pycom10g14830

Photosystem I reaction center subunit IV

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0010941
Physical Location & Seq
Forward (+)
18216017 .. 18217142
1126 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g14830.3

Sequence Viewer

Length: 438 bp
ATGGCTGGCTGTGGCATGGCATCAGCTGCCTCAGGCTTTGTGGTAGCACCAAACGTTGCAACCACCAACGCAGGCTCAGCTTCCAGCCGGAGTAGCATGCTGTTTTTCCCTTCAAAACCCAACACCAACACCAGAAGCACTGCCAGGTTTGTGATCAGGGCAGCTGAAGAAGCCGCTGCGCCGCCGGGCGCCACCACGACTGCACCAGAGGGGGCAGCTACCCCTAAGCCTAAGCCACCACCAATTGGACCCAAGAGAGGCACTAAGGTGAAGATTCTTAGGAGGGAATCCTACTGGTTCAAAGGCATTGGATCTGTTGTGGCTGTGGATCAGGATCCGAATACCCGTTACCCTGTCGTGGTCCGATTCAACAAAGTTAACTATGCCAATGTGTCCACGAATAACTATGCATTGGACGAGATTGAAGAAGTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PSI_PsaE

Protein Analysis

146

Amino Acids

15.29

Weight (kDa)

9.94

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20260 AT4G28750
fragaria_vesca FvH4_2g19960 FvH4_2g19960
malus_domestica MD05G1183900.v1.1 MD10G1171800.v1.1
prunus_persica Prupe.8G210000_v2.0.a1 Prupe.8G210000_v2.0.a1
pyrus_communis pycom05g16890 pycom10g14830
rosa_chinensis RchiOBHm_Chr6g0285621
rosa_laevigata RLG00000012621
rosa_multiflora Rmu_sc0001356.1_g000024
rosa_roxburghii Rroxscaffold_7G00182880
rosa_rugosa Rorug06G0176200
rosa_samantha Rh6AG287600 Rh6BG289000 Rh6CG290200 Rh6DG282900
rosa_wichuraiana Rw6G024730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AccB7I CCANNNNNTGG 1 cut(s) 245
AciI CCGC 2 cut(s) 174, 182
AclI AACGTT 1 cut(s) 54
AclWI GGATC 4 cut(s) 319, 329, 336, 342
AcuI CTGAAG 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 189
AfiI CCNNNNNNNGG 3 cut(s) 245, 257, 358
AgsI TTSAA 4 cut(s) 114, 301, 370, 425
AjnI CCWGG 1 cut(s) 143
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 4 cut(s) 26, 80, 164, 218
AluI AGCT 4 cut(s) 26, 80, 164, 218
AlwI GGATC 4 cut(s) 319, 329, 336, 342
ApeKI GCWGC 4 cut(s) 26, 161, 176, 215
AspLEI GCGC 2 cut(s) 181, 191
AspS9I GGNCC 2 cut(s) 248, 361
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 2 cut(s) 248, 361
AxyI CCTNAGG 1 cut(s) 31
BamHI GGATCC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 188
BbvI GCAGC 4 cut(s) 13, 163, 173, 227
BciT130I CCWGG 1 cut(s) 145
BclI TGATCA 1 cut(s) 153
BcnI CCSGG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 192
BisI GCNGC 6 cut(s) 27, 162, 174, 177, 182, 216
BlpI GCTNAGC 1 cut(s) 76
BlsI GCNGC 6 cut(s) 28, 163, 175, 178, 183, 217
Bme1390I CCNGG 2 cut(s) 145, 186
Bme18I GGWCC 2 cut(s) 248, 361
BmgT120I GGNCC 2 cut(s) 248, 361
BmiI GGNNCC 3 cut(s) 190, 250, 336
BmrFI CCNGG 2 cut(s) 145, 186
BmsI GCATC 1 cut(s) 29
Bpu10I CCTNAGC 2 cut(s) 225, 231
Bpu1102I GCTNAGC 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 189
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 257, 358
Bse1I ACTGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 1 cut(s) 145
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 3 cut(s) 245, 257, 358
BseMII CTCAG 2 cut(s) 45, 90
BseNI ACTGG 1 cut(s) 299
BseXI GCAGC 4 cut(s) 13, 163, 173, 227
BsgI GTGCAG 1 cut(s) 186
BshNI GGYRCC 1 cut(s) 188
BsiSI CCGG 2 cut(s) 88, 185
BslI CCNNNNNNNGG 3 cut(s) 245, 257, 358
Bsp143I GATC 4 cut(s) 153, 311, 328, 334
Bsp1720I GCTNAGC 1 cut(s) 76
BspACI CCGC 2 cut(s) 174, 182
BspCNI CTCAG 2 cut(s) 44, 89
BspLI GGNNCC 3 cut(s) 190, 250, 336
BspPI GGATC 4 cut(s) 319, 329, 336, 342
BspT107I GGYRCC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 299
BssMI GATC 4 cut(s) 153, 311, 328, 334
BssNI GRCGYC 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 145
BstACI GRCGYC 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 7, 73, 98
BstDEI CTNAG 6 cut(s) 31, 76, 225, 231, 264, 278
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 2 cut(s) 181, 191
BstKTI GATC 4 cut(s) 156, 314, 331, 337
BstMBI GATC 4 cut(s) 153, 311, 328, 334
BstMWI GCNNNNNNNGC 4 cut(s) 26, 77, 93, 170
BstNI CCWGG 1 cut(s) 145
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 2 cut(s) 143, 184
BstV1I GCAGC 4 cut(s) 13, 163, 173, 227
BstX2I RGATCY 2 cut(s) 311, 334
BstYI RGATCY 2 cut(s) 311, 334
Bsu36I CCTNAGG 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 3 cut(s) 7, 73, 98
CfoI GCGC 2 cut(s) 181, 191
Cfr13I GGNCC 2 cut(s) 248, 361
CviAII CATG 2 cut(s) 16, 97
DdeI CTNAG 6 cut(s) 31, 76, 225, 231, 264, 278
DinI GGCGCC 1 cut(s) 190
DpnI GATC 4 cut(s) 155, 313, 330, 336
DpnII GATC 4 cut(s) 153, 311, 328, 334
Eco47I GGWCC 2 cut(s) 248, 361
Eco57I CTGAAG 1 cut(s) 186
Eco81I CCTNAGG 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 143
EcoT22I ATGCAT 1 cut(s) 412
EgeI GGCGCC 1 cut(s) 190
EheI GGCGCC 1 cut(s) 190
FaeI CATG 2 cut(s) 19, 100
FaiI YATR 4 cut(s) 17, 98, 384, 408
FatI CATG 2 cut(s) 15, 96
FbaI TGATCA 1 cut(s) 153
Fnu4HI GCNGC 6 cut(s) 27, 162, 174, 177, 182, 216
Fsp4HI GCNGC 6 cut(s) 27, 162, 174, 177, 182, 216
GlaI GCGC 2 cut(s) 180, 190
GluI GCNGC 6 cut(s) 27, 162, 174, 177, 182, 216
HaeII RGCGCY 1 cut(s) 192
HapII CCGG 2 cut(s) 88, 185
HhaI GCGC 2 cut(s) 181, 191
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 2 cut(s) 19, 100
Hin6I GCGC 2 cut(s) 179, 189
HinP1I GCGC 2 cut(s) 179, 189
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 3 cut(s) 274, 287, 366
HpaI GTTAAC 1 cut(s) 379
HpaII CCGG 2 cut(s) 88, 185
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 379, 396
Hpy188I TCNGA 2 cut(s) 339, 365
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 2 cut(s) 379, 396
HpyAV CCTTC 1 cut(s) 120
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 3 cut(s) 59, 203, 410
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 77, 93, 170
HpyF3I CTNAG 6 cut(s) 31, 76, 225, 231, 264, 278
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 2 cut(s) 19, 100
HspAI GCGC 2 cut(s) 179, 189
KasI GGCGCC 1 cut(s) 188
Ksp22I TGATCA 1 cut(s) 153
KspAI GTTAAC 1 cut(s) 379
Kzo9I GATC 4 cut(s) 153, 311, 328, 334
Lsp1109I GCAGC 4 cut(s) 13, 163, 173, 227
LweI GCATC 1 cut(s) 29
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 347
MalI GATC 4 cut(s) 155, 313, 330, 336
MboI GATC 4 cut(s) 153, 311, 328, 334
MboII GAAGA 3 cut(s) 179, 283, 437
MfeI CAATTG 1 cut(s) 243
MflI RGATCY 2 cut(s) 311, 334
MluCI AATT 1 cut(s) 243
Mly113I GGCGCC 1 cut(s) 189
MnlI CCTC 4 cut(s) 40, 202, 251, 276
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 2 cut(s) 378, 432
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 3 cut(s) 26, 164, 176
MspI CCGG 2 cut(s) 88, 185
MspR9I CCNGG 2 cut(s) 145, 186
MunI CAATTG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 4 cut(s) 26, 77, 93, 170
NarI GGCGCC 1 cut(s) 189
NciI CCSGG 1 cut(s) 186
NdeII GATC 4 cut(s) 153, 311, 328, 334
NlaIII CATG 2 cut(s) 19, 100
NlaIV GGNNCC 3 cut(s) 190, 250, 336
NsiI ATGCAT 1 cut(s) 412
NspI RCATGY 1 cut(s) 100
OliI CACNNNNGTG 1 cut(s) 266
PaeI GCATGC 1 cut(s) 100
PfeI GAWTC 3 cut(s) 274, 287, 366
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 6 cut(s) 28, 163, 175, 178, 183, 217
PluTI GGCGCC 1 cut(s) 192
Psp1406I AACGTT 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 3 cut(s) 190, 250, 336
PspPI GGNCC 2 cut(s) 248, 361
PsuI RGATCY 2 cut(s) 311, 334
PvuII CAGCTG 2 cut(s) 26, 164
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 2 cut(s) 378, 432
SatI GCNGC 6 cut(s) 27, 162, 174, 177, 182, 216
Sau3AI GATC 4 cut(s) 153, 311, 328, 334
Sau96I GGNCC 2 cut(s) 248, 361
ScrFI CCNGG 2 cut(s) 145, 186
SetI ASST 7 cut(s) 28, 57, 82, 149, 166, 220, 270
SfaNI GCATC 1 cut(s) 29
SfoI GGCGCC 1 cut(s) 190
SinI GGWCC 2 cut(s) 248, 361
SmiMI CAYNNNNRTG 1 cut(s) 266
SphI GCATGC 1 cut(s) 100
Sse9I AATT 1 cut(s) 243
SsiI CCGC 2 cut(s) 174, 182
SspDI GGCGCC 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 143, 184
TaiI ACGT 1 cut(s) 57
TasI AATT 1 cut(s) 243
TauI GCSGC 2 cut(s) 176, 184
TfiI GAWTC 3 cut(s) 274, 287, 366
Tru1I TTAA 2 cut(s) 378, 432
Tru9I TTAA 2 cut(s) 378, 432
TscAI CASTG 1 cut(s) 145
TseI GCWGC 4 cut(s) 26, 161, 176, 215
TspRI CASTG 1 cut(s) 145
Van91I CCANNNNNTGG 1 cut(s) 245
VpaK11BI GGWCC 2 cut(s) 248, 361
XceI RCATGY 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.