Prupe.8G214700_v2.0.a1

NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
19742096 .. 19746101
4006 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G214700.2

Sequence Viewer

Length: 1200 bp
ATGCAGGCCATTTCGAAGCGTGTCGGGCACCAATACCTGACTCCCTCGTCTTCAATCTCGTTGCTCAAGTCAATCTACCCTGTTTCCGATCACTATTATGGAGCTGATCGTCCGAAGTACGGATCTACCCTCGCCACTAAGGGAGTGGGGCACCTTGTGCGCAAGGGCACAGGTGGAAGATCATCTGTTAGTGGCATTGTTGCTGCAGTTTTTGGATCTACAGGGTTCCTTGGTCGTTATCTTGTACAACAACTTGCCAAAATGGGAAGTCAGGTGTTAGTTCCTTTCCGTGGTTCTGAGGATTCCCATCGTCATCTGAAGTTGATGGGGGATTTGGGACAGATAGTACCTATGAAATACAATCCGAGAGATGAAGATTCAATTAAGGCAGTCATGGCGAAAGCTAATGTGGTTATCAATCTCATTGGGAGGGATTATGAGACAAGAAACTTTAGCTTTGAGGAAGTGAATCATTCCATGGCCGAACAACTGGCAACGATTTCCAAGGAACACGGTGGTATCATGAGATTTATTCAAGTGTCTTGCTTAGGGGCATCTTCCTCGTCACCCTCCAGATTTCTAAGGGCTAAAGCTGCTGCAGAGGAAGCAGTATTACGTGAATTGCCAGAGGCCACTGTTTTGAGACCTGCTGTGCTGATTGGTACGGAGGACCGAATTTTGAATCGCTGGGCCTTTTTTGCGAAGAAATATGGCTTTCTTCCACTTATTGGGGATGGATCTACCAAAATCCAACCTGTATATGTTGTTGATGTTGCTGGGGCAATCGTGGCAGCCTTGAAGGATGATGGCACCAGCATGGGAAAAGTTTATGAACTTGGTGGGCCTGAGGTCTTTACAGTGCATCAATTGGCAGAGCTAATGTTTGAGACAATACGTGAATGGCCTCACTACGTGAAGGTTCCTCTCCCAATTGCAAAGGCAATTGCAGCGCCTCGAGAAATATTACTAAATAAAGTTCCATTTCCATTACCTAATCCTGAAATCTTCAACCGAGATCAAATCCTTGCCCAAGCTACGGATACAGTCGTCTCAGAAAATTCTTTGACTTTCAGTGATCTTGGACTTGTGCCCCATAAGCTGAAGGGTTACCCTGTTGAGTTTCTTATCCAATATCGTAAGGGTGGCCCGAATTATGGTTCTACAGTCAGTGAAAGAGTGTCTCCAGATGCTTGGCCATGA

Protein Analysis

400

Amino Acids

43.68

Weight (kDa)

9.21

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
Acc16I TGCGCA 1 cut(s) 161
Acc36I ACCTGC 1 cut(s) 655
AccB1I GGYRCC 3 cut(s) 27, 150, 809
AccB7I CCANNNNNTGG 1 cut(s) 728
AclWI GGATC 3 cut(s) 130, 223, 745
AcoI YGGCCR 2 cut(s) 480, 1193
AcsI RAATTY 2 cut(s) 675, 1057
AcuI CTGAAG 2 cut(s) 338, 1121
AdeI CACNNNGTG 2 cut(s) 157, 913
AfaI GTAC 4 cut(s) 119, 246, 348, 664
AfiI CCNNNNNNNGG 5 cut(s) 119, 290, 728, 1036, 1154
AgsI TTSAA 6 cut(s) 54, 381, 536, 682, 799, 1009
AluBI AGCT 7 cut(s) 104, 404, 456, 593, 877, 1034, 1099
AluI AGCT 7 cut(s) 104, 404, 456, 593, 877, 1034, 1099
Alw26I GTCTC 5 cut(s) 434, 637, 881, 1054, 1185
AlwI GGATC 3 cut(s) 130, 223, 745
Ama87I CYCGRG 1 cut(s) 954
AoxI GGCC 8 cut(s) 6, 480, 630, 690, 842, 902, 1144, 1193
ApeKI GCWGC 5 cut(s) 203, 593, 596, 791, 947
ApoI RAATTY 2 cut(s) 675, 1057
AspLEI GCGC 2 cut(s) 162, 952
AspS9I GGNCC 4 cut(s) 670, 690, 842, 1145
AsuHPI GGTGA 1 cut(s) 558
AsuII TTCGAA 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 954
AvaII GGWCC 1 cut(s) 670
AxyI CCTNAGG 1 cut(s) 846
BaeGI GKGCMC 4 cut(s) 30, 153, 170, 1092
BaeI ACNNNNGTAYC 4 cut(s) 502, 535, 1032, 1065
BalI TGGCCA 1 cut(s) 1195
BanI GGYRCC 3 cut(s) 27, 150, 809
BarI GAAGNNNNNNTAC 2 cut(s) 597, 629
BbsI GAAGAC 1 cut(s) 42
BbvI GCAGC 5 cut(s) 190, 580, 583, 803, 959
BccI CCATC 4 cut(s) 315, 319, 728, 800
BcgI CGANNNNNNTGC 2 cut(s) 543, 577
BciVI GTATCC 1 cut(s) 1033
BcoDI GTCTC 5 cut(s) 434, 637, 881, 1054, 1185
BfmI CTRYAG 4 cut(s) 204, 219, 597, 1161
BfoI RGCGCY 1 cut(s) 953
BfuAI ACCTGC 1 cut(s) 655
BfuI GTATCC 1 cut(s) 1033
BisI GCNGC 5 cut(s) 204, 594, 597, 792, 948
BlsI GCNGC 5 cut(s) 205, 595, 598, 793, 949
Bme18I GGWCC 1 cut(s) 670
BmeT110I CYCGRG 1 cut(s) 954
BmgT120I GGNCC 4 cut(s) 670, 690, 842, 1145
BmiI GGNNCC 5 cut(s) 29, 152, 227, 811, 921
BmsI GCATC 3 cut(s) 563, 871, 1177
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 2 cut(s) 556, 1167
Bpu10I CCTNAGC 1 cut(s) 547
Bpu14I TTCGAA 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 50
BsaAI YACGTR 3 cut(s) 617, 896, 913
BsaBI GATNNNNATC 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 637
BsaJI CCNNGG 4 cut(s) 229, 289, 477, 504
Bsc4I CCNNNNNNNGG 5 cut(s) 119, 290, 728, 1036, 1154
Bse1I ACTGG 1 cut(s) 495
Bse21I CCTNAGG 1 cut(s) 846
Bse8I GATNNNNATC 1 cut(s) 306
BseDI CCNNGG 4 cut(s) 229, 289, 477, 504
BseGI GGATG 2 cut(s) 739, 808
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 5 cut(s) 119, 290, 728, 1036, 1154
BseMII CTCAG 3 cut(s) 288, 837, 1065
BseNI ACTGG 1 cut(s) 495
BseSI GKGCMC 4 cut(s) 30, 153, 170, 1092
BseXI GCAGC 5 cut(s) 190, 580, 583, 803, 959
BseYI CCCAGC 2 cut(s) 687, 776
BshFI GGCC 8 cut(s) 8, 482, 632, 692, 844, 904, 1146, 1195
BshNI GGYRCC 3 cut(s) 27, 150, 809
BsiHKCI CYCGRG 1 cut(s) 954
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 5 cut(s) 119, 290, 728, 1036, 1154
BsmAI GTCTC 5 cut(s) 434, 637, 881, 1054, 1185
BsmBI CGTCTC 1 cut(s) 1054
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 8 cut(s) 8, 482, 632, 692, 844, 904, 1146, 1195
Bso31I GGTCTC 1 cut(s) 637
BsoBI CYCGRG 1 cut(s) 954
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 4 cut(s) 30, 153, 170, 1092
Bsp1407I TGTACA 1 cut(s) 244
Bsp143I GATC 8 cut(s) 88, 106, 122, 179, 215, 737, 1015, 1075
Bsp19I CCATGG 1 cut(s) 477
BspANI GGCC 8 cut(s) 8, 482, 632, 692, 844, 904, 1146, 1195
BspCNI CTCAG 3 cut(s) 289, 838, 1064
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 5 cut(s) 29, 152, 227, 811, 921
BspMAI CTGCAG 2 cut(s) 208, 601
BspMI ACCTGC 1 cut(s) 655
BspPI GGATC 3 cut(s) 130, 223, 745
BspT104I TTCGAA 1 cut(s) 14
BspT107I GGYRCC 3 cut(s) 27, 150, 809
BspTNI GGTCTC 1 cut(s) 637
BsrGI TGTACA 1 cut(s) 244
BsrI ACTGG 1 cut(s) 495
BssECI CCNNGG 4 cut(s) 229, 289, 477, 504
BssMI GATC 8 cut(s) 88, 106, 122, 179, 215, 737, 1015, 1075
BssT1I CCWWGG 3 cut(s) 229, 477, 504
Bst4CI ACNGT 5 cut(s) 515, 637, 859, 1045, 1165
BstAPI GCANNNNNTGC 1 cut(s) 157
BstAUI TGTACA 1 cut(s) 244
BstBAI YACGTR 3 cut(s) 617, 896, 913
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 6 cut(s) 138, 297, 547, 581, 846, 1051
BstDSI CCRYGG 2 cut(s) 289, 477
BstEII GGTNACC 1 cut(s) 1106
BstF5I GGATG 2 cut(s) 739, 808
BstH2I RGCGCY 1 cut(s) 953
BstHHI GCGC 2 cut(s) 162, 952
BstKTI GATC 8 cut(s) 91, 109, 125, 182, 218, 740, 1018, 1078
BstMAI GTCTC 5 cut(s) 434, 637, 881, 1054, 1185
BstMBI GATC 8 cut(s) 88, 106, 122, 179, 215, 737, 1015, 1075
BstMWI GCNNNNNNNGC 9 cut(s) 25, 157, 395, 593, 605, 698, 788, 947, 1096
BstPI GGTNACC 1 cut(s) 1106
BstSFI CTRYAG 4 cut(s) 204, 219, 597, 1161
BstSLI GKGCMC 4 cut(s) 30, 153, 170, 1092
BstV1I GCAGC 5 cut(s) 190, 580, 583, 803, 959
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 3 cut(s) 122, 215, 737
BstXI CCANNNNNNTGG 1 cut(s) 1191
BstYI RGATCY 3 cut(s) 122, 215, 737
Bsu36I CCTNAGG 1 cut(s) 846
BsuI GTATCC 1 cut(s) 1033
BsuRI GGCC 8 cut(s) 8, 482, 632, 692, 844, 904, 1146, 1195
BtgI CCRYGG 2 cut(s) 289, 477
BtsCI GGATG 2 cut(s) 739, 808
BtsIMutI CAGTG 4 cut(s) 633, 864, 1078, 1174
BveI ACCTGC 1 cut(s) 655
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 522
CfoI GCGC 2 cut(s) 162, 952
Cfr13I GGNCC 4 cut(s) 670, 690, 842, 1145
Csp6I GTAC 4 cut(s) 118, 245, 347, 663
CviAII CATG 5 cut(s) 394, 478, 523, 817, 1197
CviQI GTAC 4 cut(s) 118, 245, 347, 663
DdeI CTNAG 6 cut(s) 138, 297, 547, 581, 846, 1051
DpnI GATC 8 cut(s) 90, 108, 124, 181, 217, 739, 1017, 1077
DpnII GATC 8 cut(s) 88, 106, 122, 179, 215, 737, 1015, 1075
DraIII CACNNNGTG 2 cut(s) 157, 913
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 2 cut(s) 480, 1193
Eco130I CCWWGG 3 cut(s) 229, 477, 504
Eco31I GGTCTC 1 cut(s) 637
Eco47I GGWCC 1 cut(s) 670
Eco57I CTGAAG 2 cut(s) 338, 1121
Eco81I CCTNAGG 1 cut(s) 846
Eco88I CYCGRG 1 cut(s) 954
Eco91I GGTNACC 1 cut(s) 1106
EcoO65I GGTNACC 1 cut(s) 1106
EcoT14I CCWWGG 3 cut(s) 229, 477, 504
ErhI CCWWGG 3 cut(s) 229, 477, 504
Esp3I CGTCTC 1 cut(s) 1054
FaeI CATG 5 cut(s) 397, 481, 526, 820, 1200
FaqI GGGAC 1 cut(s) 351
FatI CATG 5 cut(s) 393, 477, 522, 816, 1196
Fnu4HI GCNGC 5 cut(s) 204, 594, 597, 792, 948
FokI GGATG 2 cut(s) 746, 815
Fsp4HI GCNGC 5 cut(s) 204, 594, 597, 792, 948
FspI TGCGCA 1 cut(s) 161
GlaI GCGC 2 cut(s) 161, 951
GluI GCNGC 5 cut(s) 204, 594, 597, 792, 948
GsaI CCCAGC 2 cut(s) 691, 780
GsuI CTGGAG 2 cut(s) 556, 1167
HaeII RGCGCY 1 cut(s) 953
HaeIII GGCC 8 cut(s) 8, 482, 632, 692, 844, 904, 1146, 1195
HhaI GCGC 2 cut(s) 162, 952
Hin1II CATG 5 cut(s) 397, 481, 526, 820, 1200
Hin6I GCGC 2 cut(s) 160, 950
HinP1I GCGC 2 cut(s) 160, 950
HinfI GANTC 5 cut(s) 40, 302, 377, 469, 682
HphI GGTGA 1 cut(s) 558
Hpy188I TCNGA 6 cut(s) 88, 114, 298, 318, 366, 1054
Hpy188III TCNNGA 5 cut(s) 523, 573, 956, 998, 1184
HpyAV CCTTC 3 cut(s) 793, 910, 1096
HpyCH4III ACNGT 5 cut(s) 515, 637, 859, 1045, 1165
HpyCH4IV ACGT 3 cut(s) 616, 895, 912
HpyCH4V TGCA 6 cut(s) 4, 206, 599, 862, 935, 947
HpyF10VI GCNNNNNNNGC 9 cut(s) 25, 157, 395, 593, 605, 698, 788, 947, 1096
HpyF3I CTNAG 6 cut(s) 138, 297, 547, 581, 846, 1051
HpySE526I ACGT 3 cut(s) 616, 895, 912
Hsp92II CATG 5 cut(s) 397, 481, 526, 820, 1200
HspAI GCGC 2 cut(s) 160, 950
Kzo9I GATC 8 cut(s) 88, 106, 122, 179, 215, 737, 1015, 1075
LmnI GCTCC 1 cut(s) 101
Lsp1109I GCAGC 5 cut(s) 190, 580, 583, 803, 959
LweI GCATC 3 cut(s) 563, 871, 1177
MaeII ACGT 3 cut(s) 616, 895, 912
MaeIII GTNAC 2 cut(s) 564, 1106
MalI GATC 8 cut(s) 90, 108, 124, 181, 217, 739, 1017, 1077
MboI GATC 8 cut(s) 88, 106, 122, 179, 215, 737, 1015, 1075
MboII GAAGA 7 cut(s) 42, 189, 386, 549, 710, 715, 997
MfeI CAATTG 3 cut(s) 866, 930, 942
MflI RGATCY 3 cut(s) 122, 215, 737
MhlI GDGCHC 4 cut(s) 30, 153, 170, 1092
MlsI TGGCCA 1 cut(s) 1195
MluCI AATT 8 cut(s) 381, 620, 675, 866, 930, 942, 1057, 1150
MluNI TGGCCA 1 cut(s) 1195
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 775
Mox20I TGGCCA 1 cut(s) 1195
MscI TGGCCA 1 cut(s) 1195
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 2 cut(s) 96, 815
Msp20I TGGCCA 1 cut(s) 1195
MunI CAATTG 3 cut(s) 866, 930, 942
MwoI GCNNNNNNNGC 9 cut(s) 25, 157, 395, 593, 605, 698, 788, 947, 1096
NcoI CCATGG 1 cut(s) 477
NdeII GATC 8 cut(s) 88, 106, 122, 179, 215, 737, 1015, 1075
NlaIII CATG 5 cut(s) 397, 481, 526, 820, 1200
NlaIV GGNNCC 5 cut(s) 29, 152, 227, 811, 921
NmuCI GTSAC 1 cut(s) 564
NsbI TGCGCA 1 cut(s) 161
NspV TTCGAA 1 cut(s) 14
PaeR7I CTCGAG 1 cut(s) 954
PagI TCATGA 1 cut(s) 522
PfeI GAWTC 4 cut(s) 302, 377, 469, 682
PflMI CCANNNNNTGG 1 cut(s) 728
PkrI GCNGC 5 cut(s) 205, 595, 598, 793, 949
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Ppu21I YACGTR 3 cut(s) 617, 896, 913
PspEI GGTNACC 1 cut(s) 1106
PspFI CCCAGC 2 cut(s) 687, 776
PspN4I GGNNCC 5 cut(s) 29, 152, 227, 811, 921
PspPI GGNCC 4 cut(s) 670, 690, 842, 1145
PstI CTGCAG 2 cut(s) 208, 601
PsuI RGATCY 3 cut(s) 122, 215, 737
RsaI GTAC 4 cut(s) 119, 246, 348, 664
RsaNI GTAC 4 cut(s) 118, 245, 347, 663
RseI CAYNNNNRTG 2 cut(s) 96, 815
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 5 cut(s) 204, 594, 597, 792, 948
Sau3AI GATC 8 cut(s) 88, 106, 122, 179, 215, 737, 1015, 1075
Sau96I GGNCC 4 cut(s) 670, 690, 842, 1145
SchI GAGTC 1 cut(s) 34
SduI GDGCHC 4 cut(s) 30, 153, 170, 1092
SfaNI GCATC 3 cut(s) 563, 871, 1177
SfcI CTRYAG 4 cut(s) 204, 219, 597, 1161
Sfr274I CTCGAG 1 cut(s) 954
SfuI TTCGAA 1 cut(s) 14
SinI GGWCC 1 cut(s) 670
SlaI CTCGAG 1 cut(s) 954
SmiMI CAYNNNNRTG 2 cut(s) 96, 815
SmlI CTYRAG 2 cut(s) 65, 954
SmoI CTYRAG 2 cut(s) 65, 954
Sse9I AATT 8 cut(s) 381, 620, 675, 866, 930, 942, 1057, 1150
SspI AATATT 1 cut(s) 963
StyI CCWWGG 3 cut(s) 229, 477, 504
TaaI ACNGT 5 cut(s) 515, 637, 859, 1045, 1165
TaiI ACGT 3 cut(s) 619, 898, 915
TaqI TCGA 2 cut(s) 14, 955
TaqII GACCGA 1 cut(s) 687
TasI AATT 8 cut(s) 381, 620, 675, 866, 930, 942, 1057, 1150
TatI WGTACW 1 cut(s) 244
TfiI GAWTC 4 cut(s) 302, 377, 469, 682
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 4 cut(s) 640, 864, 1078, 1174
TseFI GTSAC 1 cut(s) 564
TseI GCWGC 5 cut(s) 203, 593, 596, 791, 947
Tsp45I GTSAC 1 cut(s) 564
TspDTI ATGAA 3 cut(s) 368, 387, 846
TspGWI ACGGA 4 cut(s) 135, 278, 680, 1052
TspRI CASTG 4 cut(s) 640, 864, 1078, 1174
Van91I CCANNNNNTGG 1 cut(s) 728
VpaK11BI GGWCC 1 cut(s) 670
XapI RAATTY 2 cut(s) 675, 1057
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XhoI CTCGAG 1 cut(s) 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.