Rmu_sc0005089.1_g000001

NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005089.1
Physical Location & Seq
Forward (+)
1095 .. 5257
4163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005089.1_g000001.1.cds

Sequence Viewer

Length: 1335 bp
atgcccaagttgctgagaaggatcgccatcttgttcacactgcccagccctttgattctcgctccggtctctctccgtccgtccctctcagagctgaagctgcaagtgagcaacacgatgcaggcgattacgaggcgcgctgggcagcgatatctgaatccctcatcgtcgctcaagtcaatctaccctctctccgatcaccattatggagctgagcgtcccaagtacggatctagcctcgccactaagggagtggggcaccttgtacgcaagggcacgggtggaagatcatctgttagtggcattgtggctgcagttttcggatctactgggttccttggtcgatatcttgtacaacaactcgccaaaatgggaagccaggtattagttccgttccgtggttctgaagattcccatcgtcatctcaagttgatgggagatttgggacagatagtaccaatgaaatacaatccaagagacgaaaactcaattaaggcggtaatggcgaaagctaatgtggttatcaatcttattggtagagagtatgagacaagaaactttagctttgaggaagtgaatcattccatggctgaacaactcgcaatgatttccaaagaacatgggggtatcatgagatttattcaagtttcttgcttaggggcatctccctcatcaccatccagatatctaaaggctaaagctgctgcagagggtgctgttttaagtgaactaccagaggccacaattatgagacctgctgtgatgattggtacagaggatcgaattttgaatcggtgggcccatgtttcaaaaaaatatggctttcttccacttgttggggatgggtctaccaaaatccaacctgtatatgttgctgatgttgctggtgcaattgtttctgccctgcaagatgatggcacaagtatgggaaaagtttatgaacttggtgggcctgaggtctatacagtgcaccaattggcagaagttatgtttgacatgatccgagaatggccacactacgtgaagattcctctcccaattgctaaggcaattgcaatgccacgagaaatactgcttaaaaaagttccgttcccattgccaaatcctgaaatcttcaacctagatcaaatccttgcccaagcttcagatacagttgtctcagaaaatgccttgactttcaatgatcttggaattcttccccataagatcaagggctaccctattgagtttcttatccaatatcgtaagggaggcccaaactttggttctacaagtgcaaccctcttggagactgaatcaggttttcagaggctgccttcttctgttgagaaatag

Protein Analysis

444

Amino Acids

48.61

Weight (kDa)

9.52

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 763
AccB1I GGYRCC 1 cut(s) 258
AccB7I CCANNNNNTGG 2 cut(s) 836, 1262
AccI GTMKAC 1 cut(s) 848
AccII CGCG 1 cut(s) 138
AciI CCGC 1 cut(s) 497
AclWI GGATC 5 cut(s) 29, 238, 331, 786, 994
AcoI YGGCCR 1 cut(s) 1010
AcsI RAATTY 2 cut(s) 783, 1191
AcuI CTGAAG 3 cut(s) 116, 426, 1128
AdeI CACNNNGTG 1 cut(s) 1021
AfaI GTAC 5 cut(s) 227, 267, 354, 456, 772
AfiI CCNNNNNNNGG 4 cut(s) 227, 398, 836, 1262
AgsI TTSAA 5 cut(s) 644, 790, 810, 1117, 1180
AjnI CCWGG 1 cut(s) 378
AjuI GAANNNNNNNTTGG 2 cut(s) 1249, 1281
AluBI AGCT 7 cut(s) 94, 100, 212, 512, 564, 701, 1142
AluI AGCT 7 cut(s) 94, 100, 212, 512, 564, 701, 1142
Alw21I GWGCWC 1 cut(s) 972
Alw26I GTCTC 6 cut(s) 73, 471, 542, 745, 1162, 1283
Alw44I GTGCAC 1 cut(s) 968
AlwI GGATC 5 cut(s) 29, 238, 331, 786, 994
AlwNI CAGNNNCTG 1 cut(s) 1312
AoxI GGCC 5 cut(s) 738, 798, 950, 1010, 1252
ApaI GGGCCC 1 cut(s) 802
ApaLI GTGCAC 1 cut(s) 968
ApeKI GCWGC 6 cut(s) 100, 145, 311, 701, 704, 1312
ApoI RAATTY 2 cut(s) 783, 1191
AspLEI GCGC 2 cut(s) 138, 140
AspS9I GGNCC 4 cut(s) 798, 799, 950, 1253
AsuHPI GGTGA 2 cut(s) 191, 666
AxyI CCTNAGG 1 cut(s) 954
BaeGI GKGCMC 4 cut(s) 261, 278, 802, 972
BaeI ACNNNNGTAYC 2 cut(s) 1140, 1173
BalI TGGCCA 1 cut(s) 1012
BanI GGYRCC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 802
BauI CACGAG 1 cut(s) 1062
Bbv12I GWGCWC 1 cut(s) 972
BbvI GCAGC 6 cut(s) 87, 157, 298, 688, 691, 1299
BccI CCATC 6 cut(s) 35, 423, 427, 685, 836, 908
BciT130I CCWGG 1 cut(s) 380
BcoDI GTCTC 6 cut(s) 73, 471, 542, 745, 1162, 1283
BfaI CTAG 2 cut(s) 234, 1121
BfmI CTRYAG 2 cut(s) 312, 705
BfuAI ACCTGC 1 cut(s) 763
BisI GCNGC 6 cut(s) 101, 146, 312, 702, 705, 1313
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 6 cut(s) 102, 147, 313, 703, 706, 1314
Bme1390I CCNGG 1 cut(s) 380
BmgT120I GGNCC 4 cut(s) 798, 799, 950, 1253
BmiI GGNNCC 3 cut(s) 260, 335, 800
BmrFI CCNGG 1 cut(s) 380
BmrI ACTGGG 1 cut(s) 339
BmsI GCATC 2 cut(s) 108, 671
BmuI ACTGGG 1 cut(s) 339
Bpu10I CCTNAGC 2 cut(s) 655, 1044
Bpu1102I GCTNAGC 1 cut(s) 213
BpuEI CTTGAG 2 cut(s) 158, 410
BsaAI YACGTR 1 cut(s) 1021
BsaBI GATNNNNATC 2 cut(s) 26, 414
BsaI GGTCTC 2 cut(s) 73, 745
BsaJI CCNNGG 3 cut(s) 337, 397, 585
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 4 cut(s) 227, 398, 836, 1262
Bse1I ACTGG 1 cut(s) 334
Bse21I CCTNAGG 1 cut(s) 954
Bse3DI GCAATG 3 cut(s) 609, 1062, 1094
Bse8I GATNNNNATC 2 cut(s) 26, 414
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 3 cut(s) 337, 397, 585
BseGI GGATG 2 cut(s) 677, 847
BseJI GATNNNNATC 2 cut(s) 26, 414
BseLI CCNNNNNNNGG 4 cut(s) 227, 398, 836, 1262
BseMI GCAATG 3 cut(s) 609, 1062, 1094
BseMII CTCAG 5 cut(s) 5, 102, 204, 945, 1173
BseNI ACTGG 1 cut(s) 334
BsePI GCGCGC 1 cut(s) 136
BseSI GKGCMC 4 cut(s) 261, 278, 802, 972
BseXI GCAGC 6 cut(s) 87, 157, 298, 688, 691, 1299
BseYI CCCAGC 2 cut(s) 44, 140
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 5 cut(s) 740, 800, 952, 1012, 1254
BshNI GGYRCC 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 972
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 3 cut(s) 67, 204, 459
BslI CCNNNNNNNGG 4 cut(s) 227, 398, 836, 1262
BsmAI GTCTC 6 cut(s) 73, 471, 542, 745, 1162, 1283
BsmBI CGTCTC 1 cut(s) 471
BsmFI GGGAC 3 cut(s) 67, 204, 459
BsnI GGCC 5 cut(s) 740, 800, 952, 1012, 1254
Bso31I GGTCTC 2 cut(s) 73, 745
Bsp120I GGGCCC 1 cut(s) 798
Bsp1286I GDGCHC 4 cut(s) 261, 278, 802, 972
Bsp1407I TGTACA 1 cut(s) 352
Bsp1720I GCTNAGC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 585
BspACI CCGC 1 cut(s) 497
BspANI GGCC 5 cut(s) 740, 800, 952, 1012, 1254
BspCNI CTCAG 5 cut(s) 6, 101, 205, 946, 1172
BspFNI CGCG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 630
BspLI GGNNCC 3 cut(s) 260, 335, 800
BspMAI CTGCAG 2 cut(s) 316, 709
BspMI ACCTGC 1 cut(s) 763
BspPI GGATC 5 cut(s) 29, 238, 331, 786, 994
BspT107I GGYRCC 1 cut(s) 258
BspTNI GGTCTC 2 cut(s) 73, 745
BsrDI GCAATG 3 cut(s) 609, 1062, 1094
BsrGI TGTACA 1 cut(s) 352
BsrI ACTGG 1 cut(s) 334
BssECI CCNNGG 3 cut(s) 337, 397, 585
BssHII GCGCGC 1 cut(s) 136
BssSI CACGAG 1 cut(s) 1062
BssT1I CCWWGG 2 cut(s) 337, 585
Bst2BI CACGAG 1 cut(s) 1062
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 2 cut(s) 967, 1153
BstAPI GCANNNNNTGC 1 cut(s) 713
BstAUI TGTACA 1 cut(s) 352
BstBAI YACGTR 1 cut(s) 1021
BstC8I GCNNGC 2 cut(s) 123, 138
BstDEI CTNAG 8 cut(s) 14, 88, 213, 246, 655, 954, 1044, 1159
BstDSI CCRYGG 2 cut(s) 397, 585
BstF5I GGATG 2 cut(s) 677, 847
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 2 cut(s) 138, 140
BstMAI GTCTC 6 cut(s) 73, 471, 542, 745, 1162, 1283
BstMWI GCNNNNNNNGC 7 cut(s) 10, 100, 142, 503, 701, 713, 881
BstNI CCWGG 1 cut(s) 380
BstSCI CCNGG 1 cut(s) 378
BstSFI CTRYAG 2 cut(s) 312, 705
BstSLI GKGCMC 4 cut(s) 261, 278, 802, 972
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 6 cut(s) 87, 157, 298, 688, 691, 1299
BstX2I RGATCY 2 cut(s) 230, 323
BstYI RGATCY 2 cut(s) 230, 323
Bsu36I CCTNAGG 1 cut(s) 954
BsuRI GGCC 5 cut(s) 740, 800, 952, 1012, 1254
BtgI CCRYGG 2 cut(s) 397, 585
BtsCI GGATG 2 cut(s) 677, 847
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 2 cut(s) 38, 972
BveI ACCTGC 1 cut(s) 763
Cac8I GCNNGC 2 cut(s) 123, 138
CaiI CAGNNNCTG 1 cut(s) 1312
CciI TCATGA 1 cut(s) 630
CfoI GCGC 2 cut(s) 138, 140
Cfr13I GGNCC 4 cut(s) 798, 799, 950, 1253
CseI GACGC 1 cut(s) 206
Csp6I GTAC 5 cut(s) 226, 266, 353, 455, 771
CviAII CATG 5 cut(s) 586, 620, 631, 803, 997
CviQI GTAC 5 cut(s) 226, 266, 353, 455, 771
DdeI CTNAG 8 cut(s) 14, 88, 213, 246, 655, 954, 1044, 1159
DraIII CACNNNGTG 1 cut(s) 1021
EaeI YGGCCR 1 cut(s) 1010
Eco130I CCWWGG 2 cut(s) 337, 585
Eco24I GRGCYC 1 cut(s) 802
Eco31I GGTCTC 2 cut(s) 73, 745
Eco32I GATATC 3 cut(s) 152, 347, 686
Eco57I CTGAAG 3 cut(s) 116, 426, 1128
Eco81I CCTNAGG 1 cut(s) 954
EcoRI GAATTC 1 cut(s) 1191
EcoRII CCWGG 1 cut(s) 378
EcoRV GATATC 3 cut(s) 152, 347, 686
EcoT14I CCWWGG 2 cut(s) 337, 585
EcoT38I GRGCYC 1 cut(s) 802
ErhI CCWWGG 2 cut(s) 337, 585
Esp3I CGTCTC 1 cut(s) 471
FaeI CATG 5 cut(s) 589, 623, 634, 806, 1000
FaqI GGGAC 3 cut(s) 67, 204, 459
FatI CATG 5 cut(s) 585, 619, 630, 802, 996
FblI GTMKAC 1 cut(s) 848
Fnu4HI GCNGC 6 cut(s) 101, 146, 312, 702, 705, 1313
FokI GGATG 2 cut(s) 664, 854
FriOI GRGCYC 1 cut(s) 802
Fsp4HI GCNGC 6 cut(s) 101, 146, 312, 702, 705, 1313
FspBI CTAG 2 cut(s) 234, 1121
GlaI GCGC 2 cut(s) 137, 139
GluI GCNGC 6 cut(s) 101, 146, 312, 702, 705, 1313
GsaI CCCAGC 2 cut(s) 48, 144
HaeIII GGCC 5 cut(s) 740, 800, 952, 1012, 1254
HapII CCGG 1 cut(s) 65
HgaI GACGC 1 cut(s) 206
HhaI GCGC 2 cut(s) 138, 140
Hin1II CATG 5 cut(s) 589, 623, 634, 806, 1000
Hin6I GCGC 2 cut(s) 136, 138
HinP1I GCGC 2 cut(s) 136, 138
HindIII AAGCTT 1 cut(s) 1140
HinfI GANTC 7 cut(s) 55, 157, 410, 577, 790, 1027, 1295
HpaII CCGG 1 cut(s) 65
HphI GGTGA 2 cut(s) 191, 666
Hpy166II GTNNAC 4 cut(s) 36, 728, 849, 970
Hpy188I TCNGA 9 cut(s) 91, 156, 196, 323, 406, 1004, 1147, 1162, 1308
Hpy188III TCNNGA 3 cut(s) 631, 681, 1106
Hpy8I GTNNAC 4 cut(s) 36, 728, 849, 970
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 2 cut(s) 12, 1326
HpyCH4III ACNGT 2 cut(s) 967, 1153
HpyCH4IV ACGT 1 cut(s) 1020
HpyCH4V TGCA 9 cut(s) 103, 121, 314, 707, 890, 907, 970, 1055, 1277
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 100, 142, 503, 701, 713, 881
HpyF3I CTNAG 8 cut(s) 14, 88, 213, 246, 655, 954, 1044, 1159
HpySE526I ACGT 1 cut(s) 1020
Hsp92II CATG 5 cut(s) 589, 623, 634, 806, 1000
HspAI GCGC 2 cut(s) 136, 138
LmnI GCTCC 2 cut(s) 67, 209
Lsp1109I GCAGC 6 cut(s) 87, 157, 298, 688, 691, 1299
LweI GCATC 2 cut(s) 108, 671
MaeI CTAG 2 cut(s) 234, 1121
MaeII ACGT 1 cut(s) 1020
MboII GAAGA 7 cut(s) 297, 419, 818, 1036, 1105, 1187, 1311
MfeI CAATTG 4 cut(s) 891, 974, 1038, 1050
MflI RGATCY 2 cut(s) 230, 323
MhlI GDGCHC 4 cut(s) 261, 278, 802, 972
MlsI TGGCCA 1 cut(s) 1012
MluCI AATT 8 cut(s) 489, 744, 783, 891, 974, 1038, 1050, 1191
MluNI TGGCCA 1 cut(s) 1012
MmeI TCCRAC 1 cut(s) 883
Mox20I TGGCCA 1 cut(s) 1012
MscI TGGCCA 1 cut(s) 1012
MseI TTAA 3 cut(s) 492, 722, 1077
MslI CAYNNNNRTG 3 cut(s) 204, 746, 923
Msp20I TGGCCA 1 cut(s) 1012
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 380
MunI CAATTG 4 cut(s) 891, 974, 1038, 1050
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 7 cut(s) 10, 100, 142, 503, 701, 713, 881
NcoI CCATGG 1 cut(s) 585
NlaIII CATG 5 cut(s) 589, 623, 634, 806, 1000
NlaIV GGNNCC 3 cut(s) 260, 335, 800
PagI TCATGA 1 cut(s) 630
PauI GCGCGC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PfeI GAWTC 7 cut(s) 55, 157, 410, 577, 790, 1027, 1295
PflMI CCANNNNNTGG 2 cut(s) 836, 1262
PkrI GCNGC 6 cut(s) 102, 147, 313, 703, 706, 1314
Ppu21I YACGTR 1 cut(s) 1021
Psp6I CCWGG 1 cut(s) 378
PspFI CCCAGC 2 cut(s) 44, 140
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 3 cut(s) 260, 335, 800
PspOMI GGGCCC 1 cut(s) 798
PspPI GGNCC 4 cut(s) 798, 799, 950, 1253
PstI CTGCAG 2 cut(s) 316, 709
PstNI CAGNNNCTG 1 cut(s) 1312
PsuI RGATCY 2 cut(s) 230, 323
PteI GCGCGC 1 cut(s) 136
RsaI GTAC 5 cut(s) 227, 267, 354, 456, 772
RsaNI GTAC 5 cut(s) 226, 266, 353, 455, 771
RseI CAYNNNNRTG 3 cut(s) 204, 746, 923
SaqAI TTAA 3 cut(s) 492, 722, 1077
SatI GCNGC 6 cut(s) 101, 146, 312, 702, 705, 1313
Sau96I GGNCC 4 cut(s) 798, 799, 950, 1253
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 4 cut(s) 261, 278, 802, 972
SfaNI GCATC 2 cut(s) 108, 671
SfcI CTRYAG 2 cut(s) 312, 705
SmiMI CAYNNNNRTG 3 cut(s) 204, 746, 923
SmlI CTYRAG 2 cut(s) 173, 425
SmoI CTYRAG 2 cut(s) 173, 425
Sse9I AATT 8 cut(s) 489, 744, 783, 891, 974, 1038, 1050, 1191
SsiI CCGC 1 cut(s) 497
SspMI CTAG 2 cut(s) 234, 1121
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 2 cut(s) 337, 585
TaaI ACNGT 2 cut(s) 967, 1153
TaiI ACGT 1 cut(s) 1023
TaqI TCGA 2 cut(s) 343, 781
TasI AATT 8 cut(s) 489, 744, 783, 891, 974, 1038, 1050, 1191
TatI WGTACW 1 cut(s) 352
TfiI GAWTC 7 cut(s) 55, 157, 410, 577, 790, 1027, 1295
Tru1I TTAA 3 cut(s) 492, 722, 1077
Tru9I TTAA 3 cut(s) 492, 722, 1077
TscAI CASTG 2 cut(s) 45, 972
TseI GCWGC 6 cut(s) 100, 145, 311, 701, 704, 1312
TspDTI ATGAA 2 cut(s) 476, 954
TspGWI ACGGA 6 cut(s) 65, 69, 243, 381, 386, 1077
TspRI CASTG 2 cut(s) 45, 972
Van91I CCANNNNNTGG 2 cut(s) 836, 1262
VneI GTGCAC 1 cut(s) 968
XapI RAATTY 2 cut(s) 783, 1191
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 848
XspI CTAG 2 cut(s) 234, 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.