Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009359

Physical Location & Seq

Genomic Coordinates Forward (+)

18441735 .. 18444193

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g15120.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGATTGTGTTGTTTTGTGTTATTTGGAAATTTAATTTGTCTTTTTTCAGTGGCATTGTTGCTGCAGTTTTTGGATCTACGGGGTTCCTTGGGCGTTATCTTGTGCAACAACTTGCCAAAATGGGAAGTCAGGTGCTAGTTCCTTTCCGTGGTTCTGAAGACTCCCATCGCCACCTCAAGTTAATGGGGGATTTGGGACAGATAGTACCAATGAAATACAATCCAAGAGATGAAGATTCAATTAAGGCAGTCATGGCAAAAGCAAACGTGGTTATCAATCTCATTGGGAGGGATTATGAGACGAGAAACTTTAGCTTTGAGGAAGTGAATCATTCCATGGCACAACAACTGGCAACAATTTCCAAAGAACATGGGGGTATCATGAGATTCATTCAAGTTTCTTGCTTGGGGGCATCTTCCTCATCTCCCTCCAGATTTCTAAGGACTAAAGCTGCAGCAGAGGAAGCTGTTTTAAGTGAATTGCCTGAGGCCACCATTTTGAGACCTGCTGTGATGGTTGGTACTGAGGATCGAATTTTGAATCGCTGGGCATTTTTTGCGAAAAAATATGGCTTTCTTCCGCTTATTGGGGATGGATCTACCAAATTCCAACCTGTATATGTTGTTGATGTTGCTGGGGCAATCGTGGCAGCTTTGAAAGATGATGGTACCAGCATGGGAAAAGTTTATGAACTTGGTGGGCCTGAGGTCTTTACAATGCATCAATTGGCAGAGCTTATGTTTGATACAATCCGTGAATGGCCCCGCTACGTGAAGGTTCCTCTCCCAATTGCAAAGGCAATGGGAGCTCCACGAGAAATATTGCTTAACAAAGTTCCATTTCCATTACCTAATCCTGAAATCTTCAACCGAGATCAGATCCTTGCCCAAGAGACAGATACACTCGTGTCAGAAAATGCTTTGACTTTCAATGATCTTGGACTTGTGCCCCATAAGCTGAAGGGTTACCCTATTGAGTTTCTTATCCAATTTCGCAAGGGTGGCCCCAACTACGGTTCTACTGTCAGTGAAAGAGTTTCTCCAGATGCTTGGCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009628 GO:0009651 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0070469 GO:0071704 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Epimerase NAD_binding_10 NmrA

Protein Analysis

353

Amino Acids

39.06

Weight (kDa)

7.75

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20360
fragaria_vesca	FvH4_2g20370 FvH4_2g20370 FvH4_2g20370
malus_domestica	MD05G1187700.v1.1 MD10G1175400.v1.1
prunus_persica	Prupe.8G214700_v2.0.a1 Prupe.8G214700_v2.0.a1 Prupe.8G214700_v2.0.a1
pyrus_communis	pycom05g17250 pycom10g15110 pycom10g15120
rosa_chinensis	RchiOBHm_Chr6g0286481
rosa_laevigata	RLG00000012568
rosa_multiflora	Rmu_sc0004816.1_g000013 Rmu_sc0005089.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182300
rosa_rugosa	Rorug06G0180100
rosa_samantha	Rh6AG292300 Rh6CG296600 Rh6DG288400
rosa_wichuraiana	Rw6G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	514
Acc65I	GGTACC	1 cut(s)	668
AccB1I	GGYRCC	1 cut(s)	668
AciI	CCGC	2 cut(s)	581, 766
AclWI	GGATC	4 cut(s)	82, 537, 604, 874
AcoI	YGGCCR	1 cut(s)	1052
AcsI	RAATTY	3 cut(s)	29, 534, 605
AcuI	CTGAAG	2 cut(s)	177, 980
AfaI	GTAC	3 cut(s)	207, 523, 670
AfiI	CCNNNNNNNGG	3 cut(s)	149, 587, 1013
AgsI	TTSAA	6 cut(s)	240, 395, 541, 658, 868, 931
AluBI	AGCT	7 cut(s)	315, 452, 467, 653, 736, 809, 958
AluI	AGCT	7 cut(s)	315, 452, 467, 653, 736, 809, 958
Alw21I	GWGCWC	1 cut(s)	811
Alw26I	GTCTC	3 cut(s)	293, 496, 887
AlwI	GGATC	4 cut(s)	82, 537, 604, 874
AoxI	GGCC	5 cut(s)	489, 701, 761, 1003, 1052
ApeKI	GCWGC	4 cut(s)	62, 452, 455, 650
ApoI	RAATTY	3 cut(s)	29, 534, 605
Asp718I	GGTACC	1 cut(s)	668
AspS9I	GGNCC	3 cut(s)	701, 762, 1004
AxyI	CCTNAGG	2 cut(s)	486, 705
BaeGI	GKGCMC	1 cut(s)	951
BaeI	ACNNNNGTAYC	2 cut(s)	891, 924
BanI	GGYRCC	1 cut(s)	668
BanII	GRGCYC	1 cut(s)	811
BauI	CACGAG	2 cut(s)	813, 905
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	811
BbvI	GCAGC	4 cut(s)	49, 439, 467, 662
BccI	CCATC	4 cut(s)	174, 508, 587, 659
BceAI	ACGGC	1 cut(s)	1039
BcoDI	GTCTC	3 cut(s)	293, 496, 887
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	2 cut(s)	63, 453
BfuAI	ACCTGC	1 cut(s)	514
BisI	GCNGC	4 cut(s)	63, 453, 456, 651
BlsI	GCNGC	4 cut(s)	64, 454, 457, 652
BmgT120I	GGNCC	3 cut(s)	701, 762, 1004
BmiI	GGNNCC	5 cut(s)	86, 670, 764, 780, 1006
BmsI	GCATC	3 cut(s)	422, 730, 1036
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	2 cut(s)	415, 1026
BpuEI	CTTGAG	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	772
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	3 cut(s)	88, 148, 336
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 587, 1013
Bse1I	ACTGG	1 cut(s)	354
Bse21I	CCTNAGG	2 cut(s)	486, 705
Bse3DI	GCAATG	1 cut(s)	807
BseDI	CCNNGG	3 cut(s)	88, 148, 336
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	3 cut(s)	149, 587, 1013
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	3 cut(s)	477, 516, 696
BseNI	ACTGG	1 cut(s)	354
BseSI	GKGCMC	1 cut(s)	951
BseXI	GCAGC	4 cut(s)	49, 439, 467, 662
BseYI	CCCAGC	2 cut(s)	546, 635
BshFI	GGCC	5 cut(s)	491, 703, 763, 1005, 1054
BshNI	GGYRCC	1 cut(s)	668
BsiHKAI	GWGCWC	1 cut(s)	811
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	3 cut(s)	149, 587, 1013
BsmAI	GTCTC	3 cut(s)	293, 496, 887
BsmBI	CGTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	5 cut(s)	491, 703, 763, 1005, 1054
Bso31I	GGTCTC	1 cut(s)	496
Bsp1286I	GDGCHC	2 cut(s)	811, 951
Bsp143I	GATC	6 cut(s)	74, 529, 596, 874, 879, 934
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	2 cut(s)	581, 766
BspANI	GGCC	5 cut(s)	491, 703, 763, 1005, 1054
BspCNI	CTCAG	3 cut(s)	478, 517, 697
BspHI	TCATGA	1 cut(s)	381
BspLI	GGNNCC	5 cut(s)	86, 670, 764, 780, 1006
BspMAI	CTGCAG	2 cut(s)	67, 457
BspMI	ACCTGC	1 cut(s)	514
BspPI	GGATC	4 cut(s)	82, 537, 604, 874
BspT107I	GGYRCC	1 cut(s)	668
BspTNI	GGTCTC	1 cut(s)	496
BsrDI	GCAATG	1 cut(s)	807
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	3 cut(s)	88, 148, 336
BssMI	GATC	6 cut(s)	74, 529, 596, 874, 879, 934
BssSI	CACGAG	2 cut(s)	813, 905
BssT1I	CCWWGG	2 cut(s)	88, 336
Bst2BI	CACGAG	2 cut(s)	813, 905
Bst4CI	ACNGT	2 cut(s)	1016, 1024
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstBAI	YACGTR	1 cut(s)	772
BstDEI	CTNAG	4 cut(s)	440, 486, 525, 705
BstDSI	CCRYGG	2 cut(s)	148, 336
BstEII	GGTNACC	1 cut(s)	965
BstF5I	GGATG	1 cut(s)	598
BstKTI	GATC	6 cut(s)	77, 532, 599, 877, 882, 937
BstMAI	GTCTC	3 cut(s)	293, 496, 887
BstMBI	GATC	6 cut(s)	74, 529, 596, 874, 879, 934
BstMWI	GCNNNNNNNGC	7 cut(s)	254, 464, 557, 647, 806, 955, 1002
BstPI	GGTNACC	1 cut(s)	965
BstSFI	CTRYAG	2 cut(s)	63, 453
BstSLI	GKGCMC	1 cut(s)	951
BstV1I	GCAGC	4 cut(s)	49, 439, 467, 662
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	3 cut(s)	74, 596, 879
BstXI	CCANNNNNNTGG	1 cut(s)	1050
BstYI	RGATCY	3 cut(s)	74, 596, 879
Bsu36I	CCTNAGG	2 cut(s)	486, 705
BsuRI	GGCC	5 cut(s)	491, 703, 763, 1005, 1054
BtgI	CCRYGG	2 cut(s)	148, 336
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	598
BtsIMutI	CAGTG	2 cut(s)	55, 1033
BveI	ACCTGC	1 cut(s)	514
CciI	TCATGA	1 cut(s)	381
Cfr13I	GGNCC	3 cut(s)	701, 762, 1004
Csp6I	GTAC	3 cut(s)	206, 522, 669
CviAII	CATG	5 cut(s)	253, 337, 371, 382, 676
CviQI	GTAC	3 cut(s)	206, 522, 669
DdeI	CTNAG	4 cut(s)	440, 486, 525, 705
DpnI	GATC	6 cut(s)	76, 531, 598, 876, 881, 936
DpnII	GATC	6 cut(s)	74, 529, 596, 874, 879, 934
EaeI	YGGCCR	1 cut(s)	1052
Ecl136II	GAGCTC	1 cut(s)	809
Eco130I	CCWWGG	2 cut(s)	88, 336
Eco24I	GRGCYC	1 cut(s)	811
Eco31I	GGTCTC	1 cut(s)	496
Eco53kI	GAGCTC	1 cut(s)	809
Eco57I	CTGAAG	2 cut(s)	177, 980
Eco81I	CCTNAGG	2 cut(s)	486, 705
Eco91I	GGTNACC	1 cut(s)	965
EcoICRI	GAGCTC	1 cut(s)	809
EcoO65I	GGTNACC	1 cut(s)	965
EcoT14I	CCWWGG	2 cut(s)	88, 336
EcoT22I	ATGCAT	1 cut(s)	723
EcoT38I	GRGCYC	1 cut(s)	811
ErhI	CCWWGG	2 cut(s)	88, 336
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	5 cut(s)	256, 340, 374, 385, 679
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	5 cut(s)	252, 336, 370, 381, 675
FauI	CCCGC	1 cut(s)	773
Fnu4HI	GCNGC	4 cut(s)	63, 453, 456, 651
FokI	GGATG	1 cut(s)	605
FriOI	GRGCYC	1 cut(s)	811
Fsp4HI	GCNGC	4 cut(s)	63, 453, 456, 651
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	4 cut(s)	63, 453, 456, 651
GsaI	CCCAGC	2 cut(s)	550, 639
GsuI	CTGGAG	2 cut(s)	415, 1026
HaeIII	GGCC	5 cut(s)	491, 703, 763, 1005, 1054
Hin1II	CATG	5 cut(s)	256, 340, 374, 385, 679
HinfI	GANTC	5 cut(s)	161, 236, 328, 387, 541
Hpy188I	TCNGA	3 cut(s)	157, 879, 913
Hpy188III	TCNNGA	4 cut(s)	382, 432, 857, 1043
HpyAV	CCTTC	2 cut(s)	769, 955
HpyCH4III	ACNGT	2 cut(s)	1016, 1024
HpyCH4IV	ACGT	2 cut(s)	267, 771
HpyCH4V	TGCA	5 cut(s)	65, 106, 455, 721, 794
HpyF10VI	GCNNNNNNNGC	7 cut(s)	254, 464, 557, 647, 806, 955, 1002
HpyF3I	CTNAG	4 cut(s)	440, 486, 525, 705
HpySE526I	ACGT	2 cut(s)	267, 771
Hsp92II	CATG	5 cut(s)	256, 340, 374, 385, 679
KpnI	GGTACC	1 cut(s)	672
Kzo9I	GATC	6 cut(s)	74, 529, 596, 874, 879, 934
LmnI	GCTCC	2 cut(s)	806, 814
Lsp1109I	GCAGC	4 cut(s)	49, 439, 467, 662
LweI	GCATC	3 cut(s)	422, 730, 1036
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	2 cut(s)	267, 771
MaeIII	GTNAC	1 cut(s)	965
MalI	GATC	6 cut(s)	76, 531, 598, 876, 881, 936
MboI	GATC	6 cut(s)	74, 529, 596, 874, 879, 934
MboII	GAAGA	5 cut(s)	170, 245, 408, 569, 856
MfeI	CAATTG	2 cut(s)	725, 789
MflI	RGATCY	3 cut(s)	74, 596, 879
MhlI	GDGCHC	2 cut(s)	811, 951
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	634
Mph1103I	ATGCAT	1 cut(s)	723
MseI	TTAA	5 cut(s)	33, 182, 243, 473, 828
MunI	CAATTG	2 cut(s)	725, 789
MwoI	GCNNNNNNNGC	7 cut(s)	254, 464, 557, 647, 806, 955, 1002
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	6 cut(s)	74, 529, 596, 874, 879, 934
NlaIII	CATG	5 cut(s)	256, 340, 374, 385, 679
NlaIV	GGNNCC	5 cut(s)	86, 670, 764, 780, 1006
NsiI	ATGCAT	1 cut(s)	723
PagI	TCATGA	1 cut(s)	381
PfeI	GAWTC	4 cut(s)	236, 328, 387, 541
PkrI	GCNGC	4 cut(s)	64, 454, 457, 652
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	772
Psp124BI	GAGCTC	1 cut(s)	811
PspEI	GGTNACC	1 cut(s)	965
PspFI	CCCAGC	2 cut(s)	546, 635
PspN4I	GGNNCC	5 cut(s)	86, 670, 764, 780, 1006
PspPI	GGNCC	3 cut(s)	701, 762, 1004
PstI	CTGCAG	2 cut(s)	67, 457
PsuI	RGATCY	3 cut(s)	74, 596, 879
RsaI	GTAC	3 cut(s)	207, 523, 670
RsaNI	GTAC	3 cut(s)	206, 522, 669
SacI	GAGCTC	1 cut(s)	811
SaqAI	TTAA	5 cut(s)	33, 182, 243, 473, 828
SatI	GCNGC	4 cut(s)	63, 453, 456, 651
Sau3AI	GATC	6 cut(s)	74, 529, 596, 874, 879, 934
Sau96I	GGNCC	3 cut(s)	701, 762, 1004
SchI	GAGTC	1 cut(s)	155
SduI	GDGCHC	2 cut(s)	811, 951
SfaNI	GCATC	3 cut(s)	422, 730, 1036
SfcI	CTRYAG	2 cut(s)	63, 453
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SsiI	CCGC	2 cut(s)	581, 766
SspI	AATATT	1 cut(s)	822
SspMI	CTAG	1 cut(s)	137
SstI	GAGCTC	1 cut(s)	811
StyI	CCWWGG	2 cut(s)	88, 336
TaaI	ACNGT	2 cut(s)	1016, 1024
TaiI	ACGT	2 cut(s)	270, 774
TaqI	TCGA	1 cut(s)	532
TfiI	GAWTC	4 cut(s)	236, 328, 387, 541
Tru1I	TTAA	5 cut(s)	33, 182, 243, 473, 828
Tru9I	TTAA	5 cut(s)	33, 182, 243, 473, 828
TscAI	CASTG	2 cut(s)	55, 1033
TseI	GCWGC	4 cut(s)	62, 452, 455, 650
TspDTI	ATGAA	4 cut(s)	227, 246, 379, 705
TspGWI	ACGGA	2 cut(s)	137, 743
TspRI	CASTG	2 cut(s)	55, 1033
XapI	RAATTY	3 cut(s)	29, 534, 605
XspI	CTAG	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.