG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	255
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	2 cut(s)	207, 276
TaqI	TCGA	1 cut(s)	376
TasI	AATT	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	286, 378
Tru1I	TTAA	2 cut(s)	390, 444
Tru9I	TTAA	2 cut(s)	390, 444
TspDTI	ATGAA	1 cut(s)	192
VpaK11BI	GGWCC	2 cut(s)	260, 346
XceI	RCATGY	1 cut(s)	109
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.