FvH4_2g20370

NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
17113264 .. 17117281
4018 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20370.t3

Sequence Viewer

Length: 1194 bp
ATGCAGGCCATTACGAGGCGCGCTGGGCATCGATATCTGAGCCCCTCATCGTCGTCGCTCAAGTCAATCTACCCTACCTCCGATCATTATTATGGAGCCGAGCGTCCTAAGTACGGATCTACCCTCGCCACTAAGGGAGTGGGGCACCTTGTTCGCAAGGGCACTGGTGGAAGATCATCTGTTAGTGGCATTGTAGCAGCAGTTTTTGGATCTACTGGGTTCCTTGGTCGTTATCTTGTACAACAACTTGCCAAAATGGGAAGCCAGGTATTAGTACCATTCCGTGGTTCTGAAGATTCTCATCGTCATCTCAAGTTGATGGGAGATTTGGGGCAGATAGTACCAATGAAATACAATCCAAGAGATGAAAGTTCAATTAAGGCGGTAATGGCGAAAGCTAATGTGGTTATCAATCTTATTGGGAGAGAATATGAGACAAGAAACTTTAGCTTTGAGGAAGTGAATCATTCCATGGCTGAACAACTCGCAATGATTTCCAAAGAGCATGGGGGTATCATGAGATTTATTCAAGTTTCTTGCTTAGGGGCATCTCCCTCATCAGAATCCAGATATCTAAGGGCTAAAGCTGCTGCAGAGGGTGCTGTTTTAAGTGCATTACCAGAGGCCACCGTTATGAGACCTGCTGTGATGATTGGTACAGAGGATCGAATTTTGAATCGATGGGCTTTTGTTTCAAAAAAATATGGCTTTCTTCCACTTATAGGGGATGGGTCTACCAAAATCCAACCTGTGTATGTTGCTGATGTTGCTGGTGCAATCGTTTCGGCCCTGCAAGATGATGGCACCAGCATGGGAAAAGTTTATGAACTTGGTGGGCCTGATGTCTATACAGTGCATCAATTGGCAGAGCTTATGTTTGACATGATCCGGGAATGGCCTCATTACGTGAAGATTCCAATCCCAATCGCAAAGGCAATTGCAATGCCTCGAGAAATCCTGCTTAAAAAAGTTCCGTTTCCATTGCCAAATCCTGAAATCTTCAACCTAGATCAAATCCTTGCCCAAGCTCCAGATACAGTTGTCTCAGAAAATGCCTTGACTTTCAATGATCTTGGAATTCTGCCCCATAAGATCAAGGGTTACCCTATTGAGTTTCTTATCCAATATCGGAAGGGCGGACCAAACTTCGGTTCTACAGTCAGTGAAAAAGTTTCTCCAGATTCTTATCCATGA

Protein Analysis

398

Amino Acids

43.42

Weight (kDa)

9.27

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 649
AccB1I GGYRCC 2 cut(s) 144, 803
AccB7I CCANNNNNTGG 1 cut(s) 284
AccI GTMKAC 1 cut(s) 734
AccII CGCG 1 cut(s) 21
AciI CCGC 2 cut(s) 383, 1137
AclWI GGATC 4 cut(s) 124, 217, 672, 880
AcsI RAATTY 2 cut(s) 669, 1077
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 5 cut(s) 113, 240, 276, 342, 658
AfiI CCNNNNNNNGG 5 cut(s) 15, 113, 284, 722, 1148
AgsI TTSAA 6 cut(s) 375, 530, 676, 696, 1003, 1066
AjnI CCWGG 1 cut(s) 264
AjuI GAANNNNNNNTTGG 2 cut(s) 1135, 1167
AluBI AGCT 5 cut(s) 398, 450, 587, 871, 1028
AluI AGCT 5 cut(s) 398, 450, 587, 871, 1028
Alw26I GTCTC 3 cut(s) 428, 631, 1048
AlwI GGATC 4 cut(s) 124, 217, 672, 880
Ama87I CYCGRG 1 cut(s) 948
AoxI GGCC 5 cut(s) 6, 624, 786, 836, 896
ApeKI GCWGC 3 cut(s) 197, 587, 590
ApoI RAATTY 2 cut(s) 669, 1077
AspLEI GCGC 2 cut(s) 21, 23
AspS9I GGNCC 3 cut(s) 787, 836, 1139
AsuC2I CCSGG 1 cut(s) 890
AvaI CYCGRG 1 cut(s) 948
AvaII GGWCC 1 cut(s) 1139
BaeGI GKGCMC 2 cut(s) 147, 164
BaeI ACNNNNGTAYC 2 cut(s) 1026, 1059
BanI GGYRCC 2 cut(s) 144, 803
BanII GRGCYC 1 cut(s) 44
BbvI GCAGC 3 cut(s) 209, 574, 577
BccI CCATC 4 cut(s) 313, 675, 722, 794
BcgI CGANNNNNNTGC 4 cut(s) 134, 168, 765, 799
BciT130I CCWGG 1 cut(s) 266
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 3 cut(s) 428, 631, 1048
BfaI CTAG 1 cut(s) 1007
BfmI CTRYAG 2 cut(s) 591, 1155
BfuAI ACCTGC 1 cut(s) 649
BisI GCNGC 3 cut(s) 198, 588, 591
BlsI GCNGC 3 cut(s) 199, 589, 592
Bme1390I CCNGG 2 cut(s) 266, 890
Bme18I GGWCC 1 cut(s) 1139
BmeT110I CYCGRG 1 cut(s) 948
BmgT120I GGNCC 3 cut(s) 787, 836, 1139
BmiI GGNNCC 4 cut(s) 97, 146, 221, 805
BmrFI CCNGG 2 cut(s) 266, 890
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 3 cut(s) 37, 557, 865
BmuI ACTGGG 1 cut(s) 225
BpmI CTGGAG 2 cut(s) 1014, 1161
Bpu10I CCTNAGC 1 cut(s) 541
BpuEI CTTGAG 2 cut(s) 44, 296
BpuMI CCSGG 1 cut(s) 890
Bsa29I ATCGAT 2 cut(s) 31, 679
BsaAI YACGTR 1 cut(s) 907
BsaBI GATNNNNATC 3 cut(s) 300, 917, 1185
BsaI GGTCTC 1 cut(s) 631
BsaJI CCNNGG 3 cut(s) 223, 283, 471
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 5 cut(s) 15, 113, 284, 722, 1148
Bse1I ACTGG 2 cut(s) 169, 220
Bse3DI GCAATG 3 cut(s) 495, 948, 980
Bse8I GATNNNNATC 3 cut(s) 300, 917, 1185
BseBI CCWGG 1 cut(s) 266
BseCI ATCGAT 2 cut(s) 31, 679
BseDI CCNNGG 3 cut(s) 223, 283, 471
BseGI GGATG 1 cut(s) 733
BseJI GATNNNNATC 3 cut(s) 300, 917, 1185
BseLI CCNNNNNNNGG 5 cut(s) 15, 113, 284, 722, 1148
BseMI GCAATG 3 cut(s) 495, 948, 980
BseMII CTCAG 2 cut(s) 29, 1059
BseNI ACTGG 2 cut(s) 169, 220
BsePI GCGCGC 1 cut(s) 19
BseSI GKGCMC 2 cut(s) 147, 164
BseXI GCAGC 3 cut(s) 209, 574, 577
BseYI CCCAGC 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 5 cut(s) 8, 626, 788, 838, 898
BshNI GGYRCC 2 cut(s) 144, 803
BshVI ATCGAT 2 cut(s) 31, 679
BsiHKCI CYCGRG 1 cut(s) 948
BsiSI CCGG 1 cut(s) 889
BslI CCNNNNNNNGG 5 cut(s) 15, 113, 284, 722, 1148
BsmAI GTCTC 3 cut(s) 428, 631, 1048
BsnI GGCC 5 cut(s) 8, 626, 788, 838, 898
Bso31I GGTCTC 1 cut(s) 631
BsoBI CYCGRG 1 cut(s) 948
Bsp1286I GDGCHC 3 cut(s) 44, 147, 164
Bsp1407I TGTACA 1 cut(s) 238
Bsp143I GATC 9 cut(s) 82, 116, 173, 209, 664, 885, 1009, 1069, 1092
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 2 cut(s) 383, 1137
BspANI GGCC 5 cut(s) 8, 626, 788, 838, 898
BspCNI CTCAG 2 cut(s) 30, 1058
BspDI ATCGAT 2 cut(s) 31, 679
BspFNI CGCG 1 cut(s) 21
BspHI TCATGA 1 cut(s) 516
BspLI GGNNCC 4 cut(s) 97, 146, 221, 805
BspMAI CTGCAG 1 cut(s) 595
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 4 cut(s) 124, 217, 672, 880
BspT107I GGYRCC 2 cut(s) 144, 803
BspTNI GGTCTC 1 cut(s) 631
BsrDI GCAATG 3 cut(s) 495, 948, 980
BsrGI TGTACA 1 cut(s) 238
BsrI ACTGG 2 cut(s) 169, 220
BssECI CCNNGG 3 cut(s) 223, 283, 471
BssHII GCGCGC 1 cut(s) 19
BssMI GATC 9 cut(s) 82, 116, 173, 209, 664, 885, 1009, 1069, 1092
BssT1I CCWWGG 2 cut(s) 223, 471
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 4 cut(s) 631, 853, 1039, 1159
BstAPI GCANNNNNTGC 1 cut(s) 599
BstAUI TGTACA 1 cut(s) 238
BstBAI YACGTR 1 cut(s) 907
BstC8I GCNNGC 2 cut(s) 6, 21
BstDEI CTNAG 6 cut(s) 38, 108, 132, 541, 575, 1045
BstDSI CCRYGG 2 cut(s) 283, 471
BstEII GGTNACC 1 cut(s) 1100
BstF5I GGATG 1 cut(s) 733
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 2 cut(s) 21, 23
BstKTI GATC 9 cut(s) 85, 119, 176, 212, 667, 888, 1012, 1072, 1095
BstMAI GTCTC 3 cut(s) 428, 631, 1048
BstMBI GATC 9 cut(s) 82, 116, 173, 209, 664, 885, 1009, 1069, 1092
BstMWI GCNNNNNNNGC 5 cut(s) 25, 389, 587, 599, 767
BstNI CCWGG 1 cut(s) 266
BstPI GGTNACC 1 cut(s) 1100
BstSCI CCNGG 2 cut(s) 264, 888
BstSFI CTRYAG 2 cut(s) 591, 1155
BstSLI GKGCMC 2 cut(s) 147, 164
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 3 cut(s) 209, 574, 577
BstX2I RGATCY 2 cut(s) 116, 209
BstYI RGATCY 2 cut(s) 116, 209
Bsu15I ATCGAT 2 cut(s) 31, 679
BsuRI GGCC 5 cut(s) 8, 626, 788, 838, 898
BsuTUI ATCGAT 2 cut(s) 31, 679
BtgI CCRYGG 2 cut(s) 283, 471
BtsCI GGATG 1 cut(s) 733
BtsIMutI CAGTG 3 cut(s) 162, 858, 1168
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 2 cut(s) 6, 21
CciI TCATGA 1 cut(s) 516
CfoI GCGC 2 cut(s) 21, 23
Cfr13I GGNCC 3 cut(s) 787, 836, 1139
ClaI ATCGAT 2 cut(s) 31, 679
CseI GACGC 1 cut(s) 92
Csp6I GTAC 5 cut(s) 112, 239, 275, 341, 657
CviAII CATG 6 cut(s) 472, 506, 517, 811, 883, 1191
CviQI GTAC 5 cut(s) 112, 239, 275, 341, 657
DdeI CTNAG 6 cut(s) 38, 108, 132, 541, 575, 1045
DpnI GATC 9 cut(s) 84, 118, 175, 211, 666, 887, 1011, 1071, 1094
DpnII GATC 9 cut(s) 82, 116, 173, 209, 664, 885, 1009, 1069, 1092
EciI GGCGGA 1 cut(s) 1152
Eco130I CCWWGG 2 cut(s) 223, 471
Eco24I GRGCYC 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 631
Eco32I GATATC 2 cut(s) 35, 572
Eco47I GGWCC 1 cut(s) 1139
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 948
Eco91I GGTNACC 1 cut(s) 1100
EcoO65I GGTNACC 1 cut(s) 1100
EcoRI GAATTC 1 cut(s) 1077
EcoRII CCWGG 1 cut(s) 264
EcoRV GATATC 2 cut(s) 35, 572
EcoT14I CCWWGG 2 cut(s) 223, 471
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 2 cut(s) 223, 471
FaeI CATG 6 cut(s) 475, 509, 520, 814, 886, 1194
FatI CATG 6 cut(s) 471, 505, 516, 810, 882, 1190
FblI GTMKAC 1 cut(s) 734
Fnu4HI GCNGC 3 cut(s) 198, 588, 591
FokI GGATG 1 cut(s) 740
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 3 cut(s) 198, 588, 591
FspBI CTAG 1 cut(s) 1007
GlaI GCGC 2 cut(s) 20, 22
GluI GCNGC 3 cut(s) 198, 588, 591
GsaI CCCAGC 1 cut(s) 27
GsuI CTGGAG 2 cut(s) 1014, 1161
HaeIII GGCC 5 cut(s) 8, 626, 788, 838, 898
HapII CCGG 1 cut(s) 889
HgaI GACGC 1 cut(s) 92
HhaI GCGC 2 cut(s) 21, 23
Hin1II CATG 6 cut(s) 475, 509, 520, 814, 886, 1194
Hin6I GCGC 2 cut(s) 19, 21
HinP1I GCGC 2 cut(s) 19, 21
HinfI GANTC 6 cut(s) 296, 463, 563, 676, 913, 1181
HpaII CCGG 1 cut(s) 889
Hpy166II GTNNAC 1 cut(s) 735
Hpy188I TCNGA 6 cut(s) 39, 82, 292, 562, 1048, 1131
Hpy188III TCNNGA 6 cut(s) 517, 567, 950, 992, 1031, 1178
Hpy8I GTNNAC 1 cut(s) 735
Hpy99I CGWCG 2 cut(s) 55, 58
HpyAV CCTTC 1 cut(s) 1126
HpyCH4III ACNGT 4 cut(s) 631, 853, 1039, 1159
HpyCH4IV ACGT 1 cut(s) 906
HpyCH4V TGCA 7 cut(s) 4, 593, 614, 776, 793, 856, 941
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 389, 587, 599, 767
HpyF3I CTNAG 6 cut(s) 38, 108, 132, 541, 575, 1045
HpySE526I ACGT 1 cut(s) 906
Hsp92II CATG 6 cut(s) 475, 509, 520, 814, 886, 1194
HspAI GCGC 2 cut(s) 19, 21
Kzo9I GATC 9 cut(s) 82, 116, 173, 209, 664, 885, 1009, 1069, 1092
LmnI GCTCC 2 cut(s) 95, 1033
Lsp1109I GCAGC 3 cut(s) 209, 574, 577
LweI GCATC 3 cut(s) 37, 557, 865
MaeI CTAG 1 cut(s) 1007
MaeII ACGT 1 cut(s) 906
MaeIII GTNAC 1 cut(s) 1100
MalI GATC 9 cut(s) 84, 118, 175, 211, 666, 887, 1011, 1071, 1094
MboI GATC 9 cut(s) 82, 116, 173, 209, 664, 885, 1009, 1069, 1092
MboII GAAGA 5 cut(s) 183, 305, 704, 922, 991
MfeI CAATTG 2 cut(s) 860, 936
MflI RGATCY 2 cut(s) 116, 209
MhlI GDGCHC 3 cut(s) 44, 147, 164
MluCI AATT 5 cut(s) 375, 669, 860, 936, 1077
MmeI TCCRAC 1 cut(s) 769
MseI TTAA 3 cut(s) 378, 608, 963
MslI CAYNNNNRTG 3 cut(s) 90, 632, 809
MspI CCGG 1 cut(s) 889
MspR9I CCNGG 2 cut(s) 266, 890
MunI CAATTG 2 cut(s) 860, 936
MvaI CCWGG 1 cut(s) 266
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 5 cut(s) 25, 389, 587, 599, 767
NciI CCSGG 1 cut(s) 890
NcoI CCATGG 1 cut(s) 471
NdeII GATC 9 cut(s) 82, 116, 173, 209, 664, 885, 1009, 1069, 1092
NlaIII CATG 6 cut(s) 475, 509, 520, 814, 886, 1194
NlaIV GGNNCC 4 cut(s) 97, 146, 221, 805
NmeAIII GCCGAG 1 cut(s) 124
PaeR7I CTCGAG 1 cut(s) 948
PagI TCATGA 1 cut(s) 516
PauI GCGCGC 1 cut(s) 19
PfeI GAWTC 6 cut(s) 296, 463, 563, 676, 913, 1181
PflMI CCANNNNNTGG 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 888
PkrI GCNGC 3 cut(s) 199, 589, 592
Ppu21I YACGTR 1 cut(s) 907
Psp6I CCWGG 1 cut(s) 264
PspEI GGTNACC 1 cut(s) 1100
PspFI CCCAGC 1 cut(s) 23
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 4 cut(s) 97, 146, 221, 805
PspPI GGNCC 3 cut(s) 787, 836, 1139
PstI CTGCAG 1 cut(s) 595
PsuI RGATCY 2 cut(s) 116, 209
PteI GCGCGC 1 cut(s) 19
RsaI GTAC 5 cut(s) 113, 240, 276, 342, 658
RsaNI GTAC 5 cut(s) 112, 239, 275, 341, 657
RseI CAYNNNNRTG 3 cut(s) 90, 632, 809
SaqAI TTAA 3 cut(s) 378, 608, 963
SatI GCNGC 3 cut(s) 198, 588, 591
Sau3AI GATC 9 cut(s) 82, 116, 173, 209, 664, 885, 1009, 1069, 1092
Sau96I GGNCC 3 cut(s) 787, 836, 1139
ScrFI CCNGG 2 cut(s) 266, 890
SduI GDGCHC 3 cut(s) 44, 147, 164
SfaNI GCATC 3 cut(s) 37, 557, 865
SfcI CTRYAG 2 cut(s) 591, 1155
Sfr274I CTCGAG 1 cut(s) 948
SinI GGWCC 1 cut(s) 1139
SlaI CTCGAG 1 cut(s) 948
SmiMI CAYNNNNRTG 3 cut(s) 90, 632, 809
SmlI CTYRAG 3 cut(s) 59, 311, 948
SmoI CTYRAG 3 cut(s) 59, 311, 948
Sse9I AATT 5 cut(s) 375, 669, 860, 936, 1077
SsiI CCGC 2 cut(s) 383, 1137
SspMI CTAG 1 cut(s) 1007
StyD4I CCNGG 2 cut(s) 264, 888
StyI CCWWGG 2 cut(s) 223, 471
TaaI ACNGT 4 cut(s) 631, 853, 1039, 1159
TaiI ACGT 1 cut(s) 909
TaqI TCGA 4 cut(s) 31, 667, 679, 949
TasI AATT 5 cut(s) 375, 669, 860, 936, 1077
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 6 cut(s) 296, 463, 563, 676, 913, 1181
Tru1I TTAA 3 cut(s) 378, 608, 963
Tru9I TTAA 3 cut(s) 378, 608, 963
TscAI CASTG 3 cut(s) 169, 858, 1168
TseI GCWGC 3 cut(s) 197, 587, 590
TspDTI ATGAA 3 cut(s) 362, 381, 840
TspGWI ACGGA 3 cut(s) 129, 272, 963
TspRI CASTG 3 cut(s) 169, 858, 1168
Van91I CCANNNNNTGG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 1139
XapI RAATTY 2 cut(s) 669, 1077
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 948
XmiI GTMKAC 1 cut(s) 734
XspI CTAG 1 cut(s) 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.