Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015448

Physical Location & Seq

Genomic Coordinates Reverse (-)

9291229 .. 9291495

Gene Structure 267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCTCAGTGGTGCGCCGGCGTAGCAAGGCGAGTGTTGGTGAGGGAGCACCGTGCACTGTTCACACCCACGTCATCAGGTCAGAGCAGCGGAGTCGGGGCTCCGATGCTGTGCGGGCGAGGGGACAAGAAGACGAAGAAGGGGAAGCGATTTAAAGGGTCGTACGGAAACGCTAGGCCGAAGAAGGAGAAGATGATCGAGCGCATCAAGGACAAGGTTGAGGTTCCCAGGTCCACTCCTTGGCCTCTCCCTTTCAAGCTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009657 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPS31

Protein Analysis

89

Amino Acids

9.84

Weight (kDa)

10.86

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPS31	PF17067	28 - 80	1.7e-11	Ribosomal protein S31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21290
fragaria_vesca	FvH4_2g10470
malus_domestica	MD05G1055600.v1.1 MD10G1062900.v1.1
prunus_persica	Prupe.8G083700_v2.0.a1
pyrus_communis	pycom05g04590 pycom10g04860
rosa_chinensis	RchiOBHm_Chr6g0267951
rosa_multiflora	Rmu_sc0000434.1_g000018
rosa_roxburghii	Rroxscaffold_7G00200300
rosa_rugosa	Rorug06G0035700
rosa_samantha	Rh6BG159800 Rh6CG157000 Rh6DG145500
rosa_wichuraiana	Rw0G019630 Rw6G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	240
AciI	CCGC	2 cut(s)	90, 114
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	256
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw21I	GWGCWC	2 cut(s)	51, 58
Alw44I	GTGCAC	1 cut(s)	54
AoxI	GGCC	2 cut(s)	176, 242
ApaLI	GTGCAC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	87
AspLEI	GCGC	2 cut(s)	17, 204
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	137
Bbv12I	GWGCWC	2 cut(s)	51, 58
BbvI	GCAGC	1 cut(s)	99
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciT130I	CCWGG	1 cut(s)	229
BfaI	CTAG	1 cut(s)	174
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	231
BmgBI	CACGTC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	2 cut(s)	102, 225
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	96, 213
BpiI	GAAGAC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	227, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	2 cut(s)	227, 239
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	99
BshFI	GGCC	2 cut(s)	178, 244
BsiHKAI	GWGCWC	2 cut(s)	51, 58
BsiSI	CCGG	1 cut(s)	18
BsiWI	CGTACG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	178, 244
Bsp1286I	GDGCHC	3 cut(s)	51, 58, 103
Bsp143I	GATC	1 cut(s)	195
BspACI	CCGC	2 cut(s)	90, 114
BspANI	GGCC	2 cut(s)	178, 244
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	2 cut(s)	102, 225
BsrFI	RCCGGY	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	2 cut(s)	227, 239
BssMI	GATC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	53, 60
BstC8I	GCNNGC	2 cut(s)	19, 116
BstDEI	CTNAG	1 cut(s)	6
BstHHI	GCGC	2 cut(s)	17, 204
BstKTI	GATC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 115
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	178, 244
BtrI	CACGTC	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	14, 56
Cac8I	GCNNGC	2 cut(s)	19, 116
CfoI	GCGC	2 cut(s)	17, 204
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	163
CviJI	RGCY	5 cut(s)	5, 101, 178, 244, 259
CviKI_1	RGCY	5 cut(s)	5, 101, 178, 244, 259
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
DraI	TTTAAA	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	239
FaqI	GGGAC	1 cut(s)	137
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	2 cut(s)	16, 203
GluI	GCNGC	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	178, 244
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	2 cut(s)	17, 204
Hin6I	GCGC	2 cut(s)	15, 202
HinP1I	GCGC	2 cut(s)	15, 202
HinfI	GANTC	1 cut(s)	93
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	56, 63, 234
Hpy188I	TCNGA	2 cut(s)	84, 105
Hpy8I	GTNNAC	3 cut(s)	56, 63, 234
HpyAV	CCTTC	2 cut(s)	133, 178
HpyCH4III	ACNGT	2 cut(s)	53, 60
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 115
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	71
HspAI	GCGC	2 cut(s)	15, 202
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	46, 106
LpnPI	CCDG	4 cut(s)	31, 63, 214, 241
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	2 cut(s)	96, 213
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	71
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	4 cut(s)	142, 148, 193, 202
MhlI	GDGCHC	3 cut(s)	51, 58, 103
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	4 cut(s)	36, 113, 214, 255
MreI	CGCCGGCG	1 cut(s)	17
MroNI	GCCGGC	1 cut(s)	17
MseI	TTAA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	2 cut(s)	23, 115
NaeI	GCCGGC	1 cut(s)	19
NdeII	GATC	1 cut(s)	195
NgoMIV	GCCGGC	1 cut(s)	17
NlaIV	GGNNCC	2 cut(s)	102, 225
PdiI	GCCGGC	1 cut(s)	19
Pfl23II	CGTACG	1 cut(s)	162
PflMI	CCANNNNNTGG	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspLI	CGTACG	1 cut(s)	162
PspN4I	GGNNCC	2 cut(s)	102, 225
PspPI	GGNCC	1 cut(s)	231
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	3 cut(s)	51, 58, 103
SetI	ASST	6 cut(s)	74, 82, 219, 225, 233, 261
SfaNI	GCATC	2 cut(s)	96, 213
SgrAI	CRCCGGYG	1 cut(s)	17
SinI	GGWCC	1 cut(s)	231
SsiI	CCGC	2 cut(s)	90, 114
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	2 cut(s)	53, 60
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	2 cut(s)	14, 63
TseI	GCWGC	1 cut(s)	87
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	14, 63
Van91I	CCANNNNNTGG	1 cut(s)	240
VneI	GTGCAC	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	231
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.