AT2G20360

NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
8785960 .. 8789570
3611 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20360.1

Sequence Viewer

Length: 1209 bp
ATGCAAGTAGTTTCCAGGAGATTAGTTCAACGGCCTCTCGTCGGAGGAGCTTCGATCTATTCATCTTCTTCTCTCAGATCGCTCTACGGAGTCTCTAATCACCTGAATGGGACTGATAATTGTCGCTATTCGTCTTCCCTCGCTACTAAGGGCGTGGGACACCTCGCTCGCAAGGGTACTGGTGGGAGATCTTCCGTAAGTGGCATTGTAGCTACAGTATTTGGAGCCACAGGATTTCTGGGTCGTTATCTTGTGCAGCAGCTAGCTAAAATGGGATCACAAGTGCTTGTTCCTTTCCGAGGCTCAGAGGACTCTCCTCGACATCTCAAGTTGATGGGAGATTTAGGACAGGTGGTACCAATGAAATTTGATCCAAGAGATGAAGACTCGATTAAGGCTGTCATGGCCAAGGCTAATGTCGTTATCAATCTAATTGGAAGAGAGTACGAGACAAGAAATTTCAGTTTTGAAGATGCGAATCATCATATTGCTGAGAAACTTGCATTGGTGGCCAAGGAACACGGTGGGATAATGAGATATATTCAAGTTTCTTGCCTAGGAGCTTCTGTGTCATCTCCTTCAAGAATGCTGAGGGCAAAAGCTGCTGCTGAGGAAGCTGTCTTGAACGCACTGCCTGAGGCAACCATCATGAGACCTGCAACCATGATTGGTACAGAAGACAGAATCTTGAACCCCTGGTCAATGTTCGTTAAAAAATATGGTTTCCTCCCGCTCATAGGTGGTGGAACCACCAAATTCCAGCCTGTTTATGTGGTTGATGTTGCTGCTGCGATTGTTGCTGCTCTAAAGGATGATGGCTCCAGCATGGGGAAAACATACGAATTGGGTGGTCCAGATGTCTTTACCACTCACGAGTTGGCAGAGATCATGTATGATATGATTCGTGAATGGCCTCGGTATGTGAAGCTTCCGTTTCCAATTGCCAAGGCAATGGCGGCTCCTCGAGACTTCATGGTGAACAAAGTCCCGTTCCCCTTACCCTCTCCTCAGATCTTCAACCTGGATCAAATCAATGCACTTACAACCGATACACTTGTATCTGACAACGCCTTGAAGTTTCAGGATCTGGACCTTGTCCCCCATAAATTGAAGGGATATCCGGTCGAGTTTCTTATCCAATATCGCAAGGGTGGTCCTAACTTCGGTTCTACTGTCAGTGAAAAGATACCAACAGACTTCTACCCTTGA

Protein Analysis

402

Amino Acids

43.94

Weight (kDa)

9.26

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 72 - 283 1.4e-13 NAD dependent epimerase/dehydratase family
NmrA PF05368 72 - 317 1.9e-09 NmrA-like family
NAD_binding_10 PF13460 75 - 226 8.2e-11 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 664
Acc65I GGTACC 1 cut(s) 355
AccB1I GGYRCC 1 cut(s) 355
AccBSI CCGCTC 1 cut(s) 733
AciI CCGC 2 cut(s) 731, 956
AclWI GGATC 4 cut(s) 283, 365, 1032, 1092
AcoI YGGCCR 2 cut(s) 405, 510
AcsI RAATTY 3 cut(s) 365, 457, 755
AfaI GTAC 4 cut(s) 178, 357, 446, 673
AfiI CCNNNNNNNGG 5 cut(s) 41, 299, 737, 828, 1163
AgsI TTSAA 9 cut(s) 29, 470, 545, 582, 625, 691, 1018, 1075, 1111
AjnI CCWGG 3 cut(s) 14, 695, 1020
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 8 cut(s) 50, 212, 262, 266, 563, 602, 617, 928
AluI AGCT 8 cut(s) 50, 212, 262, 266, 563, 602, 617, 928
Alw26I GTCTC 4 cut(s) 97, 443, 646, 960
AlwI GGATC 4 cut(s) 283, 365, 1032, 1092
AlwNI CAGNNNCTG 1 cut(s) 1087
Ama87I CYCGRG 1 cut(s) 963
AoxI GGCC 4 cut(s) 32, 405, 510, 911
ApeKI GCWGC 7 cut(s) 256, 259, 602, 605, 785, 788, 800
ApoI RAATTY 3 cut(s) 365, 457, 755
Asp718I GGTACC 1 cut(s) 355
AspA2I CCTAGG 1 cut(s) 556
AspS9I GGNCC 3 cut(s) 851, 1090, 1154
AsuHPI GGTGA 2 cut(s) 92, 988
AsuNHI GCTAGC 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 963
AvaII GGWCC 3 cut(s) 851, 1090, 1154
AvrII CCTAGG 1 cut(s) 556
AxyI CCTNAGG 1 cut(s) 636
BaeI ACNNNNGTAYC 4 cut(s) 1041, 1041, 1074, 1074
BalI TGGCCA 2 cut(s) 407, 512
BanI GGYRCC 1 cut(s) 355
BauI CACGAG 1 cut(s) 872
BbsI GAAGAC 3 cut(s) 126, 390, 684
BbvCI CCTCAGC 2 cut(s) 590, 609
BbvI GCAGC 7 cut(s) 268, 271, 589, 592, 772, 775, 787
BccI CCATC 3 cut(s) 328, 653, 809
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 3 cut(s) 16, 697, 1022
BcoDI GTCTC 4 cut(s) 97, 443, 646, 960
BfaI CTAG 2 cut(s) 263, 557
BfmI CTRYAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 664
BglII AGATCT 2 cut(s) 188, 1011
BisI GCNGC 8 cut(s) 257, 260, 603, 606, 786, 789, 801, 957
BlnI CCTAGG 1 cut(s) 556
BlsI GCNGC 8 cut(s) 258, 261, 604, 607, 787, 790, 802, 958
Bme1390I CCNGG 3 cut(s) 16, 697, 1022
Bme18I GGWCC 3 cut(s) 851, 1090, 1154
BmeT110I CYCGRG 1 cut(s) 963
BmgT120I GGNCC 3 cut(s) 851, 1090, 1154
BmiI GGNNCC 5 cut(s) 226, 357, 748, 820, 960
BmrFI CCNGG 3 cut(s) 16, 697, 1022
BmsI GCATC 1 cut(s) 463
BmtI GCTAGC 1 cut(s) 266
BpiI GAAGAC 3 cut(s) 126, 390, 684
BpmI CTGGAG 1 cut(s) 805
Bpu10I CCTNAGC 2 cut(s) 590, 609
BpuEI CTTGAG 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 477
BsaI GGTCTC 1 cut(s) 646
BsaJI CCNNGG 7 cut(s) 298, 408, 513, 556, 695, 914, 945
BsaWI WCCGGW 1 cut(s) 1120
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 299, 737, 828, 1163
Bse1I ACTGG 1 cut(s) 184
Bse21I CCTNAGG 1 cut(s) 636
Bse3DI GCAATG 1 cut(s) 957
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 3 cut(s) 16, 697, 1022
BseDI CCNNGG 7 cut(s) 298, 408, 513, 556, 695, 914, 945
BseGI GGATG 1 cut(s) 817
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 5 cut(s) 41, 299, 737, 828, 1163
BseMI GCAATG 1 cut(s) 957
BseMII CTCAG 7 cut(s) 88, 318, 483, 581, 600, 627, 1022
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 4 cut(s) 60, 306, 951, 996
BseXI GCAGC 7 cut(s) 268, 271, 589, 592, 772, 775, 787
BsgI GTGCAG 1 cut(s) 275
Bsh1285I CGRYCG 1 cut(s) 1125
BshFI GGCC 4 cut(s) 34, 407, 512, 913
BshNI GGYRCC 1 cut(s) 355
BsiEI CGRYCG 1 cut(s) 1125
BsiHKCI CYCGRG 1 cut(s) 963
BsiSI CCGG 1 cut(s) 1121
BslFI GGGAC 4 cut(s) 124, 171, 971, 1082
BslI CCNNNNNNNGG 5 cut(s) 41, 299, 737, 828, 1163
BsmAI GTCTC 4 cut(s) 97, 443, 646, 960
BsmFI GGGAC 4 cut(s) 124, 171, 971, 1082
BsmI GAATGC 1 cut(s) 591
BsnI GGCC 4 cut(s) 34, 407, 512, 913
Bso31I GGTCTC 1 cut(s) 646
BsoBI CYCGRG 1 cut(s) 963
Bsp143I GATC 9 cut(s) 54, 77, 188, 275, 370, 885, 1011, 1024, 1084
BspACI CCGC 2 cut(s) 731, 956
BspANI GGCC 4 cut(s) 34, 407, 512, 913
BspCNI CTCAG 7 cut(s) 87, 317, 484, 582, 601, 628, 1021
BspHI TCATGA 1 cut(s) 648
BspLI GGNNCC 5 cut(s) 226, 357, 748, 820, 960
BspMI ACCTGC 1 cut(s) 664
BspOI GCTAGC 1 cut(s) 266
BspPI GGATC 4 cut(s) 283, 365, 1032, 1092
BspT107I GGYRCC 1 cut(s) 355
BspTNI GGTCTC 1 cut(s) 646
BsrBI CCGCTC 1 cut(s) 733
BsrDI GCAATG 1 cut(s) 957
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 7 cut(s) 298, 408, 513, 556, 695, 914, 945
BssMI GATC 9 cut(s) 54, 77, 188, 275, 370, 885, 1011, 1024, 1084
BssSI CACGAG 1 cut(s) 872
BssT1I CCWWGG 4 cut(s) 408, 513, 556, 945
Bst2BI CACGAG 1 cut(s) 872
Bst2UI CCWGG 3 cut(s) 16, 697, 1022
Bst4CI ACNGT 3 cut(s) 217, 524, 1174
Bst6I CTCTTC 1 cut(s) 433
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 169, 264
BstDEI CTNAG 8 cut(s) 74, 147, 304, 492, 590, 609, 636, 1008
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 817
BstKTI GATC 9 cut(s) 57, 80, 191, 278, 373, 888, 1014, 1027, 1087
BstMAI GTCTC 4 cut(s) 97, 443, 646, 960
BstMBI GATC 9 cut(s) 54, 77, 188, 275, 370, 885, 1011, 1024, 1084
BstMCI CGRYCG 1 cut(s) 1125
BstMWI GCNNNNNNNGC 6 cut(s) 404, 509, 602, 614, 797, 956
BstNI CCWGG 3 cut(s) 16, 697, 1022
BstSCI CCNGG 3 cut(s) 14, 695, 1020
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 7 cut(s) 268, 271, 589, 592, 772, 775, 787
BstV2I GAAGAC 3 cut(s) 126, 390, 684
BstX2I RGATCY 3 cut(s) 188, 1011, 1084
BstXI CCANNNNNNTGG 1 cut(s) 952
BstYI RGATCY 3 cut(s) 188, 1011, 1084
Bsu36I CCTNAGG 1 cut(s) 636
BsuRI GGCC 4 cut(s) 34, 407, 512, 913
BtsCI GGATG 1 cut(s) 817
BtsI GCAGTG 1 cut(s) 629
BtsIMutI CAGTG 2 cut(s) 629, 1183
BveI ACCTGC 1 cut(s) 664
Cac8I GCNNGC 2 cut(s) 169, 264
CaiI CAGNNNCTG 1 cut(s) 1087
CciI TCATGA 1 cut(s) 648
Cfr13I GGNCC 3 cut(s) 851, 1090, 1154
Csp6I GTAC 4 cut(s) 177, 356, 445, 672
CviAII CATG 6 cut(s) 403, 649, 664, 826, 889, 973
CviQI GTAC 4 cut(s) 177, 356, 445, 672
DdeI CTNAG 8 cut(s) 74, 147, 304, 492, 590, 609, 636, 1008
DpnI GATC 9 cut(s) 56, 79, 190, 277, 372, 887, 1013, 1026, 1086
DpnII GATC 9 cut(s) 54, 77, 188, 275, 370, 885, 1011, 1024, 1084
EaeI YGGCCR 2 cut(s) 405, 510
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
Eco130I CCWWGG 4 cut(s) 408, 513, 556, 945
Eco31I GGTCTC 1 cut(s) 646
Eco32I GATATC 1 cut(s) 1118
Eco47I GGWCC 3 cut(s) 851, 1090, 1154
Eco81I CCTNAGG 1 cut(s) 636
Eco88I CYCGRG 1 cut(s) 963
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoRII CCWGG 3 cut(s) 14, 695, 1020
EcoRV GATATC 1 cut(s) 1118
EcoT14I CCWWGG 4 cut(s) 408, 513, 556, 945
ErhI CCWWGG 4 cut(s) 408, 513, 556, 945
FaeI CATG 6 cut(s) 406, 652, 667, 829, 892, 976
FaqI GGGAC 4 cut(s) 124, 171, 971, 1082
FatI CATG 6 cut(s) 402, 648, 663, 825, 888, 972
FauI CCCGC 1 cut(s) 738
Fnu4HI GCNGC 8 cut(s) 257, 260, 603, 606, 786, 789, 801, 957
FokI GGATG 1 cut(s) 824
Fsp4HI GCNGC 8 cut(s) 257, 260, 603, 606, 786, 789, 801, 957
FspBI CTAG 2 cut(s) 263, 557
GluI GCNGC 8 cut(s) 257, 260, 603, 606, 786, 789, 801, 957
GsuI CTGGAG 1 cut(s) 805
HaeIII GGCC 4 cut(s) 34, 407, 512, 913
HapII CCGG 1 cut(s) 1121
Hin1II CATG 6 cut(s) 406, 652, 667, 829, 892, 976
HindIII AAGCTT 1 cut(s) 926
HinfI GANTC 6 cut(s) 90, 311, 386, 478, 684, 901
HpaII CCGG 1 cut(s) 1121
HphI GGTGA 2 cut(s) 92, 988
Hpy166II GTNNAC 1 cut(s) 979
Hpy188I TCNGA 6 cut(s) 44, 77, 299, 307, 1011, 1063
Hpy8I GTNNAC 1 cut(s) 979
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 2 cut(s) 588, 1105
HpyCH4III ACNGT 3 cut(s) 217, 524, 1174
HpyCH4V TGCA 5 cut(s) 4, 256, 503, 659, 1037
HpyF10VI GCNNNNNNNGC 6 cut(s) 404, 509, 602, 614, 797, 956
HpyF3I CTNAG 8 cut(s) 74, 147, 304, 492, 590, 609, 636, 1008
Hsp92II CATG 6 cut(s) 406, 652, 667, 829, 892, 976
KpnI GGTACC 1 cut(s) 359
Kzo9I GATC 9 cut(s) 54, 77, 188, 275, 370, 885, 1011, 1024, 1084
LmnI GCTCC 5 cut(s) 47, 224, 560, 824, 964
Lsp1109I GCAGC 7 cut(s) 268, 271, 589, 592, 772, 775, 787
LweI GCATC 1 cut(s) 463
MaeI CTAG 2 cut(s) 263, 557
MalI GATC 9 cut(s) 56, 79, 190, 277, 372, 887, 1013, 1026, 1086
MbiI CCGCTC 1 cut(s) 733
MboI GATC 9 cut(s) 54, 77, 188, 275, 370, 885, 1011, 1024, 1084
MboII GAAGA 9 cut(s) 57, 60, 126, 183, 395, 450, 482, 689, 1006
MfeI CAATTG 1 cut(s) 939
MflI RGATCY 3 cut(s) 188, 1011, 1084
MlsI TGGCCA 2 cut(s) 407, 512
MluCI AATT 8 cut(s) 118, 365, 432, 457, 755, 842, 939, 1106
MluNI TGGCCA 2 cut(s) 407, 512
MlyI GAGTC 3 cut(s) 99, 305, 380
MmeI TCCRAC 1 cut(s) 22
Mox20I TGGCCA 2 cut(s) 407, 512
MscI TGGCCA 2 cut(s) 407, 512
MseI TTAA 2 cut(s) 393, 711
MslI CAYNNNNRTG 1 cut(s) 105
Msp20I TGGCCA 2 cut(s) 407, 512
MspI CCGG 1 cut(s) 1121
MspR9I CCNGG 3 cut(s) 16, 697, 1022
MunI CAATTG 1 cut(s) 939
Mva1269I GAATGC 1 cut(s) 591
MvaI CCWGG 3 cut(s) 16, 697, 1022
MwoI GCNNNNNNNGC 6 cut(s) 404, 509, 602, 614, 797, 956
NdeII GATC 9 cut(s) 54, 77, 188, 275, 370, 885, 1011, 1024, 1084
NheI GCTAGC 1 cut(s) 262
NlaIII CATG 6 cut(s) 406, 652, 667, 829, 892, 976
NlaIV GGNNCC 5 cut(s) 226, 357, 748, 820, 960
PaeR7I CTCGAG 1 cut(s) 963
PagI TCATGA 1 cut(s) 648
PctI GAATGC 1 cut(s) 591
PfeI GAWTC 3 cut(s) 478, 684, 901
PflFI GACNNNGTC 1 cut(s) 1094
PfoI TCCNGGA 1 cut(s) 14
PkrI GCNGC 8 cut(s) 258, 261, 604, 607, 787, 790, 802, 958
PleI GAGTC 3 cut(s) 98, 305, 380
PpsI GAGTC 3 cut(s) 98, 305, 380
Psp6I CCWGG 3 cut(s) 14, 695, 1020
PspGI CCWGG 3 cut(s) 14, 695, 1020
PspN4I GGNNCC 5 cut(s) 226, 357, 748, 820, 960
PspPI GGNCC 3 cut(s) 851, 1090, 1154
PstNI CAGNNNCTG 1 cut(s) 1087
PsuI RGATCY 3 cut(s) 188, 1011, 1084
PsyI GACNNNGTC 1 cut(s) 1094
RsaI GTAC 4 cut(s) 178, 357, 446, 673
RsaNI GTAC 4 cut(s) 177, 356, 445, 672
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 2 cut(s) 393, 711
SatI GCNGC 8 cut(s) 257, 260, 603, 606, 786, 789, 801, 957
Sau3AI GATC 9 cut(s) 54, 77, 188, 275, 370, 885, 1011, 1024, 1084
Sau96I GGNCC 3 cut(s) 851, 1090, 1154
SchI GAGTC 3 cut(s) 99, 305, 380
ScrFI CCNGG 3 cut(s) 16, 697, 1022
SfaNI GCATC 1 cut(s) 463
SfcI CTRYAG 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 963
SinI GGWCC 3 cut(s) 851, 1090, 1154
SlaI CTCGAG 1 cut(s) 963
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 2 cut(s) 326, 963
SmoI CTYRAG 2 cut(s) 326, 963
Sse9I AATT 8 cut(s) 118, 365, 432, 457, 755, 842, 939, 1106
SsiI CCGC 2 cut(s) 731, 956
SspMI CTAG 2 cut(s) 263, 557
StyD4I CCNGG 3 cut(s) 14, 695, 1020
StyI CCWWGG 4 cut(s) 408, 513, 556, 945
TaaI ACNGT 3 cut(s) 217, 524, 1174
TaqI TCGA 5 cut(s) 53, 319, 389, 964, 1125
TasI AATT 8 cut(s) 118, 365, 432, 457, 755, 842, 939, 1106
TauI GCSGC 1 cut(s) 959
TfiI GAWTC 3 cut(s) 478, 684, 901
Tru1I TTAA 2 cut(s) 393, 711
Tru9I TTAA 2 cut(s) 393, 711
TscAI CASTG 2 cut(s) 636, 1183
TseI GCWGC 7 cut(s) 256, 259, 602, 605, 785, 788, 800
TspDTI ATGAA 4 cut(s) 51, 377, 396, 961
TspGWI ACGGA 3 cut(s) 102, 184, 921
TspRI CASTG 2 cut(s) 636, 1183
Tth111I GACNNNGTC 1 cut(s) 1094
VpaK11BI GGWCC 3 cut(s) 851, 1090, 1154
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 3 cut(s) 365, 457, 755
XcmI CCANNNNNNNNNTGG 2 cut(s) 235, 874
XhoI CTCGAG 1 cut(s) 963
XmaJI CCTAGG 1 cut(s) 556
XspI CTAG 2 cut(s) 263, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.