MD05G1187700.v1.1

NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
31581431 .. 31585573
4143 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1187700.v1.1.491

Sequence Viewer

Length: 1200 bp
ATGCAGGCCGTCTCGAAGCGCGTTGGGCACCAGTATCTGACCCAATCATCTTCCATCTCGTCGCTCAAGTCAATTTACCCCCTTTCCGATCACTATTATGGAGCTGATCGTCCAAAATACGGATCTACCCTCGCCACCAAGGGAGTGGGGCACCTTGTGCGCAAGGGAACAGGTGGAAGATCATCTGTTAGTGGCATTGTTGCTGCAGTCTTTGGATCTACGGGGTTCCTTGGGCGTTATCTTGTGCAACAACTTGCCAAAATGGGAAGTCAGGTGTTAGTTCCTTTCCGTGGTTCTGAGGACTCCCATCGTCACCTCAAGTTAATGGGGGATTTGGGACAGATAGTACCAATGAAATACAATCCGCGAGATGAAGATTCAATTAAGGCAGTCATGGCAAAAGCAAACGTGGTTATCAATCTCATTGGGAGGGATTTTGAGACAAGAAACTTTAGCTTTGAGGAAGTGAATCATTCCATGGCACAACAACTGGCAACGATTTCCAAAGAACATGGGGGTATCATGAGATTTATTCAAGTTTCTTGCTTGGGGGCATCTTCCTCGTCCCCCTCCAGATTCTTAAGTACTAAAGCTACTGCAGAGGAAGCTGTTTTAAGTGAATTGCCTGAGGCCACCATTTTGAGACCTGCTGTGATGGTTGGTACTGAGGATCGGATTTTGAATCGCTGGGCCTTTTTTGCAAAAAAATATGGCTTTCTTCCGCTTATTGGGGATGGATCTACGAAATTCCAACCGGTATATGTTGTTGATGTTGCTGGGGCAATCGTGGCAGCCTTGAAAGATGATGGTACCAGCATGGGAAAAATTTATGAACTTGGTGGGCCTGAGGTCTTTACAATGCATCAATTGGCAGAGCTTATGTTTGATACAATCCGTGAATGGCCTCGCTACGTGAAGGTTCCTCTCCCAATTGCAAAGGCAATGGGAGCTCCACGAGAAATATTGCTCAACAAAGTTCCATTTCCATTACCTAATCCTGAAATCTTCAACCGAGATCAAATCCTTGCCCAAGCTACAGATACACTTGTGTCAGAAAATGCTTTGACATTCAGTGATCTTGGACTTGTGCCCCATAAGCTGAAGGGTTACCCTATTGAGTATCTTATCCAATTTCGCAAGGGTGGCCCAAATTACGGTTCTACAGTCAGTGAAAGAGTGTCTCCAGATGCTTGGCCATGA

Protein Analysis

400

Amino Acids

43.71

Weight (kDa)

9.23

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 69 - 280 4.8e-12 NAD dependent epimerase/dehydratase family
NmrA PF05368 69 - 315 3.9e-09 NmrA-like family
NAD_binding_10 PF13460 72 - 218 7e-08 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 161
Acc36I ACCTGC 1 cut(s) 655
Acc65I GGTACC 1 cut(s) 809
AccB1I GGYRCC 3 cut(s) 27, 150, 809
AccII CGCG 2 cut(s) 21, 367
AciI CCGC 2 cut(s) 365, 722
AclWI GGATC 4 cut(s) 130, 223, 678, 745
AcoI YGGCCR 1 cut(s) 1193
AcsI RAATTY 2 cut(s) 746, 825
AcuI CTGAAG 1 cut(s) 1121
AdeI CACNNNGTG 1 cut(s) 157
AfaI GTAC 4 cut(s) 348, 586, 664, 811
AfiI CCNNNNNNNGG 4 cut(s) 119, 290, 728, 1154
AflII CTTAAG 1 cut(s) 580
AgeI ACCGGT 1 cut(s) 754
AgsI TTSAA 5 cut(s) 381, 536, 682, 799, 1009
AjuI GAANNNNNNNTTGG 2 cut(s) 1141, 1173
AluBI AGCT 8 cut(s) 104, 456, 593, 608, 877, 950, 1034, 1099
AluI AGCT 8 cut(s) 104, 456, 593, 608, 877, 950, 1034, 1099
Alw21I GWGCWC 1 cut(s) 952
Alw26I GTCTC 4 cut(s) 16, 434, 637, 1185
AlwI GGATC 4 cut(s) 130, 223, 678, 745
AlwNI CAGNNNCTG 1 cut(s) 37
AoxI GGCC 7 cut(s) 6, 630, 690, 842, 902, 1144, 1193
ApeKI GCWGC 2 cut(s) 203, 791
ApoI RAATTY 2 cut(s) 746, 825
AsiGI ACCGGT 1 cut(s) 754
Asp718I GGTACC 1 cut(s) 809
AspLEI GCGC 2 cut(s) 21, 162
AspS9I GGNCC 3 cut(s) 690, 842, 1145
AsuHPI GGTGA 1 cut(s) 305
AxyI CCTNAGG 2 cut(s) 627, 846
BaeGI GKGCMC 3 cut(s) 30, 153, 1092
BaeI ACNNNNGTAYC 2 cut(s) 1032, 1065
BalI TGGCCA 1 cut(s) 1195
BanI GGYRCC 3 cut(s) 27, 150, 809
BanII GRGCYC 1 cut(s) 952
BauI CACGAG 1 cut(s) 954
Bbv12I GWGCWC 1 cut(s) 952
BbvI GCAGC 2 cut(s) 190, 803
BccI CCATC 5 cut(s) 62, 315, 649, 728, 800
BcgI CGANNNNNNTGC 2 cut(s) 543, 577
BcoDI GTCTC 4 cut(s) 16, 434, 637, 1185
BfmI CTRYAG 4 cut(s) 204, 597, 1035, 1161
BfrI CTTAAG 1 cut(s) 580
BfuAI ACCTGC 1 cut(s) 655
BisI GCNGC 2 cut(s) 204, 792
BlsI GCNGC 2 cut(s) 205, 793
BmcAI AGTACT 1 cut(s) 586
BmgT120I GGNCC 3 cut(s) 690, 842, 1145
BmiI GGNNCC 5 cut(s) 29, 152, 227, 811, 921
BmsI GCATC 3 cut(s) 563, 871, 1177
BpmI CTGGAG 2 cut(s) 556, 1167
BpuEI CTTGAG 2 cut(s) 50, 302
BsaAI YACGTR 1 cut(s) 913
BsaI GGTCTC 1 cut(s) 637
BsaJI CCNNGG 4 cut(s) 138, 229, 289, 477
BsaWI WCCGGW 1 cut(s) 754
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 290, 728, 1154
Bse118I RCCGGY 1 cut(s) 754
Bse1I ACTGG 2 cut(s) 31, 495
Bse21I CCTNAGG 2 cut(s) 627, 846
Bse3DI GCAATG 1 cut(s) 948
BseDI CCNNGG 4 cut(s) 138, 229, 289, 477
BseGI GGATG 1 cut(s) 739
BseLI CCNNNNNNNGG 4 cut(s) 119, 290, 728, 1154
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 4 cut(s) 288, 618, 657, 837
BseNI ACTGG 2 cut(s) 31, 495
BseSI GKGCMC 3 cut(s) 30, 153, 1092
BseXI GCAGC 2 cut(s) 190, 803
BseYI CCCAGC 2 cut(s) 687, 776
Bsh1236I CGCG 2 cut(s) 21, 367
BshFI GGCC 7 cut(s) 8, 632, 692, 844, 904, 1146, 1195
BshNI GGYRCC 3 cut(s) 27, 150, 809
BshTI ACCGGT 1 cut(s) 754
BsiHKAI GWGCWC 1 cut(s) 952
BsiSI CCGG 1 cut(s) 755
BslFI GGGAC 2 cut(s) 351, 550
BslI CCNNNNNNNGG 4 cut(s) 119, 290, 728, 1154
BsmAI GTCTC 4 cut(s) 16, 434, 637, 1185
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 351, 550
BsnI GGCC 7 cut(s) 8, 632, 692, 844, 904, 1146, 1195
Bso31I GGTCTC 1 cut(s) 637
Bsp1286I GDGCHC 4 cut(s) 30, 153, 952, 1092
Bsp143I GATC 9 cut(s) 88, 106, 122, 179, 215, 670, 737, 1015, 1075
Bsp19I CCATGG 1 cut(s) 477
BspACI CCGC 2 cut(s) 365, 722
BspANI GGCC 7 cut(s) 8, 632, 692, 844, 904, 1146, 1195
BspCNI CTCAG 4 cut(s) 289, 619, 658, 838
BspFNI CGCG 2 cut(s) 21, 367
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 5 cut(s) 29, 152, 227, 811, 921
BspMAI CTGCAG 2 cut(s) 208, 601
BspMI ACCTGC 1 cut(s) 655
BspPI GGATC 4 cut(s) 130, 223, 678, 745
BspT107I GGYRCC 3 cut(s) 27, 150, 809
BspTI CTTAAG 1 cut(s) 580
BspTNI GGTCTC 1 cut(s) 637
BsrDI GCAATG 1 cut(s) 948
BsrFI RCCGGY 1 cut(s) 754
BsrI ACTGG 2 cut(s) 31, 495
BssAI RCCGGY 1 cut(s) 754
BssECI CCNNGG 4 cut(s) 138, 229, 289, 477
BssMI GATC 9 cut(s) 88, 106, 122, 179, 215, 670, 737, 1015, 1075
BssSI CACGAG 1 cut(s) 954
BssT1I CCWWGG 3 cut(s) 138, 229, 477
Bst2BI CACGAG 1 cut(s) 954
Bst4CI ACNGT 2 cut(s) 1157, 1165
BstAFI CTTAAG 1 cut(s) 580
BstAPI GCANNNNNTGC 1 cut(s) 157
BstBAI YACGTR 1 cut(s) 913
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 297, 627, 666, 846
BstDSI CCRYGG 2 cut(s) 289, 477
BstEII GGTNACC 1 cut(s) 1106
BstF5I GGATG 1 cut(s) 739
BstFNI CGCG 2 cut(s) 21, 367
BstHHI GCGC 2 cut(s) 21, 162
BstKTI GATC 9 cut(s) 91, 109, 125, 182, 218, 673, 740, 1018, 1078
BstMAI GTCTC 4 cut(s) 16, 434, 637, 1185
BstMBI GATC 9 cut(s) 88, 106, 122, 179, 215, 670, 737, 1015, 1075
BstMWI GCNNNNNNNGC 9 cut(s) 25, 157, 395, 605, 698, 788, 947, 1096, 1143
BstPI GGTNACC 1 cut(s) 1106
BstSFI CTRYAG 4 cut(s) 204, 597, 1035, 1161
BstSLI GKGCMC 3 cut(s) 30, 153, 1092
BstUI CGCG 2 cut(s) 21, 367
BstV1I GCAGC 2 cut(s) 190, 803
BstX2I RGATCY 3 cut(s) 122, 215, 737
BstXI CCANNNNNNTGG 2 cut(s) 145, 1191
BstYI RGATCY 3 cut(s) 122, 215, 737
Bsu36I CCTNAGG 2 cut(s) 627, 846
BsuRI GGCC 7 cut(s) 8, 632, 692, 844, 904, 1146, 1195
BtgI CCRYGG 2 cut(s) 289, 477
BtsCI GGATG 1 cut(s) 739
BtsIMutI CAGTG 2 cut(s) 1078, 1174
BveI ACCTGC 1 cut(s) 655
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 37
CciI TCATGA 1 cut(s) 522
CfoI GCGC 2 cut(s) 21, 162
Cfr10I RCCGGY 1 cut(s) 754
Cfr13I GGNCC 3 cut(s) 690, 842, 1145
Csp6I GTAC 4 cut(s) 347, 585, 663, 810
CspAI ACCGGT 1 cut(s) 754
CviAII CATG 6 cut(s) 394, 478, 512, 523, 817, 1197
CviQI GTAC 4 cut(s) 347, 585, 663, 810
DdeI CTNAG 4 cut(s) 297, 627, 666, 846
DpnI GATC 9 cut(s) 90, 108, 124, 181, 217, 672, 739, 1017, 1077
DpnII GATC 9 cut(s) 88, 106, 122, 179, 215, 670, 737, 1015, 1075
DraIII CACNNNGTG 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 1193
Ecl136II GAGCTC 1 cut(s) 950
Eco130I CCWWGG 3 cut(s) 138, 229, 477
Eco24I GRGCYC 1 cut(s) 952
Eco31I GGTCTC 1 cut(s) 637
Eco53kI GAGCTC 1 cut(s) 950
Eco57I CTGAAG 1 cut(s) 1121
Eco81I CCTNAGG 2 cut(s) 627, 846
Eco91I GGTNACC 1 cut(s) 1106
EcoICRI GAGCTC 1 cut(s) 950
EcoO65I GGTNACC 1 cut(s) 1106
EcoT14I CCWWGG 3 cut(s) 138, 229, 477
EcoT22I ATGCAT 1 cut(s) 864
EcoT38I GRGCYC 1 cut(s) 952
ErhI CCWWGG 3 cut(s) 138, 229, 477
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 6 cut(s) 397, 481, 515, 526, 820, 1200
FaqI GGGAC 2 cut(s) 351, 550
FatI CATG 6 cut(s) 393, 477, 511, 522, 816, 1196
Fnu4HI GCNGC 2 cut(s) 204, 792
FokI GGATG 1 cut(s) 746
FriOI GRGCYC 1 cut(s) 952
Fsp4HI GCNGC 2 cut(s) 204, 792
FspI TGCGCA 1 cut(s) 161
GlaI GCGC 2 cut(s) 20, 161
GluI GCNGC 2 cut(s) 204, 792
GsaI CCCAGC 2 cut(s) 691, 780
GsuI CTGGAG 2 cut(s) 556, 1167
HaeIII GGCC 7 cut(s) 8, 632, 692, 844, 904, 1146, 1195
HapII CCGG 1 cut(s) 755
HhaI GCGC 2 cut(s) 21, 162
Hin1II CATG 6 cut(s) 397, 481, 515, 526, 820, 1200
Hin6I GCGC 2 cut(s) 19, 160
HinP1I GCGC 2 cut(s) 19, 160
HinfI GANTC 5 cut(s) 302, 377, 469, 576, 682
HpaII CCGG 1 cut(s) 755
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 5 cut(s) 39, 88, 298, 675, 1054
Hpy188III TCNNGA 5 cut(s) 13, 523, 573, 998, 1184
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 910, 1096
HpyCH4III ACNGT 2 cut(s) 1157, 1165
HpyCH4IV ACGT 2 cut(s) 408, 912
HpyCH4V TGCA 7 cut(s) 4, 206, 247, 599, 701, 862, 935
HpyF10VI GCNNNNNNNGC 9 cut(s) 25, 157, 395, 605, 698, 788, 947, 1096, 1143
HpyF3I CTNAG 4 cut(s) 297, 627, 666, 846
HpySE526I ACGT 2 cut(s) 408, 912
Hsp92II CATG 6 cut(s) 397, 481, 515, 526, 820, 1200
HspAI GCGC 2 cut(s) 19, 160
KpnI GGTACC 1 cut(s) 813
Kzo9I GATC 9 cut(s) 88, 106, 122, 179, 215, 670, 737, 1015, 1075
LmnI GCTCC 3 cut(s) 101, 947, 955
Lsp1109I GCAGC 2 cut(s) 190, 803
LweI GCATC 3 cut(s) 563, 871, 1177
MaeII ACGT 2 cut(s) 408, 912
MaeIII GTNAC 2 cut(s) 311, 1106
MalI GATC 9 cut(s) 90, 108, 124, 181, 217, 672, 739, 1017, 1077
MboI GATC 9 cut(s) 88, 106, 122, 179, 215, 670, 737, 1015, 1075
MboII GAAGA 6 cut(s) 42, 189, 386, 549, 710, 997
MfeI CAATTG 2 cut(s) 866, 930
MflI RGATCY 3 cut(s) 122, 215, 737
MhlI GDGCHC 4 cut(s) 30, 153, 952, 1092
MlsI TGGCCA 1 cut(s) 1195
MluCI AATT 9 cut(s) 72, 381, 620, 746, 825, 866, 930, 1130, 1150
MluNI TGGCCA 1 cut(s) 1195
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 775
Mox20I TGGCCA 1 cut(s) 1195
Mph1103I ATGCAT 1 cut(s) 864
MscI TGGCCA 1 cut(s) 1195
MseI TTAA 4 cut(s) 323, 384, 581, 614
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 1195
MspCI CTTAAG 1 cut(s) 580
MspI CCGG 1 cut(s) 755
MunI CAATTG 2 cut(s) 866, 930
MvnI CGCG 2 cut(s) 21, 367
MwoI GCNNNNNNNGC 9 cut(s) 25, 157, 395, 605, 698, 788, 947, 1096, 1143
NcoI CCATGG 1 cut(s) 477
NdeII GATC 9 cut(s) 88, 106, 122, 179, 215, 670, 737, 1015, 1075
NlaIII CATG 6 cut(s) 397, 481, 515, 526, 820, 1200
NlaIV GGNNCC 5 cut(s) 29, 152, 227, 811, 921
NmuCI GTSAC 1 cut(s) 311
NsbI TGCGCA 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 864
PagI TCATGA 1 cut(s) 522
PfeI GAWTC 4 cut(s) 377, 469, 576, 682
PinAI ACCGGT 1 cut(s) 754
PkrI GCNGC 2 cut(s) 205, 793
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Ppu21I YACGTR 1 cut(s) 913
Psp124BI GAGCTC 1 cut(s) 952
PspEI GGTNACC 1 cut(s) 1106
PspFI CCCAGC 2 cut(s) 687, 776
PspN4I GGNNCC 5 cut(s) 29, 152, 227, 811, 921
PspPI GGNCC 3 cut(s) 690, 842, 1145
PstI CTGCAG 2 cut(s) 208, 601
PstNI CAGNNNCTG 1 cut(s) 37
PsuI RGATCY 3 cut(s) 122, 215, 737
RsaI GTAC 4 cut(s) 348, 586, 664, 811
RsaNI GTAC 4 cut(s) 347, 585, 663, 810
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 952
SaqAI TTAA 4 cut(s) 323, 384, 581, 614
SatI GCNGC 2 cut(s) 204, 792
Sau3AI GATC 9 cut(s) 88, 106, 122, 179, 215, 670, 737, 1015, 1075
Sau96I GGNCC 3 cut(s) 690, 842, 1145
ScaI AGTACT 1 cut(s) 586
SchI GAGTC 1 cut(s) 296
SduI GDGCHC 4 cut(s) 30, 153, 952, 1092
SfaNI GCATC 3 cut(s) 563, 871, 1177
SfcI CTRYAG 4 cut(s) 204, 597, 1035, 1161
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 3 cut(s) 65, 317, 580
SmoI CTYRAG 3 cut(s) 65, 317, 580
Sse9I AATT 9 cut(s) 72, 381, 620, 746, 825, 866, 930, 1130, 1150
SsiI CCGC 2 cut(s) 365, 722
SspI AATATT 1 cut(s) 963
SstI GAGCTC 1 cut(s) 952
StyI CCWWGG 3 cut(s) 138, 229, 477
TaaI ACNGT 2 cut(s) 1157, 1165
TaiI ACGT 2 cut(s) 411, 915
TaqI TCGA 1 cut(s) 14
TasI AATT 9 cut(s) 72, 381, 620, 746, 825, 866, 930, 1130, 1150
TatI WGTACW 1 cut(s) 584
TfiI GAWTC 4 cut(s) 377, 469, 576, 682
Tru1I TTAA 4 cut(s) 323, 384, 581, 614
Tru9I TTAA 4 cut(s) 323, 384, 581, 614
TscAI CASTG 2 cut(s) 1078, 1174
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 2 cut(s) 203, 791
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 3 cut(s) 368, 387, 846
TspGWI ACGGA 3 cut(s) 135, 278, 884
TspRI CASTG 2 cut(s) 1078, 1174
Vha464I CTTAAG 1 cut(s) 580
XapI RAATTY 2 cut(s) 746, 825
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
ZrmI AGTACT 1 cut(s) 586
Zsp2I ATGCAT 1 cut(s) 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.