Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0015448

Physical Location & Seq

Genomic Coordinates Forward (+)

8536062 .. 8536361

Gene Structure 300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1062900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCGATGATGGTGCAGTGGTGCGGCGCAGCGGCGAGGCGGGTGTTGATGGCGGAGCAGCGCGCCCTCTTCACAACCTCATCCTCCTGCGCGGCGGTAGCTGCAGCAATTGCAAAAGAGAATGTGCTCGGGGCGCCGATGCTGTGCGGGCGAGGAGACAAGAAGACGAAGAAAGGGAAGCGATTCAAAGGGTCGTTCGGAAACGCTCGGCCGAAGAAGGAGAAGATGATCGAGCGCATCAAGGACAAGGTTGAGGTGCCCAGGTCCACCCCTTGGCCTCTCCCTTTCAAGCTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009657 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPS31

Protein Analysis

100

Amino Acids

10.89

Weight (kDa)

10.5

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPS31	PF17067	27 - 91	5.7e-11	Ribosomal protein S31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21290
fragaria_vesca	FvH4_2g10470
malus_domestica	MD05G1055600.v1.1 MD10G1062900.v1.1
prunus_persica	Prupe.8G083700_v2.0.a1
pyrus_communis	pycom05g04590 pycom10g04860
rosa_chinensis	RchiOBHm_Chr6g0267951
rosa_multiflora	Rmu_sc0000434.1_g000018
rosa_roxburghii	Rroxscaffold_7G00200300
rosa_rugosa	Rorug06G0035700
rosa_samantha	Rh6BG159800 Rh6CG157000 Rh6DG145500
rosa_wichuraiana	Rw0G019630 Rw6G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	133, 256
AccB7I	CCANNNNNTGG	1 cut(s)	273
AccII	CGCG	2 cut(s)	63, 92
AciI	CCGC	7 cut(s)	24, 32, 40, 53, 92, 95, 147
AcoI	YGGCCR	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	187, 289
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	2 cut(s)	101, 292
AluI	AGCT	2 cut(s)	101, 292
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	1 cut(s)	150
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	209, 275
ApeKI	GCWGC	4 cut(s)	29, 58, 101, 104
Asp700I	GAANNNNTTC	1 cut(s)	182
AspLEI	GCGC	6 cut(s)	29, 63, 65, 92, 136, 237
AspS9I	GGNCC	1 cut(s)	264
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	261
BanI	GGYRCC	2 cut(s)	133, 256
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	41, 70, 88, 116
BccI	CCATC	2 cut(s)	4, 43
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	137
BisI	GCNGC	7 cut(s)	25, 30, 33, 59, 93, 102, 105
BlsI	GCNGC	7 cut(s)	26, 31, 34, 60, 94, 103, 106
Bme1390I	CCNGG	1 cut(s)	262
Bme18I	GGWCC	1 cut(s)	264
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	135, 258
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	2 cut(s)	129, 246
BpiI	GAAGAC	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	260, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	260, 272
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	273
BsePI	GCGCGC	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	168
BseSI	GKGCMC	1 cut(s)	261
BseX3I	CGGCCG	1 cut(s)	209
BseXI	GCAGC	4 cut(s)	41, 70, 88, 116
BsgI	GTGCAG	1 cut(s)	35
Bsh1236I	CGCG	2 cut(s)	63, 92
Bsh1285I	CGRYCG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	211, 277
BshNI	GGYRCC	2 cut(s)	133, 256
BsiEI	CGRYCG	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	211, 277
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	129, 261
Bsp143I	GATC	1 cut(s)	228
BspACI	CCGC	7 cut(s)	24, 32, 40, 53, 92, 95, 147
BspANI	GGCC	2 cut(s)	211, 277
BspFNI	CGCG	2 cut(s)	63, 92
BspLI	GGNNCC	2 cut(s)	135, 258
BspMAI	CTGCAG	1 cut(s)	106
BspT107I	GGYRCC	2 cut(s)	133, 256
BssECI	CCNNGG	2 cut(s)	260, 272
BssHII	GCGCGC	1 cut(s)	61
BssMI	GATC	1 cut(s)	228
BssNI	GRCGYC	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	134
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	63, 149
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	2 cut(s)	63, 92
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	6 cut(s)	29, 63, 65, 92, 136, 237
BstKTI	GATC	1 cut(s)	231
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	228
BstMCI	CGRYCG	1 cut(s)	212
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 101, 110, 133, 148
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	260
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	261
BstUI	CGCG	2 cut(s)	63, 92
BstV1I	GCAGC	4 cut(s)	41, 70, 88, 116
BstV2I	GAAGAC	1 cut(s)	170
BstZI	CGGCCG	1 cut(s)	209
BsuRI	GGCC	2 cut(s)	211, 277
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	80
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	63, 149
CfoI	GCGC	6 cut(s)	29, 63, 65, 92, 136, 237
Cfr13I	GGNCC	1 cut(s)	264
CviJI	RGCY	4 cut(s)	101, 211, 277, 292
CviKI_1	RGCY	4 cut(s)	101, 211, 277, 292
DinI	GGCGCC	1 cut(s)	135
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
EaeI	YGGCCR	1 cut(s)	209
EagI	CGGCCG	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	68
EclXI	CGGCCG	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	264
Eco52I	CGGCCG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	272
EgeI	GGCGCC	1 cut(s)	135
EheI	GGCGCC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	272
FauI	CCCGC	2 cut(s)	33, 140
Fnu4HI	GCNGC	7 cut(s)	25, 30, 33, 59, 93, 102, 105
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	7 cut(s)	25, 30, 33, 59, 93, 102, 105
GlaI	GCGC	6 cut(s)	28, 62, 64, 91, 135, 236
GluI	GCNGC	7 cut(s)	25, 30, 33, 59, 93, 102, 105
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	211, 277
HhaI	GCGC	6 cut(s)	29, 63, 65, 92, 136, 237
Hin1I	GRCGYC	1 cut(s)	134
Hin6I	GCGC	6 cut(s)	27, 61, 63, 90, 134, 235
HinP1I	GCGC	6 cut(s)	27, 61, 63, 90, 134, 235
HinfI	GANTC	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	2 cut(s)	200, 299
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	1 cut(s)	211
HpyCH4V	TGCA	3 cut(s)	16, 104, 113
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 101, 110, 133, 148
Hsp92I	GRCGYC	1 cut(s)	134
HspAI	GCGC	6 cut(s)	27, 61, 63, 90, 134, 235
KasI	GGCGCC	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	3 cut(s)	100, 247, 274
Lsp1109I	GCAGC	4 cut(s)	41, 70, 88, 116
LweI	GCATC	2 cut(s)	129, 246
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	5 cut(s)	61, 175, 181, 226, 235
MfeI	CAATTG	1 cut(s)	108
MhlI	GDGCHC	2 cut(s)	129, 261
MluCI	AATT	1 cut(s)	108
Mly113I	GGCGCC	1 cut(s)	134
MnlI	CCTC	7 cut(s)	30, 77, 88, 94, 146, 247, 288
MroXI	GAANNNNTTC	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	262
MunI	CAATTG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	2 cut(s)	63, 92
MwoI	GCNNNNNNNGC	5 cut(s)	98, 101, 110, 133, 148
NarI	GGCGCC	1 cut(s)	134
NdeII	GATC	1 cut(s)	228
NlaIV	GGNNCC	2 cut(s)	135, 258
NmeAIII	GCCGAG	1 cut(s)	187
PauI	GCGCGC	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	273
PkrI	GCNGC	7 cut(s)	26, 31, 34, 60, 94, 103, 106
PluTI	GGCGCC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	135, 258
PspPI	GGNCC	1 cut(s)	264
PstI	CTGCAG	1 cut(s)	106
PteI	GCGCGC	1 cut(s)	61
SatI	GCNGC	7 cut(s)	25, 30, 33, 59, 93, 102, 105
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	2 cut(s)	129, 261
SetI	ASST	6 cut(s)	80, 103, 252, 258, 266, 294
SfaNI	GCATC	2 cut(s)	129, 246
SfcI	CTRYAG	1 cut(s)	102
SfoI	GGCGCC	1 cut(s)	135
SinI	GGWCC	1 cut(s)	264
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	7 cut(s)	24, 32, 40, 53, 92, 95, 147
SspDI	GGCGCC	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	272
TaqI	TCGA	1 cut(s)	231
TasI	AATT	1 cut(s)	108
TauI	GCSGC	3 cut(s)	27, 35, 95
TfiI	GAWTC	1 cut(s)	183
TscAI	CASTG	1 cut(s)	23
TseI	GCWGC	4 cut(s)	29, 58, 101, 104
TspRI	CASTG	1 cut(s)	23
Van91I	CCANNNNNTGG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.