NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G20360 |
| fragaria_vesca | FvH4_2g20370 FvH4_2g20370 FvH4_2g20370 |
| malus_domestica | MD05G1187700.v1.1 MD10G1175400.v1.1 |
| prunus_persica | Prupe.8G214700_v2.0.a1 Prupe.8G214700_v2.0.a1 Prupe.8G214700_v2.0.a1 |
| pyrus_communis | pycom05g17250 pycom10g15110 pycom10g15120 |
| rosa_chinensis | RchiOBHm_Chr6g0286481 |
| rosa_laevigata | RLG00000012568 |
| rosa_multiflora | Rmu_sc0004816.1_g000013 Rmu_sc0005089.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00182300 |
| rosa_rugosa | Rorug06G0180100 |
| rosa_samantha | Rh6AG292300 Rh6CG296600 Rh6DG288400 |
| rosa_wichuraiana | Rw6G025210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 664 |
| Acc65I | GGTACC | 1 cut(s) | 355 |
| AccB1I | GGYRCC | 1 cut(s) | 355 |
| AccBSI | CCGCTC | 1 cut(s) | 733 |
| AciI | CCGC | 2 cut(s) | 731, 956 |
| AclWI | GGATC | 4 cut(s) | 283, 365, 1032, 1092 |
| AcoI | YGGCCR | 2 cut(s) | 405, 510 |
| AcsI | RAATTY | 3 cut(s) | 365, 457, 755 |
| AfaI | GTAC | 4 cut(s) | 178, 357, 446, 673 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 41, 299, 737, 828, 1163 |
| AgsI | TTSAA | 9 cut(s) | 29, 470, 545, 582, 625, 691, 1018, 1075, 1111 |
| AjnI | CCWGG | 3 cut(s) | 14, 695, 1020 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 488, 520 |
| AluBI | AGCT | 8 cut(s) | 50, 212, 262, 266, 563, 602, 617, 928 |
| AluI | AGCT | 8 cut(s) | 50, 212, 262, 266, 563, 602, 617, 928 |
| Alw26I | GTCTC | 4 cut(s) | 97, 443, 646, 960 |
| AlwI | GGATC | 4 cut(s) | 283, 365, 1032, 1092 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1087 |
| Ama87I | CYCGRG | 1 cut(s) | 963 |
| AoxI | GGCC | 4 cut(s) | 32, 405, 510, 911 |
| ApeKI | GCWGC | 7 cut(s) | 256, 259, 602, 605, 785, 788, 800 |
| ApoI | RAATTY | 3 cut(s) | 365, 457, 755 |
| Asp718I | GGTACC | 1 cut(s) | 355 |
| AspA2I | CCTAGG | 1 cut(s) | 556 |
| AspS9I | GGNCC | 3 cut(s) | 851, 1090, 1154 |
| AsuHPI | GGTGA | 2 cut(s) | 92, 988 |
| AsuNHI | GCTAGC | 1 cut(s) | 262 |
| AvaI | CYCGRG | 1 cut(s) | 963 |
| AvaII | GGWCC | 3 cut(s) | 851, 1090, 1154 |
| AvrII | CCTAGG | 1 cut(s) | 556 |
| AxyI | CCTNAGG | 1 cut(s) | 636 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1041, 1041, 1074, 1074 |
| BalI | TGGCCA | 2 cut(s) | 407, 512 |
| BanI | GGYRCC | 1 cut(s) | 355 |
| BauI | CACGAG | 1 cut(s) | 872 |
| BbsI | GAAGAC | 3 cut(s) | 126, 390, 684 |
| BbvCI | CCTCAGC | 2 cut(s) | 590, 609 |
| BbvI | GCAGC | 7 cut(s) | 268, 271, 589, 592, 772, 775, 787 |
| BccI | CCATC | 3 cut(s) | 328, 653, 809 |
| BceAI | ACGGC | 1 cut(s) | 47 |
| BciT130I | CCWGG | 3 cut(s) | 16, 697, 1022 |
| BcoDI | GTCTC | 4 cut(s) | 97, 443, 646, 960 |
| BfaI | CTAG | 2 cut(s) | 263, 557 |
| BfmI | CTRYAG | 1 cut(s) | 213 |
| BfuAI | ACCTGC | 1 cut(s) | 664 |
| BglII | AGATCT | 2 cut(s) | 188, 1011 |
| BisI | GCNGC | 8 cut(s) | 257, 260, 603, 606, 786, 789, 801, 957 |
| BlnI | CCTAGG | 1 cut(s) | 556 |
| BlsI | GCNGC | 8 cut(s) | 258, 261, 604, 607, 787, 790, 802, 958 |
| Bme1390I | CCNGG | 3 cut(s) | 16, 697, 1022 |
| Bme18I | GGWCC | 3 cut(s) | 851, 1090, 1154 |
| BmeT110I | CYCGRG | 1 cut(s) | 963 |
| BmgT120I | GGNCC | 3 cut(s) | 851, 1090, 1154 |
| BmiI | GGNNCC | 5 cut(s) | 226, 357, 748, 820, 960 |
| BmrFI | CCNGG | 3 cut(s) | 16, 697, 1022 |
| BmsI | GCATC | 1 cut(s) | 463 |
| BmtI | GCTAGC | 1 cut(s) | 266 |
| BpiI | GAAGAC | 3 cut(s) | 126, 390, 684 |
| BpmI | CTGGAG | 1 cut(s) | 805 |
| Bpu10I | CCTNAGC | 2 cut(s) | 590, 609 |
| BpuEI | CTTGAG | 1 cut(s) | 311 |
| BsaBI | GATNNNNATC | 1 cut(s) | 477 |
| BsaI | GGTCTC | 1 cut(s) | 646 |
| BsaJI | CCNNGG | 7 cut(s) | 298, 408, 513, 556, 695, 914, 945 |
| BsaWI | WCCGGW | 1 cut(s) | 1120 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 552, 582 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 41, 299, 737, 828, 1163 |
| Bse1I | ACTGG | 1 cut(s) | 184 |
| Bse21I | CCTNAGG | 1 cut(s) | 636 |
| Bse3DI | GCAATG | 1 cut(s) | 957 |
| Bse8I | GATNNNNATC | 1 cut(s) | 477 |
| BseBI | CCWGG | 3 cut(s) | 16, 697, 1022 |
| BseDI | CCNNGG | 7 cut(s) | 298, 408, 513, 556, 695, 914, 945 |
| BseGI | GGATG | 1 cut(s) | 817 |
| BseJI | GATNNNNATC | 1 cut(s) | 477 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 41, 299, 737, 828, 1163 |
| BseMI | GCAATG | 1 cut(s) | 957 |
| BseMII | CTCAG | 7 cut(s) | 88, 318, 483, 581, 600, 627, 1022 |
| BseNI | ACTGG | 1 cut(s) | 184 |
| BseRI | GAGGAG | 4 cut(s) | 60, 306, 951, 996 |
| BseXI | GCAGC | 7 cut(s) | 268, 271, 589, 592, 772, 775, 787 |
| BsgI | GTGCAG | 1 cut(s) | 275 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1125 |
| BshFI | GGCC | 4 cut(s) | 34, 407, 512, 913 |
| BshNI | GGYRCC | 1 cut(s) | 355 |
| BsiEI | CGRYCG | 1 cut(s) | 1125 |
| BsiHKCI | CYCGRG | 1 cut(s) | 963 |
| BsiSI | CCGG | 1 cut(s) | 1121 |
| BslFI | GGGAC | 4 cut(s) | 124, 171, 971, 1082 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 41, 299, 737, 828, 1163 |
| BsmAI | GTCTC | 4 cut(s) | 97, 443, 646, 960 |
| BsmFI | GGGAC | 4 cut(s) | 124, 171, 971, 1082 |
| BsmI | GAATGC | 1 cut(s) | 591 |
| BsnI | GGCC | 4 cut(s) | 34, 407, 512, 913 |
| Bso31I | GGTCTC | 1 cut(s) | 646 |
| BsoBI | CYCGRG | 1 cut(s) | 963 |
| Bsp143I | GATC | 9 cut(s) | 54, 77, 188, 275, 370, 885, 1011, 1024, 1084 |
| BspACI | CCGC | 2 cut(s) | 731, 956 |
| BspANI | GGCC | 4 cut(s) | 34, 407, 512, 913 |
| BspCNI | CTCAG | 7 cut(s) | 87, 317, 484, 582, 601, 628, 1021 |
| BspHI | TCATGA | 1 cut(s) | 648 |
| BspLI | GGNNCC | 5 cut(s) | 226, 357, 748, 820, 960 |
| BspMI | ACCTGC | 1 cut(s) | 664 |
| BspOI | GCTAGC | 1 cut(s) | 266 |
| BspPI | GGATC | 4 cut(s) | 283, 365, 1032, 1092 |
| BspT107I | GGYRCC | 1 cut(s) | 355 |
| BspTNI | GGTCTC | 1 cut(s) | 646 |
| BsrBI | CCGCTC | 1 cut(s) | 733 |
| BsrDI | GCAATG | 1 cut(s) | 957 |
| BsrI | ACTGG | 1 cut(s) | 184 |
| BssECI | CCNNGG | 7 cut(s) | 298, 408, 513, 556, 695, 914, 945 |
| BssMI | GATC | 9 cut(s) | 54, 77, 188, 275, 370, 885, 1011, 1024, 1084 |
| BssSI | CACGAG | 1 cut(s) | 872 |
| BssT1I | CCWWGG | 4 cut(s) | 408, 513, 556, 945 |
| Bst2BI | CACGAG | 1 cut(s) | 872 |
| Bst2UI | CCWGG | 3 cut(s) | 16, 697, 1022 |
| Bst4CI | ACNGT | 3 cut(s) | 217, 524, 1174 |
| Bst6I | CTCTTC | 1 cut(s) | 433 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 602 |
| BstC8I | GCNNGC | 2 cut(s) | 169, 264 |
| BstDEI | CTNAG | 8 cut(s) | 74, 147, 304, 492, 590, 609, 636, 1008 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 297 |
| BstF5I | GGATG | 1 cut(s) | 817 |
| BstKTI | GATC | 9 cut(s) | 57, 80, 191, 278, 373, 888, 1014, 1027, 1087 |
| BstMAI | GTCTC | 4 cut(s) | 97, 443, 646, 960 |
| BstMBI | GATC | 9 cut(s) | 54, 77, 188, 275, 370, 885, 1011, 1024, 1084 |
| BstMCI | CGRYCG | 1 cut(s) | 1125 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 404, 509, 602, 614, 797, 956 |
| BstNI | CCWGG | 3 cut(s) | 16, 697, 1022 |
| BstSCI | CCNGG | 3 cut(s) | 14, 695, 1020 |
| BstSFI | CTRYAG | 1 cut(s) | 213 |
| BstV1I | GCAGC | 7 cut(s) | 268, 271, 589, 592, 772, 775, 787 |
| BstV2I | GAAGAC | 3 cut(s) | 126, 390, 684 |
| BstX2I | RGATCY | 3 cut(s) | 188, 1011, 1084 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 952 |
| BstYI | RGATCY | 3 cut(s) | 188, 1011, 1084 |
| Bsu36I | CCTNAGG | 1 cut(s) | 636 |
| BsuRI | GGCC | 4 cut(s) | 34, 407, 512, 913 |
| BtsCI | GGATG | 1 cut(s) | 817 |
| BtsI | GCAGTG | 1 cut(s) | 629 |
| BtsIMutI | CAGTG | 2 cut(s) | 629, 1183 |
| BveI | ACCTGC | 1 cut(s) | 664 |
| Cac8I | GCNNGC | 2 cut(s) | 169, 264 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1087 |
| CciI | TCATGA | 1 cut(s) | 648 |
| Cfr13I | GGNCC | 3 cut(s) | 851, 1090, 1154 |
| Csp6I | GTAC | 4 cut(s) | 177, 356, 445, 672 |
| CviAII | CATG | 6 cut(s) | 403, 649, 664, 826, 889, 973 |
| CviQI | GTAC | 4 cut(s) | 177, 356, 445, 672 |
| DdeI | CTNAG | 8 cut(s) | 74, 147, 304, 492, 590, 609, 636, 1008 |
| DpnI | GATC | 9 cut(s) | 56, 79, 190, 277, 372, 887, 1013, 1026, 1086 |
| DpnII | GATC | 9 cut(s) | 54, 77, 188, 275, 370, 885, 1011, 1024, 1084 |
| EaeI | YGGCCR | 2 cut(s) | 405, 510 |
| Eam1104I | CTCTTC | 1 cut(s) | 433 |
| EarI | CTCTTC | 1 cut(s) | 433 |
| Eco130I | CCWWGG | 4 cut(s) | 408, 513, 556, 945 |
| Eco31I | GGTCTC | 1 cut(s) | 646 |
| Eco32I | GATATC | 1 cut(s) | 1118 |
| Eco47I | GGWCC | 3 cut(s) | 851, 1090, 1154 |
| Eco81I | CCTNAGG | 1 cut(s) | 636 |
| Eco88I | CYCGRG | 1 cut(s) | 963 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 297 |
| EcoRII | CCWGG | 3 cut(s) | 14, 695, 1020 |
| EcoRV | GATATC | 1 cut(s) | 1118 |
| EcoT14I | CCWWGG | 4 cut(s) | 408, 513, 556, 945 |
| ErhI | CCWWGG | 4 cut(s) | 408, 513, 556, 945 |
| FaeI | CATG | 6 cut(s) | 406, 652, 667, 829, 892, 976 |
| FaqI | GGGAC | 4 cut(s) | 124, 171, 971, 1082 |
| FatI | CATG | 6 cut(s) | 402, 648, 663, 825, 888, 972 |
| FauI | CCCGC | 1 cut(s) | 738 |
| Fnu4HI | GCNGC | 8 cut(s) | 257, 260, 603, 606, 786, 789, 801, 957 |
| FokI | GGATG | 1 cut(s) | 824 |
| Fsp4HI | GCNGC | 8 cut(s) | 257, 260, 603, 606, 786, 789, 801, 957 |
| FspBI | CTAG | 2 cut(s) | 263, 557 |
| GluI | GCNGC | 8 cut(s) | 257, 260, 603, 606, 786, 789, 801, 957 |
| GsuI | CTGGAG | 1 cut(s) | 805 |
| HaeIII | GGCC | 4 cut(s) | 34, 407, 512, 913 |
| HapII | CCGG | 1 cut(s) | 1121 |
| Hin1II | CATG | 6 cut(s) | 406, 652, 667, 829, 892, 976 |
| HindIII | AAGCTT | 1 cut(s) | 926 |
| HinfI | GANTC | 6 cut(s) | 90, 311, 386, 478, 684, 901 |
| HpaII | CCGG | 1 cut(s) | 1121 |
| HphI | GGTGA | 2 cut(s) | 92, 988 |
| Hpy166II | GTNNAC | 1 cut(s) | 979 |
| Hpy188I | TCNGA | 6 cut(s) | 44, 77, 299, 307, 1011, 1063 |
| Hpy8I | GTNNAC | 1 cut(s) | 979 |
| Hpy99I | CGWCG | 1 cut(s) | 44 |
| HpyAV | CCTTC | 2 cut(s) | 588, 1105 |
| HpyCH4III | ACNGT | 3 cut(s) | 217, 524, 1174 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 256, 503, 659, 1037 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 404, 509, 602, 614, 797, 956 |
| HpyF3I | CTNAG | 8 cut(s) | 74, 147, 304, 492, 590, 609, 636, 1008 |
| Hsp92II | CATG | 6 cut(s) | 406, 652, 667, 829, 892, 976 |
| KpnI | GGTACC | 1 cut(s) | 359 |
| Kzo9I | GATC | 9 cut(s) | 54, 77, 188, 275, 370, 885, 1011, 1024, 1084 |
| LmnI | GCTCC | 5 cut(s) | 47, 224, 560, 824, 964 |
| Lsp1109I | GCAGC | 7 cut(s) | 268, 271, 589, 592, 772, 775, 787 |
| LweI | GCATC | 1 cut(s) | 463 |
| MaeI | CTAG | 2 cut(s) | 263, 557 |
| MalI | GATC | 9 cut(s) | 56, 79, 190, 277, 372, 887, 1013, 1026, 1086 |
| MbiI | CCGCTC | 1 cut(s) | 733 |
| MboI | GATC | 9 cut(s) | 54, 77, 188, 275, 370, 885, 1011, 1024, 1084 |
| MboII | GAAGA | 9 cut(s) | 57, 60, 126, 183, 395, 450, 482, 689, 1006 |
| MfeI | CAATTG | 1 cut(s) | 939 |
| MflI | RGATCY | 3 cut(s) | 188, 1011, 1084 |
| MlsI | TGGCCA | 2 cut(s) | 407, 512 |
| MluCI | AATT | 8 cut(s) | 118, 365, 432, 457, 755, 842, 939, 1106 |
| MluNI | TGGCCA | 2 cut(s) | 407, 512 |
| MlyI | GAGTC | 3 cut(s) | 99, 305, 380 |
| MmeI | TCCRAC | 1 cut(s) | 22 |
| Mox20I | TGGCCA | 2 cut(s) | 407, 512 |
| MscI | TGGCCA | 2 cut(s) | 407, 512 |
| MseI | TTAA | 2 cut(s) | 393, 711 |
| MslI | CAYNNNNRTG | 1 cut(s) | 105 |
| Msp20I | TGGCCA | 2 cut(s) | 407, 512 |
| MspI | CCGG | 1 cut(s) | 1121 |
| MspR9I | CCNGG | 3 cut(s) | 16, 697, 1022 |
| MunI | CAATTG | 1 cut(s) | 939 |
| Mva1269I | GAATGC | 1 cut(s) | 591 |
| MvaI | CCWGG | 3 cut(s) | 16, 697, 1022 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 404, 509, 602, 614, 797, 956 |
| NdeII | GATC | 9 cut(s) | 54, 77, 188, 275, 370, 885, 1011, 1024, 1084 |
| NheI | GCTAGC | 1 cut(s) | 262 |
| NlaIII | CATG | 6 cut(s) | 406, 652, 667, 829, 892, 976 |
| NlaIV | GGNNCC | 5 cut(s) | 226, 357, 748, 820, 960 |
| PaeR7I | CTCGAG | 1 cut(s) | 963 |
| PagI | TCATGA | 1 cut(s) | 648 |
| PctI | GAATGC | 1 cut(s) | 591 |
| PfeI | GAWTC | 3 cut(s) | 478, 684, 901 |
| PflFI | GACNNNGTC | 1 cut(s) | 1094 |
| PfoI | TCCNGGA | 1 cut(s) | 14 |
| PkrI | GCNGC | 8 cut(s) | 258, 261, 604, 607, 787, 790, 802, 958 |
| PleI | GAGTC | 3 cut(s) | 98, 305, 380 |
| PpsI | GAGTC | 3 cut(s) | 98, 305, 380 |
| Psp6I | CCWGG | 3 cut(s) | 14, 695, 1020 |
| PspGI | CCWGG | 3 cut(s) | 14, 695, 1020 |
| PspN4I | GGNNCC | 5 cut(s) | 226, 357, 748, 820, 960 |
| PspPI | GGNCC | 3 cut(s) | 851, 1090, 1154 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1087 |
| PsuI | RGATCY | 3 cut(s) | 188, 1011, 1084 |
| PsyI | GACNNNGTC | 1 cut(s) | 1094 |
| RsaI | GTAC | 4 cut(s) | 178, 357, 446, 673 |
| RsaNI | GTAC | 4 cut(s) | 177, 356, 445, 672 |
| RseI | CAYNNNNRTG | 1 cut(s) | 105 |
| SaqAI | TTAA | 2 cut(s) | 393, 711 |
| SatI | GCNGC | 8 cut(s) | 257, 260, 603, 606, 786, 789, 801, 957 |
| Sau3AI | GATC | 9 cut(s) | 54, 77, 188, 275, 370, 885, 1011, 1024, 1084 |
| Sau96I | GGNCC | 3 cut(s) | 851, 1090, 1154 |
| SchI | GAGTC | 3 cut(s) | 99, 305, 380 |
| ScrFI | CCNGG | 3 cut(s) | 16, 697, 1022 |
| SfaNI | GCATC | 1 cut(s) | 463 |
| SfcI | CTRYAG | 1 cut(s) | 213 |
| Sfr274I | CTCGAG | 1 cut(s) | 963 |
| SinI | GGWCC | 3 cut(s) | 851, 1090, 1154 |
| SlaI | CTCGAG | 1 cut(s) | 963 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 105 |
| SmlI | CTYRAG | 2 cut(s) | 326, 963 |
| SmoI | CTYRAG | 2 cut(s) | 326, 963 |
| Sse9I | AATT | 8 cut(s) | 118, 365, 432, 457, 755, 842, 939, 1106 |
| SsiI | CCGC | 2 cut(s) | 731, 956 |
| SspMI | CTAG | 2 cut(s) | 263, 557 |
| StyD4I | CCNGG | 3 cut(s) | 14, 695, 1020 |
| StyI | CCWWGG | 4 cut(s) | 408, 513, 556, 945 |
| TaaI | ACNGT | 3 cut(s) | 217, 524, 1174 |
| TaqI | TCGA | 5 cut(s) | 53, 319, 389, 964, 1125 |
| TasI | AATT | 8 cut(s) | 118, 365, 432, 457, 755, 842, 939, 1106 |
| TauI | GCSGC | 1 cut(s) | 959 |
| TfiI | GAWTC | 3 cut(s) | 478, 684, 901 |
| Tru1I | TTAA | 2 cut(s) | 393, 711 |
| Tru9I | TTAA | 2 cut(s) | 393, 711 |
| TscAI | CASTG | 2 cut(s) | 636, 1183 |
| TseI | GCWGC | 7 cut(s) | 256, 259, 602, 605, 785, 788, 800 |
| TspDTI | ATGAA | 4 cut(s) | 51, 377, 396, 961 |
| TspGWI | ACGGA | 3 cut(s) | 102, 184, 921 |
| TspRI | CASTG | 2 cut(s) | 636, 1183 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1094 |
| VpaK11BI | GGWCC | 3 cut(s) | 851, 1090, 1154 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 297 |
| XapI | RAATTY | 3 cut(s) | 365, 457, 755 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 235, 874 |
| XhoI | CTCGAG | 1 cut(s) | 963 |
| XmaJI | CCTAGG | 1 cut(s) | 556 |
| XspI | CTAG | 2 cut(s) | 263, 557 |