Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009359

Physical Location & Seq

Genomic Coordinates Forward (+)

28446392 .. 28449356

Gene Structure 2965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0180100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2838 bp

ATGGCAAGGTATGGCCACAACCACCACACCTCTCTTTTCTTCTATTTCTTTTTGTTTTGTTATCCTCTTATTCCTATGGCCTTGTCTGAACTATCCTCAACCGAAAGAGCTACCATGATCAATATCTCCAAGAGTCTAAATGTTTCATGGAACATAAACAGTGAACCAAACCCATGTCTCTGGAAAGGAGTTAAGTGTAATCCACCCACCAACTCATCTGTAACCCAAATTTCCCTGTCCAAGTTTTCTCTATCTTCCTCAGATTTCCTCCCAATTGTTTGCCAACTTGAGTCTTTGCAGATTCTTGATGTGTCAGTAAACCATCTGACCACAATCCCATCTGAGTTTCTCACAGCCTGTGGAAAGATAGATGGGCTAAAGCGACTCAATTTCAGCTTTAACAATCTGGTCTTTTCTTTACCTGACTTTGTTGGTTTTGCTGGGTTGGAGTCGTTGGACCTTTCTCATAATCACCTGAGGGGAGGCATTGGCTCAGAGTTGGATGGATTGGTTGGGCTCAGAAGCTTGAACCTCAGCTTCAACAATTTTACTGGGACTATCCCTACCCTACTTGGGGAATCCATGCTCTTGGAGGAGCTTCAGCTTTCTGTGAATGCATTTCAAGGGAAAATTCCAGTTGAAATTGCAGGGTATCGCAATTTGACTCTGATTGATTTGAGCACAAATCATCTTTCTGGTTCAGTTCCTGCGAGTTTTGGAGAGCTATCCAAGTTGGAGGTTCTGATTCTATCTTCCAATAGCTTGACTGGTGTAATCCCAGAAAGCCTTTCCAATATCACAAGCCTCACGCGGTTTGCAGCAAATTTAAACAACTTCACTGGTGCAGTTCCTGGTGGAATTACGAAACATCTCAAGAATTTGGACTTGAGTTATAATAACTTACGTGGATCGATTCCATCGGACCTTCTGTCTCCATCGGATTTGACGACTGTGGATTTGTCTAATAACTTGTTGCAGGGATCAATACCCACAAACCTGTCTCAGGGACTGGTTCGGTTGAGATTGGGAAGCAATTCACTTGTTGGGATGATACCCTCTGCAACACTCCCACTCCAGAACTTGGTGTACTTGGAAATGGAAAACAATAAGCTGAATGGTTCCATACCTCCTGAATTGGGTTCTTGCAGCAAATTGGCGCTGTTGAATTTGGCTGAGAATAGACTGTCTGGAGCTTTGCCGGTGGAGTTGGGAAACCTCACTAGTCTTCAAGTCTTGAAGCTTCAATCTAACAATCTTGCTGGAGGAATCCCAACTGCGATTACTAAACTAACGAAGTTGTCTGTTCTGAATATCAGCATGAATGCTCTGACTGGTTCAATACCAACAACCATTTCAAACTTGCAGAACCTTATCAACATGAACTTACAAGGCAACTATCTCAACGGTTCCATCCCCAACACTATTGGCTCCATGAGTTCTCTGTTGGAGCTCCAACTTGGTCACAATTCCTTGAGTGGTAACATTCCAATGATGCCAACATCTTTGCAGATTGTTTTGAATCTCAGCAGCAACCATTTTGAAGGAGAAATTCCTAATCATCTTTCCAGACTCGGTGGATTAGAAATTTTGGATCTATCTAACAACAAGTTCTCAGGTCAGATACCCTCATTTTTATCTGATCAAATGGGAGCATTGACACAGTTGATACTATCTAACAATCAGCTCTCTGGAGTTATTCCAAACTTCAATTCTTGGGTCGTGGTCAACACAACTGGAAATATGGGTTTGTTTAATGCTACCCCACCCTCATCGGTAAAGAAGGGAAATTCAAAGGCTTTGATAATTGCACTTGCAGCTGTAGCCGGTGCTGTTGCTACTGGAGCCATCACCATCCTTGCTGTATCACTATCACGGCACAGTTACAGGGTTAATGATGAACAAGTGGAGTCTGGGGAAGATGTTCCTCTTCCTGAGGTCCTCCAAGGTAGTCTCTTAACCGCCAACGCAATTCACAGATCAAGTATCGATTTCAGTACAGCCATGGAGGCAGTTTCTGACCCCGCAAACATTGAGCTCAAGACTAGGTTTTCAACTTACTACAAGGCCACAATGCCGTCTGGATCAAGCTACTTTGTCAAGAAACTCAACTGGAGTGACAAGATATTCCAATTGGGAAGCCATGACAGATTCGAGAACGATTTACAGATCTTTGGAAAACTGAGCAATTCCAATGTCATGACTCCTTTGGCCTATTTTACAACTGTTGACAGTGCTTATCTGTTCTATGAGTTTGCTCCAAAAGGCACCCTCTTTGATGCCCTTCATTGTAGCTCAGACAATGCCATGGATTGGGCAAGTAGATACAGTTCTGCGGTTGGAGTAGCTCAGGGTCTTGCTTTTCTTCATGGATGCACTTCAGGTCCAATACTCCTCCTAGACCTGTCAAGCCGAAGCATTTTGCTCAAGTCCCTCAAAGAGCCTCTTATTGGAGACGCCGAGCTCTGCAAAGTGATTGATCCCTCAAAGAGCACTGGAAGCCTTTCTACTGTTGCTGGTTCTGTTGGTTATATTCCTCCAGAGTATGCATACACTATGAGGGTTACAGTGGCCGGGAACATCTATAGCTTCGGGGTCATTCTCCTTGAATTGCTGACAGGAAGGCCAGCAGTTAGTGAAGGGATTGAGTTGGCCAATTGGGTACTAACTAACTCAGGGCAGCAAGATAAAATTCTTGATTTGACGATCAGCAGGACATCAAGTGCTGTCAGAAGCCAGATGCTAGCTGTACTGAAAGTTGCTCTTGGTTGTGTTAGTGTATCACCAGAAGCAAGGCCAAGAATGAAGACCGTTCTTAGGATGCTTCTGAACGCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009628 GO:0009651 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0070469 GO:0071704 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Epimerase NAD_binding_10 NmrA

Protein Analysis

945

Amino Acids

101.46

Weight (kDa)

6.18

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	98 - 159	1.5e-06	Leucine rich repeat
LRR_8	PF13855	219 - 272	9.7e-07	Leucine rich repeat
Pkinase	PF00069	683 - 939	5.2e-19	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	712 - 940	1.1e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20360
fragaria_vesca	FvH4_2g20370 FvH4_2g20370 FvH4_2g20370
malus_domestica	MD05G1187700.v1.1 MD10G1175400.v1.1
prunus_persica	Prupe.8G214700_v2.0.a1 Prupe.8G214700_v2.0.a1 Prupe.8G214700_v2.0.a1
pyrus_communis	pycom05g17250 pycom10g15110 pycom10g15120
rosa_chinensis	RchiOBHm_Chr6g0286481
rosa_laevigata	RLG00000012568
rosa_multiflora	Rmu_sc0004816.1_g000013 Rmu_sc0005089.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182300
rosa_rugosa	Rorug06G0180100
rosa_samantha	Rh6AG292300 Rh6CG296600 Rh6DG288400
rosa_wichuraiana	Rw6G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	894
AccB1I	GGYRCC	1 cut(s)	2264
AccB7I	CCANNNNNTGG	2 cut(s)	1081, 2310
AccII	CGCG	1 cut(s)	811
AciI	CCGC	4 cut(s)	811, 1959, 2022, 2333
AclWI	GGATC	5 cut(s)	916, 988, 1599, 2089, 2471
AcoI	YGGCCR	3 cut(s)	13, 2568, 2649
AcsI	RAATTY	9 cut(s)	228, 630, 823, 877, 1165, 1548, 1584, 1786, 2688
AcuI	CTGAAG	2 cut(s)	584, 2361
AcyI	GRCGYC	1 cut(s)	2454
AfaI	GTAC	4 cut(s)	1088, 1996, 2661, 2748
AfiI	CCNNNNNNNGG	8 cut(s)	573, 574, 1003, 1081, 1136, 2310, 2447, 2814
AhdI	GACNNNNNGTC	1 cut(s)	928
AhlI	ACTAGT	1 cut(s)	1220
AjnI	CCWGG	1 cut(s)	850
AjuI	GAANNNNNNNTTGG	4 cut(s)	1336, 1368, 1693, 1725
Alw21I	GWGCWC	5 cut(s)	683, 1452, 2037, 2463, 2492
Alw26I	GTCTC	5 cut(s)	182, 936, 1005, 1955, 2445
AlwI	GGATC	5 cut(s)	916, 988, 1599, 2089, 2471
AlwNI	CAGNNNCTG	4 cut(s)	707, 851, 1009, 2015
AoxI	GGCC	8 cut(s)	13, 78, 2064, 2208, 2568, 2621, 2649, 2792
ApeKI	GCWGC	5 cut(s)	818, 1146, 1527, 1814, 2677
ApoI	RAATTY	9 cut(s)	228, 630, 823, 877, 1165, 1548, 1584, 1786, 2688
ArsI	GACNNNNNNTTYG	2 cut(s)	940, 972
Asp700I	GAANNNNTTC	3 cut(s)	1033, 1920, 2500
AspLEI	GCGC	1 cut(s)	1159
AspS9I	GGNCC	4 cut(s)	457, 922, 1936, 2381
AsuC2I	CCSGG	1 cut(s)	2572
AsuHPI	GGTGA	3 cut(s)	464, 1840, 2772
AsuNHI	GCTAGC	1 cut(s)	2740
AvaII	GGWCC	4 cut(s)	457, 922, 1936, 2381
AxyI	CCTNAGG	2 cut(s)	476, 1932
BalI	TGGCCA	2 cut(s)	15, 2651
BanI	GGYRCC	1 cut(s)	2264
BanII	GRGCYC	4 cut(s)	519, 1452, 2037, 2463
BarI	GAAGNNNNNNTAC	2 cut(s)	2488, 2520
BbsI	GAAGAC	2 cut(s)	1217, 2810
Bbv12I	GWGCWC	5 cut(s)	683, 1452, 2037, 2463, 2492
BbvCI	CCTCAGC	1 cut(s)	533
BbvI	GCAGC	5 cut(s)	830, 1158, 1539, 1826, 2689
BccI	CCATC	9 cut(s)	330, 346, 365, 497, 925, 943, 1418, 1853, 1859
BceAI	ACGGC	2 cut(s)	1889, 2059
BciT130I	CCWGG	1 cut(s)	852
BclI	TGATCA	2 cut(s)	117, 1639
BcnI	CCSGG	1 cut(s)	2572
BcoDI	GTCTC	5 cut(s)	182, 936, 1005, 1955, 2445
BcuI	ACTAGT	1 cut(s)	1220
BfaI	CTAG	4 cut(s)	1221, 2043, 2396, 2741
BfmI	CTRYAG	2 cut(s)	1818, 2581
BfoI	RGCGCY	1 cut(s)	1160
BglI	GCCNNNNNGGC	1 cut(s)	2006
BglII	AGATCT	1 cut(s)	2166
BisI	GCNGC	5 cut(s)	819, 1147, 1528, 1815, 2678
BlsI	GCNGC	5 cut(s)	820, 1148, 1529, 1816, 2679
Bme1390I	CCNGG	2 cut(s)	852, 2572
Bme18I	GGWCC	4 cut(s)	457, 922, 1936, 2381
BmeRI	GACNNNNNGTC	1 cut(s)	928
BmgT120I	GGNCC	4 cut(s)	457, 922, 1936, 2381
BmiI	GGNNCC	5 cut(s)	1120, 1408, 1429, 1843, 2266
BmrFI	CCNGG	2 cut(s)	852, 2572
BmrI	ACTGGG	1 cut(s)	561
BmsI	GCATC	5 cut(s)	1482, 2266, 2360, 2727, 2808
BmtI	GCTAGC	1 cut(s)	2744
BmuI	ACTGGG	1 cut(s)	561
BpiI	GAAGAC	2 cut(s)	1217, 2810
BpmI	CTGGAG	7 cut(s)	1058, 1209, 1281, 1710, 1860, 2131, 2520
Bpu10I	CCTNAGC	2 cut(s)	533, 2346
BpuEI	CTTGAG	6 cut(s)	308, 857, 907, 1492, 2021, 2408
BpuMI	CCSGG	1 cut(s)	2572
Bsa29I	ATCGAT	2 cut(s)	911, 1986
BsaAI	YACGTR	1 cut(s)	905
BsaBI	GATNNNNATC	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	2454
BsaJI	CCNNGG	3 cut(s)	1942, 2001, 2304
BsaXI	ACNNNNNCTCC	2 cut(s)	1056, 1086
Bsc4I	CCNNNNNNNGG	8 cut(s)	573, 574, 1003, 1081, 1136, 2310, 2447, 2814
Bse118I	RCCGGY	2 cut(s)	1198, 1823
Bse21I	CCTNAGG	2 cut(s)	476, 1932
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	852
BseCI	ATCGAT	2 cut(s)	911, 1986
BseDI	CCNNGG	3 cut(s)	1942, 2001, 2304
BseGI	GGATG	6 cut(s)	508, 1053, 1410, 1851, 2375, 2823
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	8 cut(s)	573, 574, 1003, 1081, 1136, 2310, 2447, 2814
BseRI	GAGGAG	2 cut(s)	608, 2381
BseXI	GCAGC	5 cut(s)	830, 1158, 1539, 1826, 2689
BseYI	CCCAGC	1 cut(s)	440
BsgI	GTGCAG	1 cut(s)	864
Bsh1236I	CGCG	1 cut(s)	811
BshFI	GGCC	8 cut(s)	15, 80, 2066, 2210, 2570, 2623, 2651, 2794
BshNI	GGYRCC	1 cut(s)	2264
BshVI	ATCGAT	2 cut(s)	911, 1986
BsiHKAI	GWGCWC	5 cut(s)	683, 1452, 2037, 2463, 2492
BsiSI	CCGG	3 cut(s)	1199, 1824, 2571
BslFI	GGGAC	3 cut(s)	568, 1020, 2413
BslI	CCNNNNNNNGG	8 cut(s)	573, 574, 1003, 1081, 1136, 2310, 2447, 2814
BsmAI	GTCTC	5 cut(s)	182, 936, 1005, 1955, 2445
BsmBI	CGTCTC	1 cut(s)	2445
BsmFI	GGGAC	3 cut(s)	568, 1020, 2413
BsmI	GAATGC	2 cut(s)	619, 1327
BsnI	GGCC	8 cut(s)	15, 80, 2066, 2210, 2570, 2623, 2651, 2794
Bsp1286I	GDGCHC	6 cut(s)	519, 683, 1452, 2037, 2463, 2492
Bsp19I	CCATGG	2 cut(s)	2001, 2304
BspACI	CCGC	4 cut(s)	811, 1959, 2022, 2333
BspANI	GGCC	8 cut(s)	15, 80, 2066, 2210, 2570, 2623, 2651, 2794
BspDI	ATCGAT	2 cut(s)	911, 1986
BspFNI	CGCG	1 cut(s)	811
BspHI	TCATGA	1 cut(s)	2196
BspLI	GGNNCC	5 cut(s)	1120, 1408, 1429, 1843, 2266
BspOI	GCTAGC	1 cut(s)	2744
BspPI	GGATC	5 cut(s)	916, 988, 1599, 2089, 2471
BspT107I	GGYRCC	1 cut(s)	2264
BsrFI	RCCGGY	2 cut(s)	1198, 1823
BssAI	RCCGGY	2 cut(s)	1198, 1823
BssECI	CCNNGG	3 cut(s)	1942, 2001, 2304
BssNI	GRCGYC	1 cut(s)	2454
BssT1I	CCWWGG	3 cut(s)	1942, 2001, 2304
Bst2UI	CCWGG	1 cut(s)	852
Bst6I	CTCTTC	1 cut(s)	1932
BstACI	GRCGYC	1 cut(s)	2454
BstBAI	YACGTR	1 cut(s)	905
BstC8I	GCNNGC	2 cut(s)	2625, 2742
BstDSI	CCRYGG	2 cut(s)	2001, 2304
BstENI	CCTNNNNNAGG	1 cut(s)	1001
BstF5I	GGATG	6 cut(s)	508, 1053, 1410, 1851, 2375, 2823
BstFNI	CGCG	1 cut(s)	811
BstH2I	RGCGCY	1 cut(s)	1160
BstHHI	GCGC	1 cut(s)	1159
BstMAI	GTCTC	5 cut(s)	182, 936, 1005, 1955, 2445
BstMWI	GCNNNNNNNGC	5 cut(s)	1814, 1820, 1841, 2006, 2496
BstNI	CCWGG	1 cut(s)	852
BstSCI	CCNGG	2 cut(s)	850, 2570
BstSFI	CTRYAG	2 cut(s)	1818, 2581
BstUI	CGCG	1 cut(s)	811
BstV1I	GCAGC	5 cut(s)	830, 1158, 1539, 1826, 2689
BstV2I	GAAGAC	2 cut(s)	1217, 2810
BstX2I	RGATCY	2 cut(s)	1591, 2166
BstXI	CCANNNNNNTGG	2 cut(s)	180, 589
BstYI	RGATCY	2 cut(s)	1591, 2166
Bsu15I	ATCGAT	2 cut(s)	911, 1986
Bsu36I	CCTNAGG	2 cut(s)	476, 1932
BsuRI	GGCC	8 cut(s)	15, 80, 2066, 2210, 2570, 2623, 2651, 2794
BsuTUI	ATCGAT	2 cut(s)	911, 1986
BtgI	CCRYGG	2 cut(s)	2001, 2304
BtsCI	GGATG	6 cut(s)	508, 1053, 1410, 1851, 2375, 2823
BtsIMutI	CAGTG	5 cut(s)	166, 837, 2236, 2490, 2571
Cac8I	GCNNGC	2 cut(s)	2625, 2742
CaiI	CAGNNNCTG	4 cut(s)	707, 851, 1009, 2015
CciI	TCATGA	1 cut(s)	2196
CfoI	GCGC	1 cut(s)	1159
Cfr10I	RCCGGY	2 cut(s)	1198, 1823
Cfr13I	GGNCC	4 cut(s)	457, 922, 1936, 2381
ClaI	ATCGAT	2 cut(s)	911, 1986
CseI	GACGC	1 cut(s)	2462
Csp6I	GTAC	4 cut(s)	1087, 1995, 2660, 2747
CviQI	GTAC	4 cut(s)	1087, 1995, 2660, 2747
DraI	TTTAAA	1 cut(s)	828
DriI	GACNNNNNGTC	1 cut(s)	928
EaeI	YGGCCR	3 cut(s)	13, 2568, 2649
Eam1104I	CTCTTC	1 cut(s)	1932
Eam1105I	GACNNNNNGTC	1 cut(s)	928
EarI	CTCTTC	1 cut(s)	1932
Ecl136II	GAGCTC	3 cut(s)	1450, 2035, 2461
Eco130I	CCWWGG	3 cut(s)	1942, 2001, 2304
Eco24I	GRGCYC	4 cut(s)	519, 1452, 2037, 2463
Eco47I	GGWCC	4 cut(s)	457, 922, 1936, 2381
Eco53kI	GAGCTC	3 cut(s)	1450, 2035, 2461
Eco57I	CTGAAG	2 cut(s)	584, 2361
Eco81I	CCTNAGG	2 cut(s)	476, 1932
EcoICRI	GAGCTC	3 cut(s)	1450, 2035, 2461
EcoNI	CCTNNNNNAGG	1 cut(s)	1001
EcoO109I	RGGNCCY	1 cut(s)	1936
EcoRII	CCWGG	1 cut(s)	850
EcoT14I	CCWWGG	3 cut(s)	1942, 2001, 2304
EcoT22I	ATGCAT	2 cut(s)	619, 2548
EcoT38I	GRGCYC	4 cut(s)	519, 1452, 2037, 2463
ErhI	CCWWGG	3 cut(s)	1942, 2001, 2304
Esp3I	CGTCTC	1 cut(s)	2445
FalI	AAGNNNNNCTT	4 cut(s)	2427, 2459, 2745, 2777
FaqI	GGGAC	3 cut(s)	568, 1020, 2413
FauI	CCCGC	1 cut(s)	2029
FbaI	TGATCA	2 cut(s)	117, 1639
Fnu4HI	GCNGC	5 cut(s)	819, 1147, 1528, 1815, 2678
FokI	GGATG	6 cut(s)	515, 1060, 1397, 1838, 2382, 2830
FriOI	GRGCYC	4 cut(s)	519, 1452, 2037, 2463
Fsp4HI	GCNGC	5 cut(s)	819, 1147, 1528, 1815, 2678
FspBI	CTAG	4 cut(s)	1221, 2043, 2396, 2741
GlaI	GCGC	1 cut(s)	1158
GluI	GCNGC	5 cut(s)	819, 1147, 1528, 1815, 2678
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	7 cut(s)	1058, 1209, 1281, 1710, 1860, 2131, 2520
HaeII	RGCGCY	1 cut(s)	1160
HaeIII	GGCC	8 cut(s)	15, 80, 2066, 2210, 2570, 2623, 2651, 2794
HapII	CCGG	3 cut(s)	1199, 1824, 2571
HgaI	GACGC	1 cut(s)	2462
HhaI	GCGC	1 cut(s)	1159
Hin1I	GRCGYC	1 cut(s)	2454
Hin6I	GCGC	1 cut(s)	1157
HinP1I	GCGC	1 cut(s)	1157
HincII	GTYRAC	2 cut(s)	1726, 2227
HindII	GTYRAC	2 cut(s)	1726, 2227
HindIII	AAGCTT	2 cut(s)	523, 1238
HpaII	CCGG	3 cut(s)	1199, 1824, 2571
HphI	GGTGA	3 cut(s)	464, 1840, 2772
Hpy166II	GTNNAC	5 cut(s)	164, 319, 1087, 1726, 2227
Hpy8I	GTNNAC	5 cut(s)	164, 319, 1087, 1726, 2227
HpyAV	CCTTC	6 cut(s)	935, 1535, 1774, 2291, 2613, 2630
HpyCH4IV	ACGT	1 cut(s)	904
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1814, 1820, 1841, 2006, 2496
HpySE526I	ACGT	1 cut(s)	904
Hsp92I	GRCGYC	1 cut(s)	2454
HspAI	GCGC	1 cut(s)	1157
Ksp22I	TGATCA	2 cut(s)	117, 1639
LmnI	GCTCC	8 cut(s)	595, 1190, 1433, 1447, 1455, 1649, 1841, 2260
Lsp1109I	GCAGC	5 cut(s)	830, 1158, 1539, 1826, 2689
LweI	GCATC	5 cut(s)	1482, 2266, 2360, 2727, 2808
MaeI	CTAG	4 cut(s)	1221, 2043, 2396, 2741
MaeII	ACGT	1 cut(s)	904
MaeIII	GTNAC	6 cut(s)	220, 1460, 1478, 1880, 2114, 2560
MboII	GAAGA	8 cut(s)	31, 246, 744, 1217, 1919, 1928, 2354, 2815
MfeI	CAATTG	3 cut(s)	273, 2129, 2653
MflI	RGATCY	2 cut(s)	1591, 2166
MhlI	GDGCHC	6 cut(s)	519, 683, 1452, 2037, 2463, 2492
MlsI	TGGCCA	2 cut(s)	15, 2651
MluNI	TGGCCA	2 cut(s)	15, 2651
MlyI	GAGTC	8 cut(s)	142, 299, 378, 458, 658, 1563, 1916, 2194
MmeI	TCCRAC	7 cut(s)	426, 435, 480, 714, 1425, 1477, 2317
Mox20I	TGGCCA	2 cut(s)	15, 2651
Mph1103I	ATGCAT	2 cut(s)	619, 2548
MroXI	GAANNNNTTC	3 cut(s)	1033, 1920, 2500
MscI	TGGCCA	2 cut(s)	15, 2651
MseI	TTAA	6 cut(s)	192, 399, 827, 1752, 1890, 1955
MslI	CAYNNNNRTG	1 cut(s)	1487
Msp20I	TGGCCA	2 cut(s)	15, 2651
MspA1I	CMGCKG	1 cut(s)	1817
MspI	CCGG	3 cut(s)	1199, 1824, 2571
MspR9I	CCNGG	2 cut(s)	852, 2572
MunI	CAATTG	3 cut(s)	273, 2129, 2653
Mva1269I	GAATGC	2 cut(s)	619, 1327
MvaI	CCWGG	1 cut(s)	852
MvnI	CGCG	1 cut(s)	811
MwoI	GCNNNNNNNGC	5 cut(s)	1814, 1820, 1841, 2006, 2496
NciI	CCSGG	1 cut(s)	2572
NcoI	CCATGG	2 cut(s)	2001, 2304
NheI	GCTAGC	1 cut(s)	2740
NlaIV	GGNNCC	5 cut(s)	1120, 1408, 1429, 1843, 2266
NmeAIII	GCCGAG	1 cut(s)	2482
NmuCI	GTSAC	2 cut(s)	1460, 2114
NsiI	ATGCAT	2 cut(s)	619, 2548
PagI	TCATGA	1 cut(s)	2196
PcsI	WCGNNNNNNNCGW	1 cut(s)	944
PctI	GAATGC	2 cut(s)	619, 1327
PdmI	GAANNNNTTC	3 cut(s)	1033, 1920, 2500
PfeI	GAWTC	7 cut(s)	301, 578, 745, 913, 1266, 1519, 2148
PflMI	CCANNNNNTGG	2 cut(s)	1081, 2310
PkrI	GCNGC	5 cut(s)	820, 1148, 1529, 1816, 2679
PleI	GAGTC	8 cut(s)	141, 298, 378, 457, 658, 1563, 1915, 2194
PpsI	GAGTC	8 cut(s)	141, 298, 378, 457, 658, 1563, 1915, 2194
Ppu21I	YACGTR	1 cut(s)	905
PpuMI	RGGWCCY	1 cut(s)	1936
PsiI	TTATAA	1 cut(s)	894
Psp124BI	GAGCTC	3 cut(s)	1452, 2037, 2463
Psp5II	RGGWCCY	1 cut(s)	1936
Psp6I	CCWGG	1 cut(s)	850
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	5 cut(s)	1120, 1408, 1429, 1843, 2266
PspPI	GGNCC	4 cut(s)	457, 922, 1936, 2381
PspPPI	RGGWCCY	1 cut(s)	1936
PsrI	GAACNNNNNNTAC	4 cut(s)	1070, 1102, 2311, 2343
PstNI	CAGNNNCTG	4 cut(s)	707, 851, 1009, 2015
PsuI	RGATCY	2 cut(s)	1591, 2166
PvuII	CAGCTG	1 cut(s)	1817
RsaI	GTAC	4 cut(s)	1088, 1996, 2661, 2748
RsaNI	GTAC	4 cut(s)	1087, 1995, 2660, 2747
RseI	CAYNNNNRTG	1 cut(s)	1487
SacI	GAGCTC	3 cut(s)	1452, 2037, 2463
SaqAI	TTAA	6 cut(s)	192, 399, 827, 1752, 1890, 1955
SatI	GCNGC	5 cut(s)	819, 1147, 1528, 1815, 2678
Sau96I	GGNCC	4 cut(s)	457, 922, 1936, 2381
SchI	GAGTC	8 cut(s)	142, 299, 378, 458, 658, 1563, 1916, 2194
ScrFI	CCNGG	2 cut(s)	852, 2572
SduI	GDGCHC	6 cut(s)	519, 683, 1452, 2037, 2463, 2492
SfaNI	GCATC	5 cut(s)	1482, 2266, 2360, 2727, 2808
SfcI	CTRYAG	2 cut(s)	1818, 2581
SinI	GGWCC	4 cut(s)	457, 922, 1936, 2381
SmiMI	CAYNNNNRTG	1 cut(s)	1487
SmlI	CTYRAG	6 cut(s)	287, 872, 886, 1471, 2036, 2423
SmoI	CTYRAG	6 cut(s)	287, 872, 886, 1471, 2036, 2423
SpeI	ACTAGT	1 cut(s)	1220
SsiI	CCGC	4 cut(s)	811, 1959, 2022, 2333
SspMI	CTAG	4 cut(s)	1221, 2043, 2396, 2741
SstI	GAGCTC	3 cut(s)	1452, 2037, 2463
StyD4I	CCNGG	2 cut(s)	850, 2570
StyI	CCWWGG	3 cut(s)	1942, 2001, 2304
TaiI	ACGT	1 cut(s)	907
TaqI	TCGA	3 cut(s)	911, 1986, 2151
TatI	WGTACW	3 cut(s)	1086, 1994, 2746
TfiI	GAWTC	7 cut(s)	301, 578, 745, 913, 1266, 1519, 2148
Tru1I	TTAA	6 cut(s)	192, 399, 827, 1752, 1890, 1955
Tru9I	TTAA	6 cut(s)	192, 399, 827, 1752, 1890, 1955
TscAI	CASTG	5 cut(s)	166, 844, 2236, 2497, 2571
TseFI	GTSAC	2 cut(s)	1460, 2114
TseI	GCWGC	5 cut(s)	818, 1146, 1527, 1814, 2677
Tsp45I	GTSAC	2 cut(s)	1460, 2114
TspDTI	ATGAA	7 cut(s)	135, 1334, 1394, 1911, 2273, 2354, 2816
TspRI	CASTG	5 cut(s)	166, 844, 2236, 2497, 2571
Van91I	CCANNNNNTGG	2 cut(s)	1081, 2310
VpaK11BI	GGWCC	4 cut(s)	457, 922, 1936, 2381
XagI	CCTNNNNNAGG	1 cut(s)	1001
XapI	RAATTY	9 cut(s)	228, 630, 823, 877, 1165, 1548, 1584, 1786, 2688
XmnI	GAANNNNTTC	3 cut(s)	1033, 1920, 2500
XspI	CTAG	4 cut(s)	1221, 2043, 2396, 2741
Zsp2I	ATGCAT	2 cut(s)	619, 2548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.