MD10G1175400.v1.1

NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
26770894 .. 26774951
4058 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1175400.v1.1.491

Sequence Viewer

Length: 1200 bp
ATGCAGGCCGCGTCGAAGCGCGTTGGGCGCCAGTATCTGACCCAATCATCTTCAATCTCGTCGCTCAAGTCAATCTACCCCCTTTCCGATCACTATTATGGAGCTGATCGTCCAAAGTACGGATCTACCCTCGCCACCAAGGGAGTGGGGCACCTTGTGCGCAAGGGCACAGGTGGAAGATCATCTGTTAGTGGCATTGTTGCTGCAGTTTTTGGATCTACGGGGTTCCTTGGGCGTTATCTTGTGCAACAACTTGCCAAAATGGGAAGTCAGGTGTTAGTTCCTTTCCGTGGTTCTGAAGACTCTCATCGCCACCTCAAGTTAATGGGGGATTTGGGACAGATAGTACCAATGAAATACAATCCAAGAGATGAAGATTCAATTAAGGCAGTCATGTCAAAAGCAAATGTGGTTATCAATCTCATTGGGAGGGATTATGAGACGAGAAACTTTAGCTTTGAGGAAGTGAATCATTCCATGGCGCAACAACTGGCAACGATTTCCAAAGAACATGGGGGTATCATGAGATTCATTCAAGTTTCTTGCTTGGGGGCATCTTCCTCATCTCCCTCCAGATTTCTAAGGACTAAAGCTGCTGCAGAGGAAGCTGTTTTAAGTGAATTGCCTGAGGCTACCATTTTGAGACCTGCTGTGATGGTTGGTACCGAGGATCGGATTTTGAATCGCTGGGCATTTTTTGCGAAAAAATATGGCTTTCTTCCGCTTATTGGGGATGGATCTACCAAATTCCAACCTGTATATGTTGTTGATGTTGCTGGGGCAATTGTGGCAGCTTTGAAAGATGATGGTACCAGCATGGGAAAAGTTTATGAACTTGGTGGGCCTGAGATCTTTACAATGCATCAATTGGCAGAGCTTATGTTTGATACAATCCGTGAATGGCCCCGCTACGTGAAGGTTCCTCTCCCAATTGCAAAGGCAATGGGAGCTCCACGAGAAATATTGCTTAACAAAGTTCCATTTCCATTACCTAATCCCGAAATCTTCAACCGAGATCAGATCCTTGCCCAAGCTACAGATACACTCGTGTCAGAAAACGCTTTGAGTTTCAATGATCTTGGACTTGTGCCCCATAAGCTGAAGGGTTACCCTATTGAGTTTCTTATCCAATTTCGCAAGGGTGGGCCCAACTACGGTTCTACTGTCAGTGAAAGAGTTTCTCCAGATGCTTGGCCATAA

Protein Analysis

400

Amino Acids

43.77

Weight (kDa)

9.39

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 69 - 280 9.5e-13 NAD dependent epimerase/dehydratase family
NmrA PF05368 69 - 315 4.5e-09 NmrA-like family
NAD_binding_10 PF13460 72 - 219 2.4e-08 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 161
Acc36I ACCTGC 1 cut(s) 655
Acc65I GGTACC 2 cut(s) 662, 809
AccB1I GGYRCC 4 cut(s) 27, 150, 662, 809
AccII CGCG 2 cut(s) 11, 21
AciI CCGC 3 cut(s) 9, 722, 907
AclWI GGATC 5 cut(s) 130, 223, 678, 745, 1015
AcoI YGGCCR 1 cut(s) 1193
AcsI RAATTY 1 cut(s) 746
AcuI CTGAAG 2 cut(s) 318, 1121
AcyI GRCGYC 1 cut(s) 28
AdeI CACNNNGTG 1 cut(s) 157
AfaI GTAC 4 cut(s) 119, 348, 664, 811
AfiI CCNNNNNNNGG 5 cut(s) 119, 290, 672, 728, 1154
AgsI TTSAA 7 cut(s) 54, 381, 536, 682, 799, 1009, 1072
AluBI AGCT 9 cut(s) 104, 456, 593, 608, 794, 877, 950, 1034, 1099
AluI AGCT 9 cut(s) 104, 456, 593, 608, 794, 877, 950, 1034, 1099
Alw21I GWGCWC 1 cut(s) 952
Alw26I GTCTC 2 cut(s) 434, 637
AlwI GGATC 5 cut(s) 130, 223, 678, 745, 1015
AlwNI CAGNNNCTG 1 cut(s) 37
AoxI GGCC 5 cut(s) 6, 842, 902, 1145, 1193
ApaI GGGCCC 1 cut(s) 1149
ApeKI GCWGC 4 cut(s) 203, 593, 596, 791
ApoI RAATTY 1 cut(s) 746
Asp718I GGTACC 2 cut(s) 662, 809
AspLEI GCGC 4 cut(s) 21, 30, 162, 484
AspS9I GGNCC 4 cut(s) 842, 903, 1145, 1146
AxyI CCTNAGG 1 cut(s) 627
BaeGI GKGCMC 4 cut(s) 153, 170, 1092, 1149
BaeI ACNNNNGTAYC 2 cut(s) 1032, 1065
BalI TGGCCA 1 cut(s) 1195
BanI GGYRCC 4 cut(s) 27, 150, 662, 809
BanII GRGCYC 2 cut(s) 952, 1149
BauI CACGAG 2 cut(s) 954, 1046
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 952
BbvI GCAGC 4 cut(s) 190, 580, 583, 803
BccI CCATC 3 cut(s) 649, 728, 800
BcoDI GTCTC 2 cut(s) 434, 637
BfmI CTRYAG 3 cut(s) 204, 597, 1035
BfoI RGCGCY 1 cut(s) 31
BfuAI ACCTGC 1 cut(s) 655
BglII AGATCT 1 cut(s) 849
BisI GCNGC 5 cut(s) 9, 204, 594, 597, 792
BlsI GCNGC 5 cut(s) 10, 205, 595, 598, 793
BmgT120I GGNCC 4 cut(s) 842, 903, 1145, 1146
BmiI GGNNCC 8 cut(s) 29, 152, 227, 664, 811, 905, 921, 1147
BmsI GCATC 3 cut(s) 563, 871, 1177
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 2 cut(s) 556, 1167
BpuEI CTTGAG 2 cut(s) 50, 302
BsaAI YACGTR 1 cut(s) 913
BsaHI GRCGYC 1 cut(s) 28
BsaI GGTCTC 1 cut(s) 637
BsaJI CCNNGG 5 cut(s) 138, 229, 289, 477, 666
Bsc4I CCNNNNNNNGG 5 cut(s) 119, 290, 672, 728, 1154
Bse1I ACTGG 2 cut(s) 31, 495
Bse21I CCTNAGG 1 cut(s) 627
Bse3DI GCAATG 1 cut(s) 948
BseDI CCNNGG 5 cut(s) 138, 229, 289, 477, 666
BseGI GGATG 1 cut(s) 739
BseLI CCNNNNNNNGG 5 cut(s) 119, 290, 672, 728, 1154
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 2 cut(s) 618, 837
BseNI ACTGG 2 cut(s) 31, 495
BseSI GKGCMC 4 cut(s) 153, 170, 1092, 1149
BseXI GCAGC 4 cut(s) 190, 580, 583, 803
BseYI CCCAGC 2 cut(s) 687, 776
Bsh1236I CGCG 2 cut(s) 11, 21
BshFI GGCC 5 cut(s) 8, 844, 904, 1147, 1195
BshNI GGYRCC 4 cut(s) 27, 150, 662, 809
BsiHKAI GWGCWC 1 cut(s) 952
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 5 cut(s) 119, 290, 672, 728, 1154
BsmAI GTCTC 2 cut(s) 434, 637
BsmBI CGTCTC 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 5 cut(s) 8, 844, 904, 1147, 1195
Bso31I GGTCTC 1 cut(s) 637
Bsp120I GGGCCC 1 cut(s) 1145
Bsp1286I GDGCHC 5 cut(s) 153, 170, 952, 1092, 1149
Bsp19I CCATGG 1 cut(s) 477
BspACI CCGC 3 cut(s) 9, 722, 907
BspANI GGCC 5 cut(s) 8, 844, 904, 1147, 1195
BspCNI CTCAG 2 cut(s) 619, 838
BspFNI CGCG 2 cut(s) 11, 21
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 8 cut(s) 29, 152, 227, 664, 811, 905, 921, 1147
BspMAI CTGCAG 2 cut(s) 208, 601
BspMI ACCTGC 1 cut(s) 655
BspPI GGATC 5 cut(s) 130, 223, 678, 745, 1015
BspT107I GGYRCC 4 cut(s) 27, 150, 662, 809
BspTNI GGTCTC 1 cut(s) 637
BsrDI GCAATG 1 cut(s) 948
BsrI ACTGG 2 cut(s) 31, 495
BssECI CCNNGG 5 cut(s) 138, 229, 289, 477, 666
BssNI GRCGYC 1 cut(s) 28
BssSI CACGAG 2 cut(s) 954, 1046
BssT1I CCWWGG 3 cut(s) 138, 229, 477
Bst2BI CACGAG 2 cut(s) 954, 1046
Bst4CI ACNGT 2 cut(s) 1157, 1165
BstACI GRCGYC 1 cut(s) 28
BstAPI GCANNNNNTGC 2 cut(s) 157, 698
BstBAI YACGTR 1 cut(s) 913
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 3 cut(s) 581, 627, 846
BstDSI CCRYGG 2 cut(s) 289, 477
BstEII GGTNACC 1 cut(s) 1106
BstF5I GGATG 1 cut(s) 739
BstFNI CGCG 2 cut(s) 11, 21
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 4 cut(s) 21, 30, 162, 484
BstMAI GTCTC 2 cut(s) 434, 637
BstMWI GCNNNNNNNGC 8 cut(s) 25, 27, 157, 605, 698, 788, 947, 1096
BstPI GGTNACC 1 cut(s) 1106
BstSFI CTRYAG 3 cut(s) 204, 597, 1035
BstSLI GKGCMC 4 cut(s) 153, 170, 1092, 1149
BstUI CGCG 2 cut(s) 11, 21
BstV1I GCAGC 4 cut(s) 190, 580, 583, 803
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 5 cut(s) 122, 215, 737, 849, 1020
BstXI CCANNNNNNTGG 2 cut(s) 145, 1191
BstYI RGATCY 5 cut(s) 122, 215, 737, 849, 1020
Bsu36I CCTNAGG 1 cut(s) 627
BsuRI GGCC 5 cut(s) 8, 844, 904, 1147, 1195
BtgI CCRYGG 2 cut(s) 289, 477
BtgZI GCGATG 1 cut(s) 293
BtsCI GGATG 1 cut(s) 739
BtsIMutI CAGTG 1 cut(s) 1174
BveI ACCTGC 1 cut(s) 655
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 37
CciI TCATGA 1 cut(s) 522
CfoI GCGC 4 cut(s) 21, 30, 162, 484
Cfr13I GGNCC 4 cut(s) 842, 903, 1145, 1146
Csp6I GTAC 4 cut(s) 118, 347, 663, 810
CviAII CATG 5 cut(s) 394, 478, 512, 523, 817
CviQI GTAC 4 cut(s) 118, 347, 663, 810
DdeI CTNAG 3 cut(s) 581, 627, 846
DinI GGCGCC 1 cut(s) 29
DraIII CACNNNGTG 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 1193
Ecl136II GAGCTC 1 cut(s) 950
Eco130I CCWWGG 3 cut(s) 138, 229, 477
Eco24I GRGCYC 2 cut(s) 952, 1149
Eco31I GGTCTC 1 cut(s) 637
Eco53kI GAGCTC 1 cut(s) 950
Eco57I CTGAAG 2 cut(s) 318, 1121
Eco81I CCTNAGG 1 cut(s) 627
Eco91I GGTNACC 1 cut(s) 1106
EcoICRI GAGCTC 1 cut(s) 950
EcoO65I GGTNACC 1 cut(s) 1106
EcoT14I CCWWGG 3 cut(s) 138, 229, 477
EcoT22I ATGCAT 1 cut(s) 864
EcoT38I GRGCYC 2 cut(s) 952, 1149
EgeI GGCGCC 1 cut(s) 29
EheI GGCGCC 1 cut(s) 29
ErhI CCWWGG 3 cut(s) 138, 229, 477
Esp3I CGTCTC 1 cut(s) 434
FaeI CATG 5 cut(s) 397, 481, 515, 526, 820
FaqI GGGAC 1 cut(s) 351
FatI CATG 5 cut(s) 393, 477, 511, 522, 816
FauI CCCGC 1 cut(s) 914
Fnu4HI GCNGC 5 cut(s) 9, 204, 594, 597, 792
FokI GGATG 1 cut(s) 746
FriOI GRGCYC 2 cut(s) 952, 1149
Fsp4HI GCNGC 5 cut(s) 9, 204, 594, 597, 792
FspI TGCGCA 1 cut(s) 161
GlaI GCGC 4 cut(s) 20, 29, 161, 483
GluI GCNGC 5 cut(s) 9, 204, 594, 597, 792
GsaI CCCAGC 2 cut(s) 691, 780
GsuI CTGGAG 2 cut(s) 556, 1167
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 5 cut(s) 8, 844, 904, 1147, 1195
HhaI GCGC 4 cut(s) 21, 30, 162, 484
Hin1I GRCGYC 1 cut(s) 28
Hin1II CATG 5 cut(s) 397, 481, 515, 526, 820
Hin6I GCGC 4 cut(s) 19, 28, 160, 482
HinP1I GCGC 4 cut(s) 19, 28, 160, 482
HinfI GANTC 5 cut(s) 302, 377, 469, 528, 682
Hpy188I TCNGA 6 cut(s) 39, 88, 298, 675, 1020, 1054
Hpy188III TCNNGA 4 cut(s) 523, 573, 998, 1184
Hpy99I CGWCG 2 cut(s) 16, 64
HpyAV CCTTC 2 cut(s) 910, 1096
HpyCH4III ACNGT 2 cut(s) 1157, 1165
HpyCH4IV ACGT 1 cut(s) 912
HpyCH4V TGCA 6 cut(s) 4, 206, 247, 599, 862, 935
HpyF10VI GCNNNNNNNGC 8 cut(s) 25, 27, 157, 605, 698, 788, 947, 1096
HpyF3I CTNAG 3 cut(s) 581, 627, 846
HpySE526I ACGT 1 cut(s) 912
Hsp92I GRCGYC 1 cut(s) 28
Hsp92II CATG 5 cut(s) 397, 481, 515, 526, 820
HspAI GCGC 4 cut(s) 19, 28, 160, 482
KasI GGCGCC 1 cut(s) 27
KpnI GGTACC 2 cut(s) 666, 813
LmnI GCTCC 3 cut(s) 101, 947, 955
Lsp1109I GCAGC 4 cut(s) 190, 580, 583, 803
LweI GCATC 3 cut(s) 563, 871, 1177
MaeII ACGT 1 cut(s) 912
MaeIII GTNAC 1 cut(s) 1106
MboII GAAGA 7 cut(s) 42, 189, 311, 386, 549, 710, 997
MfeI CAATTG 3 cut(s) 783, 866, 930
MflI RGATCY 5 cut(s) 122, 215, 737, 849, 1020
MhlI GDGCHC 5 cut(s) 153, 170, 952, 1092, 1149
MlsI TGGCCA 1 cut(s) 1195
MluCI AATT 7 cut(s) 381, 620, 746, 783, 866, 930, 1130
MluNI TGGCCA 1 cut(s) 1195
Mly113I GGCGCC 1 cut(s) 28
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 775
Mox20I TGGCCA 1 cut(s) 1195
Mph1103I ATGCAT 1 cut(s) 864
MscI TGGCCA 1 cut(s) 1195
MseI TTAA 4 cut(s) 323, 384, 614, 969
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 1195
MunI CAATTG 3 cut(s) 783, 866, 930
MvnI CGCG 2 cut(s) 11, 21
MwoI GCNNNNNNNGC 8 cut(s) 25, 27, 157, 605, 698, 788, 947, 1096
NarI GGCGCC 1 cut(s) 28
NcoI CCATGG 1 cut(s) 477
NlaIII CATG 5 cut(s) 397, 481, 515, 526, 820
NlaIV GGNNCC 8 cut(s) 29, 152, 227, 664, 811, 905, 921, 1147
NsbI TGCGCA 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 864
PagI TCATGA 1 cut(s) 522
PfeI GAWTC 4 cut(s) 377, 469, 528, 682
PkrI GCNGC 5 cut(s) 10, 205, 595, 598, 793
PleI GAGTC 1 cut(s) 296
PluTI GGCGCC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 296
Ppu21I YACGTR 1 cut(s) 913
Psp124BI GAGCTC 1 cut(s) 952
PspEI GGTNACC 1 cut(s) 1106
PspFI CCCAGC 2 cut(s) 687, 776
PspN4I GGNNCC 8 cut(s) 29, 152, 227, 664, 811, 905, 921, 1147
PspOMI GGGCCC 1 cut(s) 1145
PspPI GGNCC 4 cut(s) 842, 903, 1145, 1146
PstI CTGCAG 2 cut(s) 208, 601
PstNI CAGNNNCTG 1 cut(s) 37
PsuI RGATCY 5 cut(s) 122, 215, 737, 849, 1020
RsaI GTAC 4 cut(s) 119, 348, 664, 811
RsaNI GTAC 4 cut(s) 118, 347, 663, 810
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 952
SaqAI TTAA 4 cut(s) 323, 384, 614, 969
SatI GCNGC 5 cut(s) 9, 204, 594, 597, 792
Sau96I GGNCC 4 cut(s) 842, 903, 1145, 1146
SchI GAGTC 1 cut(s) 296
SduI GDGCHC 5 cut(s) 153, 170, 952, 1092, 1149
SfaNI GCATC 3 cut(s) 563, 871, 1177
SfcI CTRYAG 3 cut(s) 204, 597, 1035
SfoI GGCGCC 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 2 cut(s) 65, 317
SmoI CTYRAG 2 cut(s) 65, 317
Sse9I AATT 7 cut(s) 381, 620, 746, 783, 866, 930, 1130
SsiI CCGC 3 cut(s) 9, 722, 907
SspDI GGCGCC 1 cut(s) 27
SspI AATATT 1 cut(s) 963
SstI GAGCTC 1 cut(s) 952
StyI CCWWGG 3 cut(s) 138, 229, 477
TaaI ACNGT 2 cut(s) 1157, 1165
TaiI ACGT 1 cut(s) 915
TaqI TCGA 1 cut(s) 14
TasI AATT 7 cut(s) 381, 620, 746, 783, 866, 930, 1130
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 4 cut(s) 377, 469, 528, 682
Tru1I TTAA 4 cut(s) 323, 384, 614, 969
Tru9I TTAA 4 cut(s) 323, 384, 614, 969
TscAI CASTG 1 cut(s) 1174
TseI GCWGC 4 cut(s) 203, 593, 596, 791
TspDTI ATGAA 4 cut(s) 368, 387, 520, 846
TspGWI ACGGA 3 cut(s) 135, 278, 884
TspRI CASTG 1 cut(s) 1174
XapI RAATTY 1 cut(s) 746
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
Zsp2I ATGCAT 1 cut(s) 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.