Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015448

Physical Location & Seq

Genomic Coordinates Forward (+)

9112798 .. 9113597

Gene Structure 800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCGGCGATGCAGTGGTGCGGCGCGATGACACGACGGATTATGATGACGCAGCGAACATCTGCAGCTCTGAATTGTTCGGCGAGGTATTCATCGTTATCTCCGGCGTGTGCAGCTCCGGCGGTATCGGAAATGGATTTGTGTGGGAGAGGAGATAAGAAGACGAAGAAAGGGAAAAGATTCAAAGGATCGTACGGGAATTCGAGAGGGAAGAAACAGAAGATGATTGAGAGAATCAAAGACAAGCTTGAGCTTCCCAGGTCTACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009657 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPS31

Protein Analysis

98

Amino Acids

10.96

Weight (kDa)

10.39

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPS31	PF17067	21 - 88	3.2e-09	Ribosomal protein S31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21290
fragaria_vesca	FvH4_2g10470
malus_domestica	MD05G1055600.v1.1 MD10G1062900.v1.1
prunus_persica	Prupe.8G083700_v2.0.a1
pyrus_communis	pycom05g04590 pycom10g04860
rosa_chinensis	RchiOBHm_Chr6g0267951
rosa_multiflora	Rmu_sc0000434.1_g000018
rosa_roxburghii	Rroxscaffold_7G00200300
rosa_rugosa	Rorug06G0035700
rosa_samantha	Rh6BG159800 Rh6CG157000 Rh6DG145500
rosa_wichuraiana	Rw0G019630 Rw6G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	263
AccII	CGCG	1 cut(s)	26
AciI	CCGC	3 cut(s)	5, 21, 122
AclWI	GGATC	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	199
AfaI	GTAC	1 cut(s)	194
AgsI	TTSAA	2 cut(s)	184, 286
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	5 cut(s)	68, 116, 247, 253, 289
AluI	AGCT	5 cut(s)	68, 116, 247, 253, 289
AlwI	GGATC	1 cut(s)	196
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	3 cut(s)	52, 65, 113
ApoI	RAATTY	1 cut(s)	199
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	3 cut(s)	64, 77, 125
BciT130I	CCWGG	1 cut(s)	259
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	5 cut(s)	6, 22, 53, 66, 114
BlsI	GCNGC	5 cut(s)	7, 23, 54, 67, 115
Bme1390I	CCNGG	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	257, 269
BseBI	CCWGG	1 cut(s)	259
BseDI	CCNNGG	2 cut(s)	257, 269
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	3 cut(s)	64, 77, 125
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	104, 119
BsiWI	CGTACG	1 cut(s)	192
BsnI	GGCC	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	188
BspACI	CCGC	3 cut(s)	5, 21, 122
BspANI	GGCC	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	26
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	257, 269
BssMI	GATC	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	282
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	188
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 119
BstNI	CCWGG	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	257
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	64, 77, 125
BstV2I	GAAGAC	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	274
BtgZI	GCGATG	2 cut(s)	23, 41
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	20
CfoI	GCGC	1 cut(s)	26
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	193
CviJI	RGCY	6 cut(s)	68, 116, 247, 253, 274, 289
CviKI_1	RGCY	6 cut(s)	68, 116, 247, 253, 274, 289
CviQI	GTAC	1 cut(s)	193
DpnI	GATC	1 cut(s)	190
DpnII	GATC	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaiI	YATR	1 cut(s)	44
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	5 cut(s)	6, 22, 53, 66, 114
Fsp4HI	GCNGC	5 cut(s)	6, 22, 53, 66, 114
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	5 cut(s)	6, 22, 53, 66, 114
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	2 cut(s)	104, 119
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	2 cut(s)	180, 234
HpaII	CCGG	2 cut(s)	104, 119
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	3 cut(s)	72, 130, 296
Hpy188III	TCNNGA	1 cut(s)	204
Hpy8I	GTNNAC	1 cut(s)	264
Hpy99I	CGWCG	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	13, 65, 113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 119
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	188
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	4 cut(s)	117, 132, 244, 271
Lsp1109I	GCAGC	3 cut(s)	64, 77, 125
MalI	GATC	1 cut(s)	190
MboI	GATC	1 cut(s)	188
MboII	GAAGA	5 cut(s)	172, 178, 223, 232, 269
MluCI	AATT	2 cut(s)	73, 199
MnlI	CCTC	4 cut(s)	78, 143, 200, 285
MroXI	GAANNNNTTC	1 cut(s)	179
MspI	CCGG	2 cut(s)	104, 119
MspR9I	CCNGG	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	259
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	113, 119
NdeII	GATC	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	180, 234
Pfl23II	CGTACG	1 cut(s)	192
PkrI	GCNGC	5 cut(s)	7, 23, 54, 67, 115
Psp6I	CCWGG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	257
PspLI	CGTACG	1 cut(s)	192
PstI	CTGCAG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SatI	GCNGC	5 cut(s)	6, 22, 53, 66, 114
Sau3AI	GATC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	259
SetI	ASST	7 cut(s)	70, 89, 118, 249, 255, 263, 291
SfcI	CTRYAG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	73, 199
SsiI	CCGC	3 cut(s)	5, 21, 122
StyD4I	CCNGG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	269
TaqI	TCGA	1 cut(s)	203
TasI	AATT	2 cut(s)	73, 199
TauI	GCSGC	2 cut(s)	8, 24
TfiI	GAWTC	2 cut(s)	180, 234
TscAI	CASTG	1 cut(s)	20
TseI	GCWGC	3 cut(s)	52, 65, 113
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	20
XapI	RAATTY	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	263
XmnI	GAANNNNTTC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.