pycom05g17250

NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
20459601 .. 20463119
3519 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g17250.1

Sequence Viewer

Length: 1329 bp
ATGGCCCAAACCAAAGTAAGCATATGCCCGACTCCCAACCGATCCTACCCATCTTCTTCATCCAACAGGTCTCTCTCTCTCTCCTTTCTCTCTCTAGCTCTCTCTGAAGAACCTGCAGCTGAGAGCACGATGCAGGCCGTCTCGAAGCGCGTTGGGCGCCAGTATCTGACCCAATCATCTTCCATCTCGTCGCTCAAGTCAATCTATCCCCTTTCCGATCACTATTATGGAGCTGATCGTCCAAAATACGGATCTACCCTCGCCACCAAGGGAGTGGGGCACCTTGTGCGCAAGGGCACAGGTGGAAGATCATCTGTTAGTGGCATTGTTGCTGCAGTCTTTGGATCTACGGGGTTCCTTGGGCGTTATCTTGTGCAACAACTTGCCAAAATGGGAAGTCAGGTGTTAGTTCCTTTCCGTGGTTCTGAAGACTCCCATCGTCACCTCAAGTTAATGGGGGATTTGGGACAGATTGTACCAATGAAATACAATCCGCGAGATGAAGATTCAATTAAGGCAGTCATGGCAAAAGCAAACGTGGTTATCAATCTCATAGGGAGGGATTATGAGACAAGAAACTTTAGCTTTGAGGAAGTGAATCATTCCATGGCGCAACAACTGGCAACGATTTCCAAAGAACATGGGGGTATCATGAGATTTATTCAAGTTTCTTGCTTGGGGGCATCTTCCTCGTCTCCCTCCAGATTCCTAAGGACTAAAGCTGCTGCAGAGGAAGCTGTTTTAAGTGAATTGCCTGAGGCCACCATTTTGAGACCTGCTGTGATGGTTGGTACTGAGGATCGGATCTTGAATCGCTGGGCCTTTTTTGCAAAAAAATATGGCTTTCTTCCACTTGTTGAGGATCGATCTACTAAATTCCAACCCGTGTATGTTGTTGATGTTGCTGGGGCAATCGTGGCAGCCTTGAAAGATGATGGTACCAGCATGGGAAAAATTTATGAACTTGGTGGGCCTGAGGTCTTTACAATGCATCAATTGGCAGAGCTTATGTTTGATACAATCCGTGAATGGCCTCGCTACGTGAAGGTTCCCCTCCCAATTGCAAAGGCAATAGGTGCTCCACGAGAAATATTGCTTAACAAAGTTCCGTTTCCATTACCTAATCCTGAAATCTTCAACCGAGATCAAATCCTTGCCCAAGCTACAGATACACTCGTGTCAGAAAATGCTTTGACATTCAGTGATCTTGGACTTGTGCCCCATAAGCTGAAGGGTTACCCTATTGAGCTTCTTATCCAATTTCGCAAGGGTGGCCCAAATTACGGTTCTACAGTCAGTGAAAGAGTGTCTCCAGATGCTTGGCCATGA

Protein Analysis

443

Amino Acids

48.41

Weight (kDa)

9.31

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 112 - 323 6e-11 NAD dependent epimerase/dehydratase family
NmrA PF05368 112 - 363 1.8e-09 NmrA-like family
NAD_binding_10 PF13460 115 - 262 1.9e-08 NAD(P)H-binding
RmlD_sub_bind PF04321 238 - 345 3.4e-06 RmlD substrate binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 290
Acc36I ACCTGC 2 cut(s) 121, 784
Acc65I GGTACC 1 cut(s) 938
AccB1I GGYRCC 3 cut(s) 156, 279, 938
AccII CGCG 2 cut(s) 150, 496
AciI CCGC 1 cut(s) 494
AclWI GGATC 6 cut(s) 36, 259, 352, 807, 812, 870
AcoI YGGCCR 1 cut(s) 1322
AcsI RAATTY 2 cut(s) 875, 954
AcuI CTGAAG 3 cut(s) 126, 447, 1250
AcyI GRCGYC 1 cut(s) 157
AdeI CACNNNGTG 1 cut(s) 286
AfaI GTAC 3 cut(s) 477, 793, 940
AfiI CCNNNNNNNGG 3 cut(s) 248, 419, 1283
AgsI TTSAA 5 cut(s) 510, 665, 811, 928, 1138
AjuI GAANNNNNNNTTGG 2 cut(s) 1270, 1302
Alw21I GWGCWC 2 cut(s) 128, 1081
Alw26I GTCTC 6 cut(s) 75, 145, 563, 699, 766, 1314
AlwI GGATC 6 cut(s) 36, 259, 352, 807, 812, 870
AlwNI CAGNNNCTG 1 cut(s) 166
AoxI GGCC 8 cut(s) 3, 135, 759, 819, 971, 1031, 1273, 1322
ApeKI GCWGC 5 cut(s) 116, 332, 722, 725, 920
ApoI RAATTY 2 cut(s) 875, 954
Asp718I GGTACC 1 cut(s) 938
AspLEI GCGC 4 cut(s) 150, 159, 291, 613
AspS9I GGNCC 4 cut(s) 4, 819, 971, 1274
AsuHPI GGTGA 1 cut(s) 434
AxyI CCTNAGG 3 cut(s) 710, 756, 975
BaeGI GKGCMC 3 cut(s) 282, 299, 1221
BaeI ACNNNNGTAYC 2 cut(s) 1161, 1194
BalI TGGCCA 1 cut(s) 1324
BanI GGYRCC 3 cut(s) 156, 279, 938
BauI CACGAG 2 cut(s) 1083, 1175
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 2 cut(s) 128, 1081
BbvI GCAGC 5 cut(s) 128, 319, 709, 712, 932
BccI CCATC 5 cut(s) 58, 191, 444, 778, 929
BceAI ACGGC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 672, 706
BcoDI GTCTC 6 cut(s) 75, 145, 563, 699, 766, 1314
BfaI CTAG 1 cut(s) 95
BfmI CTRYAG 5 cut(s) 114, 333, 726, 1164, 1290
BfoI RGCGCY 1 cut(s) 160
BfuAI ACCTGC 2 cut(s) 121, 784
BisI GCNGC 5 cut(s) 117, 333, 723, 726, 921
BlsI GCNGC 5 cut(s) 118, 334, 724, 727, 922
BmgT120I GGNCC 4 cut(s) 4, 819, 971, 1274
BmiI GGNNCC 5 cut(s) 158, 281, 356, 940, 1050
BmsI GCATC 4 cut(s) 120, 692, 1000, 1306
BpiI GAAGAC 1 cut(s) 435
BpmI CTGGAG 2 cut(s) 685, 1296
BpuEI CTTGAG 2 cut(s) 179, 431
Bsa29I ATCGAT 1 cut(s) 865
BsaAI YACGTR 1 cut(s) 1042
BsaHI GRCGYC 1 cut(s) 157
BsaI GGTCTC 2 cut(s) 75, 766
BsaJI CCNNGG 4 cut(s) 267, 358, 418, 606
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 419, 1283
Bse1I ACTGG 2 cut(s) 160, 624
Bse21I CCTNAGG 3 cut(s) 710, 756, 975
BseCI ATCGAT 1 cut(s) 865
BseDI CCNNGG 4 cut(s) 267, 358, 418, 606
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 3 cut(s) 248, 419, 1283
BseMII CTCAG 4 cut(s) 111, 747, 786, 966
BseNI ACTGG 2 cut(s) 160, 624
BseSI GKGCMC 3 cut(s) 282, 299, 1221
BseXI GCAGC 5 cut(s) 128, 319, 709, 712, 932
BseYI CCCAGC 2 cut(s) 816, 905
Bsh1236I CGCG 2 cut(s) 150, 496
BshFI GGCC 8 cut(s) 5, 137, 761, 821, 973, 1033, 1275, 1324
BshNI GGYRCC 3 cut(s) 156, 279, 938
BshVI ATCGAT 1 cut(s) 865
BsiHKAI GWGCWC 2 cut(s) 128, 1081
BslFI GGGAC 1 cut(s) 480
BslI CCNNNNNNNGG 3 cut(s) 248, 419, 1283
BsmAI GTCTC 6 cut(s) 75, 145, 563, 699, 766, 1314
BsmBI CGTCTC 2 cut(s) 145, 699
BsmFI GGGAC 1 cut(s) 480
BsnI GGCC 8 cut(s) 5, 137, 761, 821, 973, 1033, 1275, 1324
Bso31I GGTCTC 2 cut(s) 75, 766
Bsp1286I GDGCHC 5 cut(s) 128, 282, 299, 1081, 1221
Bsp19I CCATGG 1 cut(s) 606
BspACI CCGC 1 cut(s) 494
BspANI GGCC 8 cut(s) 5, 137, 761, 821, 973, 1033, 1275, 1324
BspCNI CTCAG 4 cut(s) 112, 748, 787, 967
BspDI ATCGAT 1 cut(s) 865
BspFNI CGCG 2 cut(s) 150, 496
BspHI TCATGA 1 cut(s) 651
BspLI GGNNCC 5 cut(s) 158, 281, 356, 940, 1050
BspMAI CTGCAG 3 cut(s) 118, 337, 730
BspMI ACCTGC 2 cut(s) 121, 784
BspPI GGATC 6 cut(s) 36, 259, 352, 807, 812, 870
BspT107I GGYRCC 3 cut(s) 156, 279, 938
BspTNI GGTCTC 2 cut(s) 75, 766
BsrI ACTGG 2 cut(s) 160, 624
BssECI CCNNGG 4 cut(s) 267, 358, 418, 606
BssNI GRCGYC 1 cut(s) 157
BssSI CACGAG 2 cut(s) 1083, 1175
BssT1I CCWWGG 3 cut(s) 267, 358, 606
Bst2BI CACGAG 2 cut(s) 1083, 1175
Bst4CI ACNGT 2 cut(s) 1286, 1294
BstACI GRCGYC 1 cut(s) 157
BstAPI GCANNNNNTGC 2 cut(s) 286, 1076
BstBAI YACGTR 1 cut(s) 1042
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 5 cut(s) 120, 710, 756, 795, 975
BstDSI CCRYGG 2 cut(s) 418, 606
BstEII GGTNACC 1 cut(s) 1235
BstF5I GGATG 1 cut(s) 59
BstFNI CGCG 2 cut(s) 150, 496
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 4 cut(s) 150, 159, 291, 613
BstMAI GTCTC 6 cut(s) 75, 145, 563, 699, 766, 1314
BstPI GGTNACC 1 cut(s) 1235
BstSFI CTRYAG 5 cut(s) 114, 333, 726, 1164, 1290
BstSLI GKGCMC 3 cut(s) 282, 299, 1221
BstUI CGCG 2 cut(s) 150, 496
BstV1I GCAGC 5 cut(s) 128, 319, 709, 712, 932
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 3 cut(s) 251, 344, 804
BstXI CCANNNNNNTGG 2 cut(s) 274, 1320
BstYI RGATCY 3 cut(s) 251, 344, 804
Bsu15I ATCGAT 1 cut(s) 865
Bsu36I CCTNAGG 3 cut(s) 710, 756, 975
BsuRI GGCC 8 cut(s) 5, 137, 761, 821, 973, 1033, 1275, 1324
BsuTUI ATCGAT 1 cut(s) 865
BtgI CCRYGG 2 cut(s) 418, 606
BtsCI GGATG 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 1207, 1303
BveI ACCTGC 2 cut(s) 121, 784
Cac8I GCNNGC 1 cut(s) 135
CaiI CAGNNNCTG 1 cut(s) 166
CciI TCATGA 1 cut(s) 651
CfoI GCGC 4 cut(s) 150, 159, 291, 613
Cfr13I GGNCC 4 cut(s) 4, 819, 971, 1274
ClaI ATCGAT 1 cut(s) 865
Csp6I GTAC 3 cut(s) 476, 792, 939
CviAII CATG 6 cut(s) 523, 607, 641, 652, 946, 1326
CviQI GTAC 3 cut(s) 476, 792, 939
DdeI CTNAG 5 cut(s) 120, 710, 756, 795, 975
DinI GGCGCC 1 cut(s) 158
DraIII CACNNNGTG 1 cut(s) 286
EaeI YGGCCR 1 cut(s) 1322
Eco130I CCWWGG 3 cut(s) 267, 358, 606
Eco31I GGTCTC 2 cut(s) 75, 766
Eco57I CTGAAG 3 cut(s) 126, 447, 1250
Eco81I CCTNAGG 3 cut(s) 710, 756, 975
Eco91I GGTNACC 1 cut(s) 1235
EcoO65I GGTNACC 1 cut(s) 1235
EcoT14I CCWWGG 3 cut(s) 267, 358, 606
EcoT22I ATGCAT 1 cut(s) 993
EgeI GGCGCC 1 cut(s) 158
EheI GGCGCC 1 cut(s) 158
ErhI CCWWGG 3 cut(s) 267, 358, 606
Esp3I CGTCTC 2 cut(s) 145, 699
FaeI CATG 6 cut(s) 526, 610, 644, 655, 949, 1329
FaqI GGGAC 1 cut(s) 480
FatI CATG 6 cut(s) 522, 606, 640, 651, 945, 1325
FauNDI CATATG 1 cut(s) 23
Fnu4HI GCNGC 5 cut(s) 117, 333, 723, 726, 921
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 5 cut(s) 117, 333, 723, 726, 921
FspBI CTAG 1 cut(s) 95
FspI TGCGCA 1 cut(s) 290
GlaI GCGC 4 cut(s) 149, 158, 290, 612
GluI GCNGC 5 cut(s) 117, 333, 723, 726, 921
GsaI CCCAGC 2 cut(s) 820, 909
GsuI CTGGAG 2 cut(s) 685, 1296
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 8 cut(s) 5, 137, 761, 821, 973, 1033, 1275, 1324
HhaI GCGC 4 cut(s) 150, 159, 291, 613
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 6 cut(s) 526, 610, 644, 655, 949, 1329
Hin6I GCGC 4 cut(s) 148, 157, 289, 611
HinP1I GCGC 4 cut(s) 148, 157, 289, 611
HinfI GANTC 6 cut(s) 31, 431, 506, 598, 705, 811
HphI GGTGA 1 cut(s) 434
Hpy188I TCNGA 6 cut(s) 106, 168, 217, 427, 804, 1183
Hpy188III TCNNGA 6 cut(s) 142, 652, 702, 808, 1127, 1313
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 1039, 1225
HpyCH4III ACNGT 2 cut(s) 1286, 1294
HpyCH4IV ACGT 2 cut(s) 537, 1041
HpyCH4V TGCA 8 cut(s) 116, 133, 335, 376, 728, 830, 991, 1064
HpyF3I CTNAG 5 cut(s) 120, 710, 756, 795, 975
HpySE526I ACGT 2 cut(s) 537, 1041
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 6 cut(s) 526, 610, 644, 655, 949, 1329
HspAI GCGC 4 cut(s) 148, 157, 289, 611
KasI GGCGCC 1 cut(s) 156
KpnI GGTACC 1 cut(s) 942
LmnI GCTCC 2 cut(s) 230, 1084
Lsp1109I GCAGC 5 cut(s) 128, 319, 709, 712, 932
LweI GCATC 4 cut(s) 120, 692, 1000, 1306
MaeI CTAG 1 cut(s) 95
MaeII ACGT 2 cut(s) 537, 1041
MaeIII GTNAC 2 cut(s) 440, 1235
MfeI CAATTG 2 cut(s) 995, 1059
MflI RGATCY 3 cut(s) 251, 344, 804
MhlI GDGCHC 5 cut(s) 128, 282, 299, 1081, 1221
MlsI TGGCCA 1 cut(s) 1324
MluCI AATT 8 cut(s) 510, 749, 875, 954, 995, 1059, 1259, 1279
MluNI TGGCCA 1 cut(s) 1324
Mly113I GGCGCC 1 cut(s) 157
MlyI GAGTC 2 cut(s) 25, 425
MmeI TCCRAC 2 cut(s) 87, 904
Mox20I TGGCCA 1 cut(s) 1324
Mph1103I ATGCAT 1 cut(s) 993
MscI TGGCCA 1 cut(s) 1324
MseI TTAA 4 cut(s) 452, 513, 743, 1098
MslI CAYNNNNRTG 1 cut(s) 225
Msp20I TGGCCA 1 cut(s) 1324
MspA1I CMGCKG 1 cut(s) 119
MunI CAATTG 2 cut(s) 995, 1059
MvnI CGCG 2 cut(s) 150, 496
NarI GGCGCC 1 cut(s) 157
NcoI CCATGG 1 cut(s) 606
NdeI CATATG 1 cut(s) 23
NlaIII CATG 6 cut(s) 526, 610, 644, 655, 949, 1329
NlaIV GGNNCC 5 cut(s) 158, 281, 356, 940, 1050
NmuCI GTSAC 1 cut(s) 440
NsbI TGCGCA 1 cut(s) 290
NsiI ATGCAT 1 cut(s) 993
PagI TCATGA 1 cut(s) 651
PfeI GAWTC 4 cut(s) 506, 598, 705, 811
PkrI GCNGC 5 cut(s) 118, 334, 724, 727, 922
PleI GAGTC 2 cut(s) 25, 425
PluTI GGCGCC 1 cut(s) 160
PpsI GAGTC 2 cut(s) 25, 425
Ppu21I YACGTR 1 cut(s) 1042
PspEI GGTNACC 1 cut(s) 1235
PspFI CCCAGC 2 cut(s) 816, 905
PspN4I GGNNCC 5 cut(s) 158, 281, 356, 940, 1050
PspPI GGNCC 4 cut(s) 4, 819, 971, 1274
PstI CTGCAG 3 cut(s) 118, 337, 730
PstNI CAGNNNCTG 1 cut(s) 166
PsuI RGATCY 3 cut(s) 251, 344, 804
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 3 cut(s) 477, 793, 940
RsaNI GTAC 3 cut(s) 476, 792, 939
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 4 cut(s) 452, 513, 743, 1098
SatI GCNGC 5 cut(s) 117, 333, 723, 726, 921
Sau96I GGNCC 4 cut(s) 4, 819, 971, 1274
SchI GAGTC 2 cut(s) 25, 425
SduI GDGCHC 5 cut(s) 128, 282, 299, 1081, 1221
SfaNI GCATC 4 cut(s) 120, 692, 1000, 1306
SfcI CTRYAG 5 cut(s) 114, 333, 726, 1164, 1290
SfoI GGCGCC 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 2 cut(s) 194, 446
SmoI CTYRAG 2 cut(s) 194, 446
Sse9I AATT 8 cut(s) 510, 749, 875, 954, 995, 1059, 1259, 1279
SsiI CCGC 1 cut(s) 494
SspDI GGCGCC 1 cut(s) 156
SspI AATATT 1 cut(s) 1092
SspMI CTAG 1 cut(s) 95
StyI CCWWGG 3 cut(s) 267, 358, 606
TaaI ACNGT 2 cut(s) 1286, 1294
TaiI ACGT 2 cut(s) 540, 1044
TaqI TCGA 2 cut(s) 143, 865
TasI AATT 8 cut(s) 510, 749, 875, 954, 995, 1059, 1259, 1279
TfiI GAWTC 4 cut(s) 506, 598, 705, 811
Tru1I TTAA 4 cut(s) 452, 513, 743, 1098
Tru9I TTAA 4 cut(s) 452, 513, 743, 1098
TscAI CASTG 2 cut(s) 1207, 1303
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 5 cut(s) 116, 332, 722, 725, 920
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 4 cut(s) 48, 497, 516, 975
TspGWI ACGGA 4 cut(s) 264, 407, 1013, 1098
TspRI CASTG 2 cut(s) 1207, 1303
XapI RAATTY 2 cut(s) 875, 954
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XspI CTAG 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.