Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009359

Physical Location & Seq

Genomic Coordinates Forward (+)

48685017 .. 48690607

Gene Structure 5591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG288400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGAAGCCAGGTATTAGTTCCGTTCCGTGGTTCTGAAGATTCCCATCGTCATCTCAAGTTGATGGGAGATTTGGGACAGATAGTACCAATGAAATACAATCCAAGAGATGAAAACTCAATTAAGGCAGTAATGGCGAAAGCTAATGTGGTTATCAATCTTATTGGTAGAGAGTATGAGACAAGAAACTTTAGCTTTGAGGAAGTGAATCATTCCATGGCTGAACAACTCGCAATGATTTCCAAAGAACATGGGGGTATCATGAGATTTATTCAAGTTTCTTGCTTAGGGGCATCTCCCTCATCACCATCCAAATATCTAAAGGCTAAAGCTGCTGCAGAGGGTGCTGTTTTAAGTGAACTACCAGAGGCCACAATTATGAGACCTGCTGTGATGATTGGTACAGAGGATCGAATTTTGAATCGGTGGGCCCATGTTTCGAAAAAATATGGCTTTCTTCCACTTGTTGGGGATGGGTCTACCAAAATCCAACCTGTATATGTTGCTGATGTTGCTGGTGCAATTGTTTCTGCCCTGCAAGATGATGGCACAAGTATGGGAAAAGTTTATGAACTTGGTGGGCCTGAGGTCTATACAGTGCACCAATTGGCAGAAGTTATGTTTGACATGATCCGAGAATGGCCACACTACGTGAAGATTCCTCTCCCAATCGCTAAGGCAATTGCAATGCCACGAGAAATACTGCTTAAAAAAGTTCCATTCCCATTGCCAAATCCTGAAATTTTCAACCTAGATCAAATCCTTGCCCAAGCTTCAGATACAGTTGTCTCAGGAAATGCCTTGACTTTCAATGATCTTGGAATTCTTCCCCATAAGATCAAGGGCTACCCTATTGAGTTTCTTATCCAATATCGTAAGGGAGGCCCAAACTTTGGTTCTACAGTCAGTGAAAAAGTATCTCCAGATGCTTGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009628 GO:0009651 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0070469 GO:0071704 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901004 GO:1901006 GO:1901576 GO:1901661 GO:1901663 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Epimerase NAD_binding_10 NmrA

Protein Analysis

312

Amino Acids

34.3

Weight (kDa)

6.72

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20360
fragaria_vesca	FvH4_2g20370 FvH4_2g20370 FvH4_2g20370
malus_domestica	MD05G1187700.v1.1 MD10G1175400.v1.1
prunus_persica	Prupe.8G214700_v2.0.a1 Prupe.8G214700_v2.0.a1 Prupe.8G214700_v2.0.a1
pyrus_communis	pycom05g17250 pycom10g15110 pycom10g15120
rosa_chinensis	RchiOBHm_Chr6g0286481
rosa_laevigata	RLG00000012568
rosa_multiflora	Rmu_sc0004816.1_g000013 Rmu_sc0005089.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182300
rosa_rugosa	Rorug06G0180100
rosa_samantha	Rh6AG292300 Rh6CG296600 Rh6DG288400
rosa_wichuraiana	Rw6G025210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AccB7I	CCANNNNNTGG	2 cut(s)	467, 893
AccI	GTMKAC	1 cut(s)	479
AclWI	GGATC	2 cut(s)	417, 625
AcoI	YGGCCR	2 cut(s)	641, 932
AcsI	RAATTY	3 cut(s)	414, 741, 822
AcuI	CTGAAG	2 cut(s)	57, 759
AdeI	CACNNNGTG	1 cut(s)	652
AfaI	GTAC	2 cut(s)	87, 403
AfiI	CCNNNNNNNGG	3 cut(s)	29, 467, 893
AgsI	TTSAA	4 cut(s)	275, 421, 748, 811
AjnI	CCWGG	1 cut(s)	9
AjuI	GAANNNNNNNTTGG	2 cut(s)	880, 912
AluBI	AGCT	4 cut(s)	143, 195, 332, 773
AluI	AGCT	4 cut(s)	143, 195, 332, 773
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	3 cut(s)	173, 376, 793
Alw44I	GTGCAC	1 cut(s)	599
AlwI	GGATC	2 cut(s)	417, 625
AoxI	GGCC	6 cut(s)	369, 429, 581, 641, 883, 932
ApaI	GGGCCC	1 cut(s)	433
ApaLI	GTGCAC	1 cut(s)	599
ApeKI	GCWGC	2 cut(s)	332, 335
ApoI	RAATTY	3 cut(s)	414, 741, 822
AspS9I	GGNCC	4 cut(s)	429, 430, 581, 884
AsuHPI	GGTGA	1 cut(s)	297
AsuII	TTCGAA	1 cut(s)	440
AxyI	CCTNAGG	1 cut(s)	585
BaeGI	GKGCMC	2 cut(s)	433, 603
BaeI	ACNNNNGTAYC	2 cut(s)	771, 804
BalI	TGGCCA	2 cut(s)	643, 934
BanII	GRGCYC	1 cut(s)	433
BauI	CACGAG	1 cut(s)	693
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	319, 322
BccI	CCATC	5 cut(s)	54, 58, 316, 467, 539
BciT130I	CCWGG	1 cut(s)	11
BcoDI	GTCTC	3 cut(s)	173, 376, 793
BfaI	CTAG	1 cut(s)	752
BfmI	CTRYAG	2 cut(s)	336, 900
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	2 cut(s)	333, 336
BlsI	GCNGC	2 cut(s)	334, 337
Bme1390I	CCNGG	1 cut(s)	11
BmgT120I	GGNCC	4 cut(s)	429, 430, 581, 884
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	2 cut(s)	302, 916
BpmI	CTGGAG	1 cut(s)	906
Bpu10I	CCTNAGC	2 cut(s)	286, 675
Bpu14I	TTCGAA	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	41
BsaAI	YACGTR	1 cut(s)	652
BsaBI	GATNNNNATC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	2 cut(s)	28, 216
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 467, 893
Bse21I	CCTNAGG	1 cut(s)	585
Bse3DI	GCAATG	3 cut(s)	240, 693, 725
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	28, 216
BseGI	GGATG	2 cut(s)	308, 478
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	3 cut(s)	29, 467, 893
BseMI	GCAATG	3 cut(s)	240, 693, 725
BseMII	CTCAG	2 cut(s)	576, 804
BseSI	GKGCMC	2 cut(s)	433, 603
BseXI	GCAGC	2 cut(s)	319, 322
BshFI	GGCC	6 cut(s)	371, 431, 583, 643, 885, 934
BsiHKAI	GWGCWC	1 cut(s)	603
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	3 cut(s)	29, 467, 893
BsmAI	GTCTC	3 cut(s)	173, 376, 793
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	6 cut(s)	371, 431, 583, 643, 885, 934
Bso31I	GGTCTC	1 cut(s)	376
Bsp119I	TTCGAA	1 cut(s)	440
Bsp120I	GGGCCC	1 cut(s)	429
Bsp1286I	GDGCHC	2 cut(s)	433, 603
Bsp143I	GATC	5 cut(s)	409, 630, 754, 814, 837
Bsp19I	CCATGG	1 cut(s)	216
BspANI	GGCC	6 cut(s)	371, 431, 583, 643, 885, 934
BspCNI	CTCAG	2 cut(s)	577, 803
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	431
BspMAI	CTGCAG	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	2 cut(s)	417, 625
BspT104I	TTCGAA	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	376
BsrDI	GCAATG	3 cut(s)	240, 693, 725
BssECI	CCNNGG	2 cut(s)	28, 216
BssMI	GATC	5 cut(s)	409, 630, 754, 814, 837
BssSI	CACGAG	1 cut(s)	693
BssT1I	CCWWGG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	693
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	3 cut(s)	598, 784, 904
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	652
BstBI	TTCGAA	1 cut(s)	440
BstDEI	CTNAG	4 cut(s)	286, 585, 675, 790
BstDSI	CCRYGG	2 cut(s)	28, 216
BstF5I	GGATG	2 cut(s)	308, 478
BstKTI	GATC	5 cut(s)	412, 633, 757, 817, 840
BstMAI	GTCTC	3 cut(s)	173, 376, 793
BstMBI	GATC	5 cut(s)	409, 630, 754, 814, 837
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 332, 344, 512
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstSFI	CTRYAG	2 cut(s)	336, 900
BstSLI	GKGCMC	2 cut(s)	433, 603
BstV1I	GCAGC	2 cut(s)	319, 322
BstXI	CCANNNNNNTGG	1 cut(s)	930
Bsu36I	CCTNAGG	1 cut(s)	585
BsuRI	GGCC	6 cut(s)	371, 431, 583, 643, 885, 934
BtgI	CCRYGG	2 cut(s)	28, 216
BtsCI	GGATG	2 cut(s)	308, 478
BtsIMutI	CAGTG	2 cut(s)	603, 913
BveI	ACCTGC	1 cut(s)	394
CciI	TCATGA	1 cut(s)	261
Cfr13I	GGNCC	4 cut(s)	429, 430, 581, 884
Csp6I	GTAC	2 cut(s)	86, 402
CviAII	CATG	6 cut(s)	217, 251, 262, 434, 628, 936
CviQI	GTAC	2 cut(s)	86, 402
DdeI	CTNAG	4 cut(s)	286, 585, 675, 790
DpnI	GATC	5 cut(s)	411, 632, 756, 816, 839
DpnII	GATC	5 cut(s)	409, 630, 754, 814, 837
DraIII	CACNNNGTG	1 cut(s)	652
EaeI	YGGCCR	2 cut(s)	641, 932
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	376
Eco57I	CTGAAG	2 cut(s)	57, 759
Eco81I	CCTNAGG	1 cut(s)	585
EcoRI	GAATTC	1 cut(s)	822
EcoRII	CCWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	6 cut(s)	220, 254, 265, 437, 631, 939
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	6 cut(s)	216, 250, 261, 433, 627, 935
FblI	GTMKAC	1 cut(s)	479
Fnu4HI	GCNGC	2 cut(s)	333, 336
FokI	GGATG	2 cut(s)	295, 485
FriOI	GRGCYC	1 cut(s)	433
Fsp4HI	GCNGC	2 cut(s)	333, 336
FspBI	CTAG	1 cut(s)	752
GluI	GCNGC	2 cut(s)	333, 336
GsuI	CTGGAG	1 cut(s)	906
HaeIII	GGCC	6 cut(s)	371, 431, 583, 643, 885, 934
Hin1II	CATG	6 cut(s)	220, 254, 265, 437, 631, 939
HindIII	AAGCTT	1 cut(s)	771
HinfI	GANTC	4 cut(s)	41, 208, 421, 658
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	3 cut(s)	359, 480, 601
Hpy188I	TCNGA	3 cut(s)	37, 635, 778
Hpy188III	TCNNGA	4 cut(s)	262, 737, 792, 923
Hpy8I	GTNNAC	3 cut(s)	359, 480, 601
HpyCH4III	ACNGT	3 cut(s)	598, 784, 904
HpyCH4IV	ACGT	1 cut(s)	651
HpyCH4V	TGCA	5 cut(s)	338, 521, 538, 601, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 332, 344, 512
HpyF3I	CTNAG	4 cut(s)	286, 585, 675, 790
HpySE526I	ACGT	1 cut(s)	651
Hsp92II	CATG	6 cut(s)	220, 254, 265, 437, 631, 939
Kzo9I	GATC	5 cut(s)	409, 630, 754, 814, 837
LpnPI	CCDG	9 cut(s)	23, 378, 399, 501, 507, 548, 597, 750, 777
Lsp1109I	GCAGC	2 cut(s)	319, 322
LweI	GCATC	2 cut(s)	302, 916
MaeI	CTAG	1 cut(s)	752
MaeII	ACGT	1 cut(s)	651
MalI	GATC	5 cut(s)	411, 632, 756, 816, 839
MboI	GATC	5 cut(s)	409, 630, 754, 814, 837
MboII	GAAGA	4 cut(s)	50, 449, 667, 818
MfeI	CAATTG	3 cut(s)	522, 605, 681
MhlI	GDGCHC	2 cut(s)	433, 603
MlsI	TGGCCA	2 cut(s)	643, 934
MluCI	AATT	8 cut(s)	120, 375, 414, 522, 605, 681, 741, 822
MluNI	TGGCCA	2 cut(s)	643, 934
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	8 cut(s)	193, 310, 334, 361, 400, 580, 672, 875
Mox20I	TGGCCA	2 cut(s)	643, 934
MscI	TGGCCA	2 cut(s)	643, 934
MseI	TTAA	3 cut(s)	123, 353, 708
MslI	CAYNNNNRTG	2 cut(s)	377, 554
Msp20I	TGGCCA	2 cut(s)	643, 934
MspR9I	CCNGG	1 cut(s)	11
MunI	CAATTG	3 cut(s)	522, 605, 681
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	134, 332, 344, 512
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	5 cut(s)	409, 630, 754, 814, 837
NlaIII	CATG	6 cut(s)	220, 254, 265, 437, 631, 939
NlaIV	GGNNCC	1 cut(s)	431
NspV	TTCGAA	1 cut(s)	440
PagI	TCATGA	1 cut(s)	261
PfeI	GAWTC	4 cut(s)	41, 208, 421, 658
PflMI	CCANNNNNTGG	2 cut(s)	467, 893
PkrI	GCNGC	2 cut(s)	334, 337
Ppu21I	YACGTR	1 cut(s)	652
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	431
PspOMI	GGGCCC	1 cut(s)	429
PspPI	GGNCC	4 cut(s)	429, 430, 581, 884
PstI	CTGCAG	1 cut(s)	340
RsaI	GTAC	2 cut(s)	87, 403
RsaNI	GTAC	2 cut(s)	86, 402
RseI	CAYNNNNRTG	2 cut(s)	377, 554
SaqAI	TTAA	3 cut(s)	123, 353, 708
SatI	GCNGC	2 cut(s)	333, 336
Sau3AI	GATC	5 cut(s)	409, 630, 754, 814, 837
Sau96I	GGNCC	4 cut(s)	429, 430, 581, 884
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	2 cut(s)	433, 603
SfaNI	GCATC	2 cut(s)	302, 916
SfcI	CTRYAG	2 cut(s)	336, 900
SfuI	TTCGAA	1 cut(s)	440
SmiMI	CAYNNNNRTG	2 cut(s)	377, 554
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	8 cut(s)	120, 375, 414, 522, 605, 681, 741, 822
SspMI	CTAG	1 cut(s)	752
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	598, 784, 904
TaiI	ACGT	1 cut(s)	654
TaqI	TCGA	2 cut(s)	412, 440
TasI	AATT	8 cut(s)	120, 375, 414, 522, 605, 681, 741, 822
TfiI	GAWTC	4 cut(s)	41, 208, 421, 658
Tru1I	TTAA	3 cut(s)	123, 353, 708
Tru9I	TTAA	3 cut(s)	123, 353, 708
TscAI	CASTG	2 cut(s)	603, 913
TseI	GCWGC	2 cut(s)	332, 335
TspDTI	ATGAA	3 cut(s)	107, 126, 585
TspGWI	ACGGA	2 cut(s)	12, 17
TspRI	CASTG	2 cut(s)	603, 913
Van91I	CCANNNNNTGG	2 cut(s)	467, 893
VneI	GTGCAC	1 cut(s)	599
XapI	RAATTY	3 cut(s)	414, 741, 822
XmiI	GTMKAC	1 cut(s)	479
XspI	CTAG	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.