Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004816.1

Orthogroup ID

OG0009359

Physical Location & Seq

Genomic Coordinates Reverse (-)

76558 .. 80611

Gene Structure 4054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004816.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

atgcaggcgattacgaggcgcgctgggcagcgatatctgaatccctcatcgtcgctcaagtcaatctaccctctctccgatcaccattatggagctgagcgtcccaagtacggatctagcctcgccactaagggagtggggcaccttgtacgcaagggcacgggtggaagatcatctgttagtggcattgtggctgcagttttcggatctactgggttccttggtcgatatcttgtacaacaactcgccaaaatgggaagccaggtattagttccgttccgtggttctgaagattcccatcgtcatctcaagttgatgggagatttgggacagatagtaccaatgaaatacaatccaagagatgaaaactcaattaaggcggtaatggcgaaagctaatgtggttatcaatcttattggtagagagtatgagacaagaaactttagctttgaggaagtgaatcattccatggctgaacaacttgcaatgatttccaaagaacatgggggtatcatgagatttattcaagtttcttgcttaggggcatctccctcatcaccatccagatatctaaaggctaaagctactgcagagggtgctgttttaagtgaactaccagaggccacaattatgagacctgctgtgatgattggtacagaggatcgaattttgaatcggtgggcccatgtttcaaaaaaatatggctttcttccacttgttggggatgggtctaccaaaatccaacctgtatatgttgctgatgttgctggtgcaattgtttctgccctgcaagatgatggcacaagtatgggaaaagtttatgaacttggtgggcctgaggtctatacagtgcaccaattggcagaagttatgtttgacatgatccgagaatggccacactacgtgaagattcctctcccaatcgctaaggcaattgcaatgccacgagaaatactgcttaaaaaagttccgttcccattgccaaatcctgaaatcttcaacctagatcaaatccttgcccaagcttcagatacagttgtttcagaaaatgccttgactttcaatgatcttggaattcttccccataagatcaagggctaccctattgagtttcttatccaatatcgtaagggaggcccaaactttggttcgacaagtgcaaccctcttggagactgaatcaggttttcagaggctgccttcttctgttgagaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009628 GO:0009651 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0070469 GO:0071704 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Epimerase NAD_binding_10 NmrA

Protein Analysis

405

Amino Acids

44.33

Weight (kDa)

9.29

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20360
fragaria_vesca	FvH4_2g20370 FvH4_2g20370 FvH4_2g20370
malus_domestica	MD05G1187700.v1.1 MD10G1175400.v1.1
prunus_persica	Prupe.8G214700_v2.0.a1 Prupe.8G214700_v2.0.a1 Prupe.8G214700_v2.0.a1
pyrus_communis	pycom05g17250 pycom10g15110 pycom10g15120
rosa_chinensis	RchiOBHm_Chr6g0286481
rosa_laevigata	RLG00000012568
rosa_multiflora	Rmu_sc0004816.1_g000013 Rmu_sc0005089.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182300
rosa_rugosa	Rorug06G0180100
rosa_samantha	Rh6AG292300 Rh6CG296600 Rh6DG288400
rosa_wichuraiana	Rw6G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	646
AccB1I	GGYRCC	1 cut(s)	141
AccB7I	CCANNNNNTGG	2 cut(s)	719, 1145
AccI	GTMKAC	1 cut(s)	731
AccII	CGCG	1 cut(s)	21
AciI	CCGC	1 cut(s)	380
AclWI	GGATC	4 cut(s)	121, 214, 669, 877
AcoI	YGGCCR	1 cut(s)	893
AcsI	RAATTY	2 cut(s)	666, 1074
AcuI	CTGAAG	2 cut(s)	309, 1011
AdeI	CACNNNGTG	1 cut(s)	904
AfaI	GTAC	5 cut(s)	110, 150, 237, 339, 655
AfiI	CCNNNNNNNGG	4 cut(s)	110, 281, 719, 1145
AgsI	TTSAA	5 cut(s)	527, 673, 693, 1000, 1063
AjnI	CCWGG	1 cut(s)	261
AjuI	GAANNNNNNNTTGG	2 cut(s)	1132, 1164
AluBI	AGCT	5 cut(s)	95, 395, 447, 584, 1025
AluI	AGCT	5 cut(s)	95, 395, 447, 584, 1025
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	3 cut(s)	425, 628, 1166
Alw44I	GTGCAC	1 cut(s)	851
AlwI	GGATC	4 cut(s)	121, 214, 669, 877
AlwNI	CAGNNNCTG	1 cut(s)	1195
AoxI	GGCC	5 cut(s)	621, 681, 833, 893, 1135
ApaI	GGGCCC	1 cut(s)	685
ApaLI	GTGCAC	1 cut(s)	851
ApeKI	GCWGC	3 cut(s)	28, 194, 1195
ApoI	RAATTY	2 cut(s)	666, 1074
AspLEI	GCGC	2 cut(s)	21, 23
AspS9I	GGNCC	4 cut(s)	681, 682, 833, 1136
AsuHPI	GGTGA	2 cut(s)	74, 549
AxyI	CCTNAGG	1 cut(s)	837
BaeGI	GKGCMC	4 cut(s)	144, 161, 685, 855
BaeI	ACNNNNGTAYC	2 cut(s)	1023, 1056
BalI	TGGCCA	1 cut(s)	895
BanI	GGYRCC	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	685
BauI	CACGAG	1 cut(s)	945
Bbv12I	GWGCWC	1 cut(s)	855
BbvI	GCAGC	3 cut(s)	40, 181, 1182
BccI	CCATC	5 cut(s)	306, 310, 568, 719, 791
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	3 cut(s)	425, 628, 1166
BfaI	CTAG	2 cut(s)	117, 1004
BfmI	CTRYAG	2 cut(s)	195, 588
BfuAI	ACCTGC	1 cut(s)	646
BisI	GCNGC	3 cut(s)	29, 195, 1196
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	3 cut(s)	30, 196, 1197
Bme1390I	CCNGG	1 cut(s)	263
BmgT120I	GGNCC	4 cut(s)	681, 682, 833, 1136
BmiI	GGNNCC	3 cut(s)	143, 218, 683
BmrFI	CCNGG	1 cut(s)	263
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	554
BmuI	ACTGGG	1 cut(s)	222
Bpu10I	CCTNAGC	2 cut(s)	538, 927
Bpu1102I	GCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	41, 293
BsaAI	YACGTR	1 cut(s)	904
BsaBI	GATNNNNATC	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	628
BsaJI	CCNNGG	3 cut(s)	220, 280, 468
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 281, 719, 1145
Bse1I	ACTGG	1 cut(s)	217
Bse21I	CCTNAGG	1 cut(s)	837
Bse3DI	GCAATG	3 cut(s)	492, 945, 977
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	3 cut(s)	220, 280, 468
BseGI	GGATG	2 cut(s)	560, 730
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	4 cut(s)	110, 281, 719, 1145
BseMI	GCAATG	3 cut(s)	492, 945, 977
BseMII	CTCAG	2 cut(s)	87, 828
BseNI	ACTGG	1 cut(s)	217
BsePI	GCGCGC	1 cut(s)	19
BseSI	GKGCMC	4 cut(s)	144, 161, 685, 855
BseXI	GCAGC	3 cut(s)	40, 181, 1182
BseYI	CCCAGC	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	5 cut(s)	623, 683, 835, 895, 1137
BshNI	GGYRCC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	855
BslFI	GGGAC	2 cut(s)	87, 342
BslI	CCNNNNNNNGG	4 cut(s)	110, 281, 719, 1145
BsmAI	GTCTC	3 cut(s)	425, 628, 1166
BsmFI	GGGAC	2 cut(s)	87, 342
BsnI	GGCC	5 cut(s)	623, 683, 835, 895, 1137
Bso31I	GGTCTC	1 cut(s)	628
Bsp120I	GGGCCC	1 cut(s)	681
Bsp1286I	GDGCHC	4 cut(s)	144, 161, 685, 855
Bsp1407I	TGTACA	1 cut(s)	235
Bsp143I	GATC	9 cut(s)	79, 113, 170, 206, 661, 882, 1006, 1066, 1089
Bsp1720I	GCTNAGC	1 cut(s)	96
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	5 cut(s)	623, 683, 835, 895, 1137
BspCNI	CTCAG	2 cut(s)	88, 829
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	3 cut(s)	143, 218, 683
BspMAI	CTGCAG	2 cut(s)	199, 592
BspMI	ACCTGC	1 cut(s)	646
BspPI	GGATC	4 cut(s)	121, 214, 669, 877
BspT107I	GGYRCC	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	628
BsrDI	GCAATG	3 cut(s)	492, 945, 977
BsrGI	TGTACA	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	220, 280, 468
BssHII	GCGCGC	1 cut(s)	19
BssMI	GATC	9 cut(s)	79, 113, 170, 206, 661, 882, 1006, 1066, 1089
BssSI	CACGAG	1 cut(s)	945
BssT1I	CCWWGG	2 cut(s)	220, 468
Bst2BI	CACGAG	1 cut(s)	945
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	850, 1036
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstAUI	TGTACA	1 cut(s)	235
BstBAI	YACGTR	1 cut(s)	904
BstC8I	GCNNGC	2 cut(s)	6, 21
BstDEI	CTNAG	5 cut(s)	96, 129, 538, 837, 927
BstDSI	CCRYGG	2 cut(s)	280, 468
BstF5I	GGATG	2 cut(s)	560, 730
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	21, 23
BstKTI	GATC	9 cut(s)	82, 116, 173, 209, 664, 885, 1009, 1069, 1092
BstMAI	GTCTC	3 cut(s)	425, 628, 1166
BstMBI	GATC	9 cut(s)	79, 113, 170, 206, 661, 882, 1006, 1066, 1089
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 386, 596, 764
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	2 cut(s)	195, 588
BstSLI	GKGCMC	4 cut(s)	144, 161, 685, 855
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	40, 181, 1182
BstX2I	RGATCY	2 cut(s)	113, 206
BstYI	RGATCY	2 cut(s)	113, 206
Bsu36I	CCTNAGG	1 cut(s)	837
BsuRI	GGCC	5 cut(s)	623, 683, 835, 895, 1137
BtgI	CCRYGG	2 cut(s)	280, 468
BtsCI	GGATG	2 cut(s)	560, 730
BtsIMutI	CAGTG	1 cut(s)	855
BveI	ACCTGC	1 cut(s)	646
Cac8I	GCNNGC	2 cut(s)	6, 21
CaiI	CAGNNNCTG	1 cut(s)	1195
CciI	TCATGA	1 cut(s)	513
CfoI	GCGC	2 cut(s)	21, 23
Cfr13I	GGNCC	4 cut(s)	681, 682, 833, 1136
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	5 cut(s)	109, 149, 236, 338, 654
CviAII	CATG	5 cut(s)	469, 503, 514, 686, 880
CviQI	GTAC	5 cut(s)	109, 149, 236, 338, 654
DdeI	CTNAG	5 cut(s)	96, 129, 538, 837, 927
DpnI	GATC	9 cut(s)	81, 115, 172, 208, 663, 884, 1008, 1068, 1091
DpnII	GATC	9 cut(s)	79, 113, 170, 206, 661, 882, 1006, 1066, 1089
DraIII	CACNNNGTG	1 cut(s)	904
EaeI	YGGCCR	1 cut(s)	893
Eco130I	CCWWGG	2 cut(s)	220, 468
Eco24I	GRGCYC	1 cut(s)	685
Eco31I	GGTCTC	1 cut(s)	628
Eco32I	GATATC	3 cut(s)	35, 230, 569
Eco57I	CTGAAG	2 cut(s)	309, 1011
Eco81I	CCTNAGG	1 cut(s)	837
EcoRI	GAATTC	1 cut(s)	1074
EcoRII	CCWGG	1 cut(s)	261
EcoRV	GATATC	3 cut(s)	35, 230, 569
EcoT14I	CCWWGG	2 cut(s)	220, 468
EcoT38I	GRGCYC	1 cut(s)	685
ErhI	CCWWGG	2 cut(s)	220, 468
FaeI	CATG	5 cut(s)	472, 506, 517, 689, 883
FaqI	GGGAC	2 cut(s)	87, 342
FatI	CATG	5 cut(s)	468, 502, 513, 685, 879
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	3 cut(s)	29, 195, 1196
FokI	GGATG	2 cut(s)	547, 737
FriOI	GRGCYC	1 cut(s)	685
Fsp4HI	GCNGC	3 cut(s)	29, 195, 1196
FspBI	CTAG	2 cut(s)	117, 1004
GlaI	GCGC	2 cut(s)	20, 22
GluI	GCNGC	3 cut(s)	29, 195, 1196
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	5 cut(s)	623, 683, 835, 895, 1137
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	2 cut(s)	21, 23
Hin1II	CATG	5 cut(s)	472, 506, 517, 689, 883
Hin6I	GCGC	2 cut(s)	19, 21
HinP1I	GCGC	2 cut(s)	19, 21
HindIII	AAGCTT	1 cut(s)	1023
HinfI	GANTC	6 cut(s)	40, 293, 460, 673, 910, 1178
HphI	GGTGA	2 cut(s)	74, 549
Hpy166II	GTNNAC	3 cut(s)	611, 732, 853
Hpy188I	TCNGA	8 cut(s)	39, 79, 206, 289, 887, 1030, 1045, 1191
Hpy188III	TCNNGA	3 cut(s)	514, 564, 989
Hpy8I	GTNNAC	3 cut(s)	611, 732, 853
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	1209
HpyCH4III	ACNGT	2 cut(s)	850, 1036
HpyCH4IV	ACGT	1 cut(s)	903
HpyCH4V	TGCA	9 cut(s)	4, 197, 485, 590, 773, 790, 853, 938, 1160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 386, 596, 764
HpyF3I	CTNAG	5 cut(s)	96, 129, 538, 837, 927
HpySE526I	ACGT	1 cut(s)	903
Hsp92II	CATG	5 cut(s)	472, 506, 517, 689, 883
HspAI	GCGC	2 cut(s)	19, 21
Kzo9I	GATC	9 cut(s)	79, 113, 170, 206, 661, 882, 1006, 1066, 1089
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	3 cut(s)	40, 181, 1182
LweI	GCATC	1 cut(s)	554
MaeI	CTAG	2 cut(s)	117, 1004
MaeII	ACGT	1 cut(s)	903
MalI	GATC	9 cut(s)	81, 115, 172, 208, 663, 884, 1008, 1068, 1091
MboI	GATC	9 cut(s)	79, 113, 170, 206, 661, 882, 1006, 1066, 1089
MboII	GAAGA	7 cut(s)	180, 302, 701, 919, 988, 1070, 1194
MfeI	CAATTG	3 cut(s)	774, 857, 933
MflI	RGATCY	2 cut(s)	113, 206
MhlI	GDGCHC	4 cut(s)	144, 161, 685, 855
MlsI	TGGCCA	1 cut(s)	895
MluCI	AATT	7 cut(s)	372, 627, 666, 774, 857, 933, 1074
MluNI	TGGCCA	1 cut(s)	895
MmeI	TCCRAC	1 cut(s)	766
Mox20I	TGGCCA	1 cut(s)	895
MscI	TGGCCA	1 cut(s)	895
MseI	TTAA	3 cut(s)	375, 605, 960
MslI	CAYNNNNRTG	3 cut(s)	87, 629, 806
Msp20I	TGGCCA	1 cut(s)	895
MspR9I	CCNGG	1 cut(s)	263
MunI	CAATTG	3 cut(s)	774, 857, 933
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	4 cut(s)	25, 386, 596, 764
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	9 cut(s)	79, 113, 170, 206, 661, 882, 1006, 1066, 1089
NlaIII	CATG	5 cut(s)	472, 506, 517, 689, 883
NlaIV	GGNNCC	3 cut(s)	143, 218, 683
PagI	TCATGA	1 cut(s)	513
PauI	GCGCGC	1 cut(s)	19
PfeI	GAWTC	6 cut(s)	40, 293, 460, 673, 910, 1178
PflMI	CCANNNNNTGG	2 cut(s)	719, 1145
PkrI	GCNGC	3 cut(s)	30, 196, 1197
Ppu21I	YACGTR	1 cut(s)	904
Psp6I	CCWGG	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	3 cut(s)	143, 218, 683
PspOMI	GGGCCC	1 cut(s)	681
PspPI	GGNCC	4 cut(s)	681, 682, 833, 1136
PstI	CTGCAG	2 cut(s)	199, 592
PstNI	CAGNNNCTG	1 cut(s)	1195
PsuI	RGATCY	2 cut(s)	113, 206
PteI	GCGCGC	1 cut(s)	19
RsaI	GTAC	5 cut(s)	110, 150, 237, 339, 655
RsaNI	GTAC	5 cut(s)	109, 149, 236, 338, 654
RseI	CAYNNNNRTG	3 cut(s)	87, 629, 806
SaqAI	TTAA	3 cut(s)	375, 605, 960
SatI	GCNGC	3 cut(s)	29, 195, 1196
Sau3AI	GATC	9 cut(s)	79, 113, 170, 206, 661, 882, 1006, 1066, 1089
Sau96I	GGNCC	4 cut(s)	681, 682, 833, 1136
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	4 cut(s)	144, 161, 685, 855
SfaNI	GCATC	1 cut(s)	554
SfcI	CTRYAG	2 cut(s)	195, 588
SmiMI	CAYNNNNRTG	3 cut(s)	87, 629, 806
SmlI	CTYRAG	2 cut(s)	56, 308
SmoI	CTYRAG	2 cut(s)	56, 308
Sse9I	AATT	7 cut(s)	372, 627, 666, 774, 857, 933, 1074
SsiI	CCGC	1 cut(s)	380
SspMI	CTAG	2 cut(s)	117, 1004
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	2 cut(s)	220, 468
TaaI	ACNGT	2 cut(s)	850, 1036
TaiI	ACGT	1 cut(s)	906
TaqI	TCGA	3 cut(s)	226, 664, 1151
TasI	AATT	7 cut(s)	372, 627, 666, 774, 857, 933, 1074
TatI	WGTACW	1 cut(s)	235
TfiI	GAWTC	6 cut(s)	40, 293, 460, 673, 910, 1178
Tru1I	TTAA	3 cut(s)	375, 605, 960
Tru9I	TTAA	3 cut(s)	375, 605, 960
TscAI	CASTG	1 cut(s)	855
TseI	GCWGC	3 cut(s)	28, 194, 1195
TspDTI	ATGAA	3 cut(s)	359, 378, 837
TspGWI	ACGGA	4 cut(s)	126, 264, 269, 960
TspRI	CASTG	1 cut(s)	855
Van91I	CCANNNNNTGG	2 cut(s)	719, 1145
VneI	GTGCAC	1 cut(s)	851
XapI	RAATTY	2 cut(s)	666, 1074
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	731
XspI	CTAG	2 cut(s)	117, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.