pycom05g16890

Photosystem I reaction center subunit IV

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0010941
Physical Location & Seq
Forward (+)
20175224 .. 20176286
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g16890.1

Sequence Viewer

Length: 387 bp
ATGGCTAGCTGTGGCATCGCATCAGCTGCCTCAGGCTTTGTGGTAGCACCAAATGTTGCAACCACCAACGCAGGCTCAACTTCTAGCCGAAATAGCATGCTGTTTTTCCCATCAAAACCCAGCACCAACACCAGAAGCAATGCTAGGTTTGTGACCAGGTCAGCAGAGGAAGCCGCTGCTCCGACGGCAGCCACCAAGACTGCACCAGAGGGGGAAGCTACCCCTAAGCCTAAGCCACCACCAATTGGACCCAAGAGAGGCACTAAGGTGAAGATTCTGAGGAAGGAATCCTACTGGTTCAAAGGCATTGGATCGATCCTTTGTTGTAGCTGTGGATCAGGATCCGAATACCCGTTACCCGGTCGTGGTCCGGTTCAACAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PSI_PsaE

Protein Analysis

129

Amino Acids

13.18

Weight (kDa)

9.97

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSI_PsaE PF02427 85 - 118 8.3e-09 Photosystem I reaction centre subunit IV / PsaE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20260 AT4G28750
fragaria_vesca FvH4_2g19960 FvH4_2g19960
malus_domestica MD05G1183900.v1.1 MD10G1171800.v1.1
prunus_persica Prupe.8G210000_v2.0.a1 Prupe.8G210000_v2.0.a1
pyrus_communis pycom05g16890 pycom10g14830
rosa_chinensis RchiOBHm_Chr6g0285621
rosa_laevigata RLG00000012621
rosa_multiflora Rmu_sc0001356.1_g000024
rosa_roxburghii Rroxscaffold_7G00182880
rosa_rugosa Rorug06G0176200
rosa_samantha Rh6AG287600 Rh6BG289000 Rh6CG290200 Rh6DG282900
rosa_wichuraiana Rw6G024730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 245
AciI CCGC 1 cut(s) 174
AclWI GGATC 5 cut(s) 310, 319, 336, 343, 349
AfiI CCNNNNNNNGG 4 cut(s) 245, 257, 359, 365
AgsI TTSAA 2 cut(s) 301, 377
AjnI CCWGG 1 cut(s) 155
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 4 cut(s) 9, 26, 218, 330
AluI AGCT 4 cut(s) 9, 26, 218, 330
AlwI GGATC 5 cut(s) 310, 319, 336, 343, 349
ApeKI GCWGC 3 cut(s) 26, 176, 188
AspS9I GGNCC 2 cut(s) 248, 368
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 1 cut(s) 280
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 2 cut(s) 248, 368
AxyI CCTNAGG 1 cut(s) 31
BamHI GGATCC 1 cut(s) 341
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
BbvI GCAGC 3 cut(s) 13, 163, 200
BccI CCATC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 157
BcnI CCSGG 1 cut(s) 360
BfaI CTAG 3 cut(s) 6, 84, 144
BisI GCNGC 4 cut(s) 27, 174, 177, 189
BlsI GCNGC 4 cut(s) 28, 175, 178, 190
Bme1390I CCNGG 2 cut(s) 157, 360
Bme18I GGWCC 2 cut(s) 248, 368
BmgT120I GGNCC 2 cut(s) 248, 368
BmiI GGNNCC 2 cut(s) 250, 343
BmrFI CCNGG 2 cut(s) 157, 360
BmsI GCATC 2 cut(s) 24, 29
BmtI GCTAGC 1 cut(s) 9
Bpu10I CCTNAGC 2 cut(s) 225, 231
BpuMI CCSGG 1 cut(s) 360
Bsa29I ATCGAT 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 340
BsaWI WCCGGW 1 cut(s) 370
Bsc4I CCNNNNNNNGG 4 cut(s) 245, 257, 359, 365
Bse1I ACTGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 31
Bse3DI GCAATG 1 cut(s) 145
Bse8I GATNNNNATC 1 cut(s) 340
BseBI CCWGG 1 cut(s) 157
BseCI ATCGAT 1 cut(s) 314
BseJI GATNNNNATC 1 cut(s) 340
BseLI CCNNNNNNNGG 4 cut(s) 245, 257, 359, 365
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 45, 269
BseNI ACTGG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 13, 163, 200
BseYI CCCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 186
Bsh1285I CGRYCG 1 cut(s) 364
BshVI ATCGAT 1 cut(s) 314
BsiEI CGRYCG 1 cut(s) 364
BsiSI CCGG 2 cut(s) 360, 371
BslI CCNNNNNNNGG 4 cut(s) 245, 257, 359, 365
Bsp143I GATC 4 cut(s) 311, 315, 335, 341
BspACI CCGC 1 cut(s) 174
BspCNI CTCAG 2 cut(s) 44, 270
BspDI ATCGAT 1 cut(s) 314
BspLI GGNNCC 2 cut(s) 250, 343
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 5 cut(s) 310, 319, 336, 343, 349
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 1 cut(s) 299
BssMI GATC 4 cut(s) 311, 315, 335, 341
Bst2UI CCWGG 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 7, 73, 98
BstDEI CTNAG 5 cut(s) 31, 225, 231, 264, 278
BstKTI GATC 4 cut(s) 314, 318, 338, 344
BstMBI GATC 4 cut(s) 311, 315, 335, 341
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 4 cut(s) 26, 93, 170, 185
BstNI CCWGG 1 cut(s) 157
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 2 cut(s) 155, 358
BstV1I GCAGC 3 cut(s) 13, 163, 200
BstX2I RGATCY 1 cut(s) 341
BstYI RGATCY 1 cut(s) 341
Bsu15I ATCGAT 1 cut(s) 314
Bsu36I CCTNAGG 1 cut(s) 31
BsuTUI ATCGAT 1 cut(s) 314
Cac8I GCNNGC 3 cut(s) 7, 73, 98
Cfr13I GGNCC 2 cut(s) 248, 368
ClaI ATCGAT 1 cut(s) 314
CsiI ACCWGGT 1 cut(s) 155
CviAII CATG 1 cut(s) 97
DdeI CTNAG 5 cut(s) 31, 225, 231, 264, 278
DpnI GATC 4 cut(s) 313, 317, 337, 343
DpnII GATC 4 cut(s) 311, 315, 335, 341
Eco47I GGWCC 2 cut(s) 248, 368
Eco81I CCTNAGG 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 155
FaeI CATG 1 cut(s) 100
FaiI YATR 1 cut(s) 98
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 4 cut(s) 27, 174, 177, 189
Fsp4HI GCNGC 4 cut(s) 27, 174, 177, 189
FspBI CTAG 3 cut(s) 6, 84, 144
GluI GCNGC 4 cut(s) 27, 174, 177, 189
GsaI CCCAGC 1 cut(s) 123
HapII CCGG 2 cut(s) 360, 371
Hin1II CATG 1 cut(s) 100
HinfI GANTC 2 cut(s) 274, 287
HpaII CCGG 2 cut(s) 360, 371
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 3 cut(s) 183, 279, 346
Hpy188III TCNNGA 1 cut(s) 339
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 59, 203
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 93, 170, 185
HpyF3I CTNAG 5 cut(s) 31, 225, 231, 264, 278
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 4 cut(s) 311, 315, 335, 341
LmnI GCTCC 1 cut(s) 184
Lsp1109I GCAGC 3 cut(s) 13, 163, 200
LweI GCATC 2 cut(s) 24, 29
MabI ACCWGGT 1 cut(s) 155
MaeI CTAG 3 cut(s) 6, 84, 144
MaeIII GTNAC 2 cut(s) 151, 354
MalI GATC 4 cut(s) 313, 317, 337, 343
MboI GATC 4 cut(s) 311, 315, 335, 341
MboII GAAGA 1 cut(s) 283
MfeI CAATTG 1 cut(s) 243
MflI RGATCY 1 cut(s) 341
MluCI AATT 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 5 cut(s) 40, 160, 202, 251, 273
MseI TTAA 1 cut(s) 385
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 2 cut(s) 26, 176
MspI CCGG 2 cut(s) 360, 371
MspR9I CCNGG 2 cut(s) 157, 360
MunI CAATTG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 4 cut(s) 26, 93, 170, 185
NciI CCSGG 1 cut(s) 360
NdeII GATC 4 cut(s) 311, 315, 335, 341
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 2 cut(s) 250, 343
NmuCI GTSAC 1 cut(s) 151
NspI RCATGY 1 cut(s) 100
OliI CACNNNNGTG 1 cut(s) 266
PaeI GCATGC 1 cut(s) 100
PfeI GAWTC 2 cut(s) 274, 287
PflFI GACNNNGTC 1 cut(s) 157
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 4 cut(s) 28, 175, 178, 190
Psp6I CCWGG 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 2 cut(s) 250, 343
PspPI GGNCC 2 cut(s) 248, 368
PsuI RGATCY 1 cut(s) 341
PsyI GACNNNGTC 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 1 cut(s) 385
SatI GCNGC 4 cut(s) 27, 174, 177, 189
Sau3AI GATC 4 cut(s) 311, 315, 335, 341
Sau96I GGNCC 2 cut(s) 248, 368
ScrFI CCNGG 2 cut(s) 157, 360
SetI ASST 7 cut(s) 11, 28, 149, 161, 220, 270, 332
SexAI ACCWGGT 1 cut(s) 155
SfaNI GCATC 2 cut(s) 24, 29
SinI GGWCC 2 cut(s) 248, 368
SmiMI CAYNNNNRTG 1 cut(s) 266
SphI GCATGC 1 cut(s) 100
Sse9I AATT 1 cut(s) 243
SsiI CCGC 1 cut(s) 174
SspMI CTAG 3 cut(s) 6, 84, 144
StyD4I CCNGG 2 cut(s) 155, 358
TaqI TCGA 1 cut(s) 314
TasI AATT 1 cut(s) 243
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 2 cut(s) 274, 287
Tru1I TTAA 1 cut(s) 385
Tru9I TTAA 1 cut(s) 385
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 3 cut(s) 26, 176, 188
Tsp45I GTSAC 1 cut(s) 151
Tth111I GACNNNGTC 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 245
VpaK11BI GGWCC 2 cut(s) 248, 368
XceI RCATGY 1 cut(s) 100
XspI CTAG 3 cut(s) 6, 84, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.