Mad3/BUB1 hoMad3/BUB1 homology region 1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G20635 |
| fragaria_vesca | FvH4_6g26520 FvH4_6g26520 FvH4_6g26520 FvH4_6g26520 FvH4_6g26520 FvH4_6g26520 FvH4_6g26520 |
| malus_domestica | MD17G1236100.v1.1 |
| prunus_persica | Prupe.3G139600_v2.0.a1 Prupe.3G189400_v2.0.a1 Prupe.3G189400_v2.0.a1 Prupe.3G189400_v2.0.a1 Prupe.3G189400_v2.0.a1 |
| pyrus_communis | pycom09g16270 pycom17g23920 |
| rosa_chinensis | RchiOBHm_Chr2g0127641 |
| rosa_laevigata | RLG00000018946 |
| rosa_multiflora | Rmu_sc0005528.1_g000003 Rmu_ssc0000200.1_g000006 |
| rosa_roxburghii | Rroxscaffold_2G00116620 |
| rosa_rugosa | Rorug02G0272200 |
| rosa_samantha | Rh2AG324200 Rh2BG333300 Rh2CG311700 Rh2DG351600 |
| rosa_wichuraiana | Rw2G026320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 144 |
| AatII | GACGTC | 1 cut(s) | 924 |
| Acc65I | GGTACC | 2 cut(s) | 159, 567 |
| AccB1I | GGYRCC | 2 cut(s) | 159, 567 |
| AccBSI | CCGCTC | 1 cut(s) | 37 |
| AccI | GTMKAC | 2 cut(s) | 880, 1317 |
| AccIII | TCCGGA | 1 cut(s) | 98 |
| AciI | CCGC | 2 cut(s) | 24, 35 |
| AclWI | GGATC | 6 cut(s) | 84, 808, 821, 1057, 1410, 1505 |
| AcoI | YGGCCR | 1 cut(s) | 685 |
| AcsI | RAATTY | 4 cut(s) | 64, 94, 331, 782 |
| AcvI | CACGTG | 1 cut(s) | 862 |
| AcyI | GRCGYC | 2 cut(s) | 21, 921 |
| AfaI | GTAC | 5 cut(s) | 161, 569, 665, 759, 1213 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 448, 598, 673, 1231 |
| AflIII | ACRYGT | 3 cut(s) | 789, 861, 1445 |
| AgsI | TTSAA | 6 cut(s) | 206, 245, 357, 446, 712, 1045 |
| AjnI | CCWGG | 2 cut(s) | 592, 915 |
| AluBI | AGCT | 7 cut(s) | 118, 365, 550, 1173, 1429, 1519, 1531 |
| AluI | AGCT | 7 cut(s) | 118, 365, 550, 1173, 1429, 1519, 1531 |
| Alw21I | GWGCWC | 1 cut(s) | 861 |
| Alw26I | GTCTC | 8 cut(s) | 12, 24, 242, 476, 1001, 1085, 1139, 1457 |
| Alw44I | GTGCAC | 1 cut(s) | 857 |
| AlwI | GGATC | 6 cut(s) | 84, 808, 821, 1057, 1410, 1505 |
| Aor13HI | TCCGGA | 1 cut(s) | 98 |
| AoxI | GGCC | 3 cut(s) | 468, 600, 685 |
| ApaLI | GTGCAC | 1 cut(s) | 857 |
| ApeKI | GCWGC | 2 cut(s) | 1306, 1429 |
| ApoI | RAATTY | 4 cut(s) | 64, 94, 331, 782 |
| AseI | ATTAAT | 1 cut(s) | 1362 |
| Asp718I | GGTACC | 2 cut(s) | 159, 567 |
| AspS9I | GGNCC | 1 cut(s) | 426 |
| AsuHPI | GGTGA | 2 cut(s) | 467, 1049 |
| AvaII | GGWCC | 1 cut(s) | 426 |
| AxyI | CCTNAGG | 1 cut(s) | 1216 |
| BaeGI | GKGCMC | 1 cut(s) | 861 |
| BalI | TGGCCA | 1 cut(s) | 687 |
| BamHI | GGATCC | 1 cut(s) | 813 |
| BanI | GGYRCC | 2 cut(s) | 159, 567 |
| BbrPI | CACGTG | 1 cut(s) | 862 |
| Bbv12I | GWGCWC | 1 cut(s) | 861 |
| BbvI | GCAGC | 2 cut(s) | 1293, 1416 |
| BccI | CCATC | 2 cut(s) | 64, 557 |
| BceAI | ACGGC | 1 cut(s) | 538 |
| BciT130I | CCWGG | 2 cut(s) | 594, 917 |
| BciVI | GTATCC | 1 cut(s) | 95 |
| BcoDI | GTCTC | 8 cut(s) | 12, 24, 242, 476, 1001, 1085, 1139, 1457 |
| BfaI | CTAG | 1 cut(s) | 1182 |
| BfmI | CTRYAG | 1 cut(s) | 874 |
| BfuI | GTATCC | 1 cut(s) | 95 |
| BglII | AGATCT | 1 cut(s) | 186 |
| BisI | GCNGC | 3 cut(s) | 24, 1307, 1430 |
| BlsI | GCNGC | 3 cut(s) | 25, 1308, 1431 |
| Bme1390I | CCNGG | 2 cut(s) | 594, 917 |
| Bme18I | GGWCC | 1 cut(s) | 426 |
| BmgT120I | GGNCC | 1 cut(s) | 426 |
| BmiI | GGNNCC | 3 cut(s) | 161, 569, 815 |
| BmrFI | CCNGG | 2 cut(s) | 594, 917 |
| BmrI | ACTGGG | 1 cut(s) | 1159 |
| BmsI | GCATC | 4 cut(s) | 443, 451, 1293, 1566 |
| BmuI | ACTGGG | 1 cut(s) | 1159 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 21, 53, 380, 412 |
| BpmI | CTGGAG | 3 cut(s) | 899, 1025, 1059 |
| Bpu10I | CCTNAGC | 2 cut(s) | 465, 1515 |
| BpuEI | CTTGAG | 4 cut(s) | 167, 323, 687, 1189 |
| BsaAI | YACGTR | 1 cut(s) | 862 |
| BsaHI | GRCGYC | 2 cut(s) | 21, 921 |
| BsaI | GGTCTC | 2 cut(s) | 24, 1139 |
| BsaJI | CCNNGG | 7 cut(s) | 44, 500, 592, 688, 776, 954, 1253 |
| BsaWI | WCCGGW | 1 cut(s) | 98 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 448, 598, 673, 1231 |
| Bse1I | ACTGG | 3 cut(s) | 352, 1154, 1397 |
| Bse21I | CCTNAGG | 1 cut(s) | 1216 |
| BseAI | TCCGGA | 1 cut(s) | 98 |
| BseBI | CCWGG | 2 cut(s) | 594, 917 |
| BseDI | CCNNGG | 7 cut(s) | 44, 500, 592, 688, 776, 954, 1253 |
| BseGI | GGATG | 1 cut(s) | 509 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 448, 598, 673, 1231 |
| BseMII | CTCAG | 8 cut(s) | 187, 243, 479, 863, 1080, 1230, 1460, 1469 |
| BseNI | ACTGG | 3 cut(s) | 352, 1154, 1397 |
| BseSI | GKGCMC | 1 cut(s) | 861 |
| BseXI | GCAGC | 2 cut(s) | 1293, 1416 |
| BsgI | GTGCAG | 1 cut(s) | 1292 |
| BshFI | GGCC | 3 cut(s) | 470, 602, 687 |
| BshNI | GGYRCC | 2 cut(s) | 159, 567 |
| BsiHKAI | GWGCWC | 1 cut(s) | 861 |
| BsiSI | CCGG | 2 cut(s) | 27, 99 |
| BslFI | GGGAC | 1 cut(s) | 922 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 448, 598, 673, 1231 |
| BsmAI | GTCTC | 8 cut(s) | 12, 24, 242, 476, 1001, 1085, 1139, 1457 |
| BsmBI | CGTCTC | 2 cut(s) | 12, 476 |
| BsmFI | GGGAC | 1 cut(s) | 922 |
| BsmI | GAATGC | 2 cut(s) | 268, 716 |
| BsnI | GGCC | 3 cut(s) | 470, 602, 687 |
| Bso31I | GGTCTC | 2 cut(s) | 24, 1139 |
| Bsp1286I | GDGCHC | 1 cut(s) | 861 |
| Bsp13I | TCCGGA | 1 cut(s) | 98 |
| Bsp19I | CCATGG | 2 cut(s) | 500, 954 |
| BspACI | CCGC | 2 cut(s) | 24, 35 |
| BspANI | GGCC | 3 cut(s) | 470, 602, 687 |
| BspCNI | CTCAG | 8 cut(s) | 186, 244, 478, 862, 1081, 1229, 1461, 1470 |
| BspEI | TCCGGA | 1 cut(s) | 98 |
| BspHI | TCATGA | 2 cut(s) | 1102, 1521 |
| BspLI | GGNNCC | 3 cut(s) | 161, 569, 815 |
| BspPI | GGATC | 6 cut(s) | 84, 808, 821, 1057, 1410, 1505 |
| BspQI | GCTCTTC | 2 cut(s) | 44, 319 |
| BspT107I | GGYRCC | 2 cut(s) | 159, 567 |
| BspTNI | GGTCTC | 2 cut(s) | 24, 1139 |
| BsrBI | CCGCTC | 1 cut(s) | 37 |
| BsrI | ACTGG | 3 cut(s) | 352, 1154, 1397 |
| BssECI | CCNNGG | 7 cut(s) | 44, 500, 592, 688, 776, 954, 1253 |
| BssNAI | GTATAC | 1 cut(s) | 881 |
| BssNI | GRCGYC | 2 cut(s) | 21, 921 |
| BssT1I | CCWWGG | 5 cut(s) | 500, 688, 776, 954, 1253 |
| Bst1107I | GTATAC | 1 cut(s) | 881 |
| Bst2UI | CCWGG | 2 cut(s) | 594, 917 |
| Bst4CI | ACNGT | 5 cut(s) | 517, 878, 1019, 1352, 1419 |
| Bst6I | CTCTTC | 4 cut(s) | 44, 240, 319, 1488 |
| BstACI | GRCGYC | 2 cut(s) | 21, 921 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 274 |
| BstBAI | YACGTR | 1 cut(s) | 862 |
| BstC8I | GCNNGC | 1 cut(s) | 685 |
| BstDSI | CCRYGG | 3 cut(s) | 44, 500, 954 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 446 |
| BstF5I | GGATG | 1 cut(s) | 509 |
| BstMAI | GTCTC | 8 cut(s) | 12, 24, 242, 476, 1001, 1085, 1139, 1457 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 274, 684, 1000, 1227 |
| BstNI | CCWGG | 2 cut(s) | 594, 917 |
| BstNSI | RCATGY | 3 cut(s) | 793, 976, 1003 |
| BstSCI | CCNGG | 2 cut(s) | 592, 915 |
| BstSFI | CTRYAG | 1 cut(s) | 874 |
| BstSLI | GKGCMC | 1 cut(s) | 861 |
| BstV1I | GCAGC | 2 cut(s) | 1293, 1416 |
| BstX2I | RGATCY | 4 cut(s) | 76, 186, 813, 1402 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 478 |
| BstYI | RGATCY | 4 cut(s) | 76, 186, 813, 1402 |
| BstZ17I | GTATAC | 1 cut(s) | 881 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1216 |
| BsuI | GTATCC | 1 cut(s) | 95 |
| BsuRI | GGCC | 3 cut(s) | 470, 602, 687 |
| BtgI | CCRYGG | 3 cut(s) | 44, 500, 954 |
| BtsCI | GGATG | 1 cut(s) | 509 |
| BtsIMutI | CAGTG | 4 cut(s) | 471, 513, 1024, 1466 |
| Cac8I | GCNNGC | 1 cut(s) | 685 |
| CciI | TCATGA | 2 cut(s) | 1102, 1521 |
| Cfr13I | GGNCC | 1 cut(s) | 426 |
| CseI | GACGC | 1 cut(s) | 29 |
| Csp6I | GTAC | 5 cut(s) | 160, 568, 664, 758, 1212 |
| CviQI | GTAC | 5 cut(s) | 160, 568, 664, 758, 1212 |
| DraI | TTTAAA | 1 cut(s) | 1384 |
| EaeI | YGGCCR | 1 cut(s) | 685 |
| Eam1104I | CTCTTC | 4 cut(s) | 44, 240, 319, 1488 |
| EarI | CTCTTC | 4 cut(s) | 44, 240, 319, 1488 |
| Eco130I | CCWWGG | 5 cut(s) | 500, 688, 776, 954, 1253 |
| Eco31I | GGTCTC | 2 cut(s) | 24, 1139 |
| Eco47I | GGWCC | 1 cut(s) | 426 |
| Eco72I | CACGTG | 1 cut(s) | 862 |
| Eco81I | CCTNAGG | 1 cut(s) | 1216 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 446 |
| EcoRI | GAATTC | 1 cut(s) | 782 |
| EcoRII | CCWGG | 2 cut(s) | 592, 915 |
| EcoT14I | CCWWGG | 5 cut(s) | 500, 688, 776, 954, 1253 |
| ErhI | CCWWGG | 5 cut(s) | 500, 688, 776, 954, 1253 |
| Esp3I | CGTCTC | 2 cut(s) | 12, 476 |
| FaqI | GGGAC | 1 cut(s) | 922 |
| FauI | CCCGC | 1 cut(s) | 42 |
| FblI | GTMKAC | 2 cut(s) | 880, 1317 |
| Fnu4HI | GCNGC | 3 cut(s) | 24, 1307, 1430 |
| FokI | GGATG | 1 cut(s) | 496 |
| Fsp4HI | GCNGC | 3 cut(s) | 24, 1307, 1430 |
| FspBI | CTAG | 1 cut(s) | 1182 |
| GluI | GCNGC | 3 cut(s) | 24, 1307, 1430 |
| GsuI | CTGGAG | 3 cut(s) | 899, 1025, 1059 |
| HaeIII | GGCC | 3 cut(s) | 470, 602, 687 |
| HapII | CCGG | 2 cut(s) | 27, 99 |
| HgaI | GACGC | 1 cut(s) | 29 |
| Hin1I | GRCGYC | 2 cut(s) | 21, 921 |
| HincII | GTYRAC | 1 cut(s) | 1147 |
| HindII | GTYRAC | 1 cut(s) | 1147 |
| HindIII | AAGCTT | 2 cut(s) | 116, 1529 |
| HinfI | GANTC | 6 cut(s) | 152, 177, 414, 496, 1026, 1474 |
| HpaII | CCGG | 2 cut(s) | 27, 99 |
| HphI | GGTGA | 2 cut(s) | 467, 1049 |
| Hpy166II | GTNNAC | 9 cut(s) | 520, 859, 881, 1147, 1197, 1270, 1297, 1318, 1422 |
| Hpy188I | TCNGA | 7 cut(s) | 176, 345, 852, 871, 1067, 1479, 1510 |
| Hpy8I | GTNNAC | 9 cut(s) | 520, 859, 881, 1147, 1197, 1270, 1297, 1318, 1422 |
| HpyAV | CCTTC | 5 cut(s) | 200, 667, 1123, 1234, 1390 |
| HpyCH4III | ACNGT | 5 cut(s) | 517, 878, 1019, 1352, 1419 |
| HpyCH4IV | ACGT | 4 cut(s) | 861, 921, 1314, 1445 |
| HpyCH4V | TGCA | 6 cut(s) | 619, 810, 859, 972, 1015, 1309 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 274, 684, 1000, 1227 |
| HpySE526I | ACGT | 4 cut(s) | 861, 921, 1314, 1445 |
| Hsp92I | GRCGYC | 2 cut(s) | 21, 921 |
| Kpn2I | TCCGGA | 1 cut(s) | 98 |
| KpnI | GGTACC | 2 cut(s) | 163, 571 |
| LguI | GCTCTTC | 2 cut(s) | 44, 319 |
| LmnI | GCTCC | 1 cut(s) | 1122 |
| Lsp1109I | GCAGC | 2 cut(s) | 1293, 1416 |
| LweI | GCATC | 4 cut(s) | 443, 451, 1293, 1566 |
| MaeI | CTAG | 1 cut(s) | 1182 |
| MaeII | ACGT | 4 cut(s) | 861, 921, 1314, 1445 |
| MaeIII | GTNAC | 2 cut(s) | 11, 1539 |
| MbiI | CCGCTC | 1 cut(s) | 37 |
| MflI | RGATCY | 4 cut(s) | 76, 186, 813, 1402 |
| MhlI | GDGCHC | 1 cut(s) | 861 |
| MlsI | TGGCCA | 1 cut(s) | 687 |
| MluCI | AATT | 7 cut(s) | 64, 94, 240, 331, 528, 622, 782 |
| MluNI | TGGCCA | 1 cut(s) | 687 |
| MmeI | TCCRAC | 2 cut(s) | 925, 1003 |
| Mox20I | TGGCCA | 1 cut(s) | 687 |
| MroI | TCCGGA | 1 cut(s) | 98 |
| MscI | TGGCCA | 1 cut(s) | 687 |
| MseI | TTAA | 6 cut(s) | 60, 383, 527, 1362, 1383, 1533 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1364 |
| Msp20I | TGGCCA | 1 cut(s) | 687 |
| MspI | CCGG | 2 cut(s) | 27, 99 |
| MspR9I | CCNGG | 2 cut(s) | 594, 917 |
| Mva1269I | GAATGC | 2 cut(s) | 268, 716 |
| MvaI | CCWGG | 2 cut(s) | 594, 917 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 274, 684, 1000, 1227 |
| NcoI | CCATGG | 2 cut(s) | 500, 954 |
| NlaIV | GGNNCC | 3 cut(s) | 161, 569, 815 |
| NmeAIII | GCCGAG | 1 cut(s) | 1395 |
| NspI | RCATGY | 3 cut(s) | 793, 976, 1003 |
| PagI | TCATGA | 2 cut(s) | 1102, 1521 |
| PciI | ACATGT | 1 cut(s) | 789 |
| PciSI | GCTCTTC | 2 cut(s) | 44, 319 |
| PctI | GAATGC | 2 cut(s) | 268, 716 |
| PfeI | GAWTC | 6 cut(s) | 152, 177, 414, 496, 1026, 1474 |
| PfoI | TCCNGGA | 1 cut(s) | 915 |
| PkrI | GCNGC | 3 cut(s) | 25, 1308, 1431 |
| PmaCI | CACGTG | 1 cut(s) | 862 |
| PmlI | CACGTG | 1 cut(s) | 862 |
| Ppu21I | YACGTR | 1 cut(s) | 862 |
| PscI | ACATGT | 1 cut(s) | 789 |
| PshBI | ATTAAT | 1 cut(s) | 1362 |
| PsiI | TTATAA | 1 cut(s) | 144 |
| Psp6I | CCWGG | 2 cut(s) | 592, 915 |
| PspCI | CACGTG | 1 cut(s) | 862 |
| PspGI | CCWGG | 2 cut(s) | 592, 915 |
| PspN4I | GGNNCC | 3 cut(s) | 161, 569, 815 |
| PspPI | GGNCC | 1 cut(s) | 426 |
| PsuI | RGATCY | 4 cut(s) | 76, 186, 813, 1402 |
| RsaI | GTAC | 5 cut(s) | 161, 569, 665, 759, 1213 |
| RsaNI | GTAC | 5 cut(s) | 160, 568, 664, 758, 1212 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1364 |
| SapI | GCTCTTC | 2 cut(s) | 44, 319 |
| SaqAI | TTAA | 6 cut(s) | 60, 383, 527, 1362, 1383, 1533 |
| SatI | GCNGC | 3 cut(s) | 24, 1307, 1430 |
| Sau96I | GGNCC | 1 cut(s) | 426 |
| ScrFI | CCNGG | 2 cut(s) | 594, 917 |
| SduI | GDGCHC | 1 cut(s) | 861 |
| SfaNI | GCATC | 4 cut(s) | 443, 451, 1293, 1566 |
| SfcI | CTRYAG | 1 cut(s) | 874 |
| SinI | GGWCC | 1 cut(s) | 426 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1364 |
| SmlI | CTYRAG | 4 cut(s) | 182, 302, 702, 1168 |
| SmoI | CTYRAG | 4 cut(s) | 182, 302, 702, 1168 |
| Sse9I | AATT | 7 cut(s) | 64, 94, 240, 331, 528, 622, 782 |
| SsiI | CCGC | 2 cut(s) | 24, 35 |
| SspMI | CTAG | 1 cut(s) | 1182 |
| StyD4I | CCNGG | 2 cut(s) | 592, 915 |
| StyI | CCWWGG | 5 cut(s) | 500, 688, 776, 954, 1253 |
| TaaI | ACNGT | 5 cut(s) | 517, 878, 1019, 1352, 1419 |
| TaiI | ACGT | 4 cut(s) | 864, 924, 1317, 1448 |
| TaqI | TCGA | 3 cut(s) | 68, 111, 1329 |
| TasI | AATT | 7 cut(s) | 64, 94, 240, 331, 528, 622, 782 |
| TauI | GCSGC | 1 cut(s) | 26 |
| TfiI | GAWTC | 6 cut(s) | 152, 177, 414, 496, 1026, 1474 |
| Tru1I | TTAA | 6 cut(s) | 60, 383, 527, 1362, 1383, 1533 |
| Tru9I | TTAA | 6 cut(s) | 60, 383, 527, 1362, 1383, 1533 |
| TscAI | CASTG | 4 cut(s) | 478, 520, 1024, 1473 |
| TseI | GCWGC | 2 cut(s) | 1306, 1429 |
| TspDTI | ATGAA | 9 cut(s) | 297, 686, 709, 753, 1022, 1091, 1253, 1368, 1538 |
| TspGWI | ACGGA | 1 cut(s) | 1214 |
| TspRI | CASTG | 4 cut(s) | 478, 520, 1024, 1473 |
| VneI | GTGCAC | 1 cut(s) | 857 |
| VpaK11BI | GGWCC | 1 cut(s) | 426 |
| VspI | ATTAAT | 1 cut(s) | 1362 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 446 |
| XapI | RAATTY | 4 cut(s) | 64, 94, 331, 782 |
| XceI | RCATGY | 3 cut(s) | 793, 976, 1003 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 774 |
| XmiI | GTMKAC | 2 cut(s) | 880, 1317 |
| XspI | CTAG | 1 cut(s) | 1182 |
| ZraI | GACGTC | 1 cut(s) | 922 |