Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000434.1

Orthogroup ID

OG0015448

Physical Location & Seq

Genomic Coordinates Reverse (-)

109219 .. 112276

Gene Structure 3058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000434.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atggagaatgttgagaaccatcgcaagaagatggacgcggatctcgccagagaaactgcaaaatcagaaaggctcctccgcgagtttgagcagcgtatgacccttgaggggttgctccggagaggctttgcaatcgctgggattgattactcagagagattaaagtgcaaatcaggaagaggagaaatggcgatggtgcagtggtgcggcgcagcggcgagacgagtgttggtgagggagcaccgtgccctcttcacgacctcgtcatcgccgacgtcagcagctcaaagcagtggaatcggggctccgatgctgtgcgggcgaggggacaagaagacgaagaaggggaagcggttcaaaggttcgtacgggaacgctaggccgaagaaggagaagatgatcgagcgcatcaaggacaaggttgaggttcccaggtccactccttggcctctccctttcaagctcatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009657 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPS31

Protein Analysis

156

Amino Acids

17.64

Weight (kDa)

10.31

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21290
fragaria_vesca	FvH4_2g10470
malus_domestica	MD05G1055600.v1.1 MD10G1062900.v1.1
prunus_persica	Prupe.8G083700_v2.0.a1
pyrus_communis	pycom05g04590 pycom10g04860
rosa_chinensis	RchiOBHm_Chr6g0267951
rosa_multiflora	Rmu_sc0000434.1_g000018
rosa_roxburghii	Rroxscaffold_7G00200300
rosa_rugosa	Rorug06G0035700
rosa_samantha	Rh6BG159800 Rh6CG157000 Rh6DG145500
rosa_wichuraiana	Rw0G019630 Rw6G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	278
AccB7I	CCANNNNNTGG	1 cut(s)	444
AccII	CGCG	2 cut(s)	38, 81
AccIII	TCCGGA	1 cut(s)	117
AciI	CCGC	6 cut(s)	38, 79, 207, 215, 318, 352
AclWI	GGATC	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	275
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	2 cut(s)	108, 444
AgsI	TTSAA	2 cut(s)	358, 460
AjnI	CCWGG	1 cut(s)	431
AluBI	AGCT	2 cut(s)	284, 463
AluI	AGCT	2 cut(s)	284, 463
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	48
Aor13HI	TCCGGA	1 cut(s)	117
AoxI	GGCC	2 cut(s)	380, 446
ApeKI	GCWGC	3 cut(s)	91, 212, 281
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	2 cut(s)	212, 408
AspS9I	GGNCC	1 cut(s)	435
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	103, 224, 293
BccI	CCATC	3 cut(s)	25, 27, 187
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BciT130I	CCWGG	1 cut(s)	433
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	5 cut(s)	92, 208, 213, 216, 282
BlsI	GCNGC	5 cut(s)	93, 209, 214, 217, 283
Bme1390I	CCNGG	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	435
BmgT120I	GGNCC	1 cut(s)	435
BmiI	GGNNCC	3 cut(s)	74, 306, 429
BmrFI	CCNGG	1 cut(s)	433
BmsI	GCATC	2 cut(s)	300, 417
BpiI	GAAGAC	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	431, 443
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 444
BseAI	TCCGGA	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	2 cut(s)	431, 443
BseLI	CCNNNNNNNGG	2 cut(s)	108, 444
BseMII	CTCAG	1 cut(s)	165
BseRI	GAGGAG	2 cut(s)	65, 195
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	3 cut(s)	103, 224, 293
BseYI	CCCAGC	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	218
Bsh1236I	CGCG	2 cut(s)	38, 81
BshFI	GGCC	2 cut(s)	382, 448
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	118
BsiWI	CGTACG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	2 cut(s)	108, 444
BsmAI	GTCTC	1 cut(s)	214
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	2 cut(s)	382, 448
Bsp1286I	GDGCHC	3 cut(s)	243, 250, 307
Bsp13I	TCCGGA	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	40, 399
BspACI	CCGC	6 cut(s)	38, 79, 207, 215, 318, 352
BspANI	GGCC	2 cut(s)	382, 448
BspCNI	CTCAG	1 cut(s)	164
BspEI	TCCGGA	1 cut(s)	117
BspFNI	CGCG	2 cut(s)	38, 81
BspLI	GGNNCC	3 cut(s)	74, 306, 429
BspPI	GGATC	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	431, 443
BssMI	GATC	2 cut(s)	40, 399
BssNI	GRCGYC	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	443
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	2 cut(s)	172, 257
BstACI	GRCGYC	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	151
BstFNI	CGCG	2 cut(s)	38, 81
BstHHI	GCGC	2 cut(s)	212, 408
BstKTI	GATC	2 cut(s)	43, 402
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	2 cut(s)	40, 399
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 319
BstNI	CCWGG	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	431
BstSLI	GKGCMC	1 cut(s)	250
BstUI	CGCG	2 cut(s)	38, 81
BstV1I	GCAGC	3 cut(s)	103, 224, 293
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	382, 448
BtgZI	GCGATG	3 cut(s)	5, 206, 252
BtsI	GCAGTG	2 cut(s)	206, 298
BtsIMutI	CAGTG	2 cut(s)	206, 298
Cac8I	GCNNGC	1 cut(s)	320
CfoI	GCGC	2 cut(s)	212, 408
Cfr13I	GGNCC	1 cut(s)	435
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	367
CviJI	RGCY	7 cut(s)	73, 126, 284, 305, 382, 448, 463
CviKI_1	RGCY	7 cut(s)	73, 126, 284, 305, 382, 448, 463
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	2 cut(s)	42, 401
DpnII	GATC	2 cut(s)	40, 399
Eam1104I	CTCTTC	2 cut(s)	172, 257
EarI	CTCTTC	2 cut(s)	172, 257
Eco130I	CCWWGG	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	443
Esp3I	CGTCTC	1 cut(s)	214
FaiI	YATR	1 cut(s)	98
FaqI	GGGAC	1 cut(s)	341
FauI	CCCGC	1 cut(s)	311
Fnu4HI	GCNGC	5 cut(s)	92, 208, 213, 216, 282
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	5 cut(s)	92, 208, 213, 216, 282
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	2 cut(s)	211, 407
GluI	GCNGC	5 cut(s)	92, 208, 213, 216, 282
GsaI	CCCAGC	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	382, 448
HapII	CCGG	1 cut(s)	118
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	2 cut(s)	212, 408
Hin1I	GRCGYC	1 cut(s)	275
Hin6I	GCGC	2 cut(s)	210, 406
HinP1I	GCGC	2 cut(s)	210, 406
HinfI	GANTC	1 cut(s)	297
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	438
Hpy188I	TCNGA	3 cut(s)	67, 154, 309
Hpy188III	TCNNGA	3 cut(s)	118, 174, 256
Hpy8I	GTNNAC	1 cut(s)	438
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	2 cut(s)	337, 382
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	4 cut(s)	59, 131, 168, 199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 319
HpyF3I	CTNAG	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	275
Hsp92I	GRCGYC	1 cut(s)	275
HspAI	GCGC	2 cut(s)	210, 406
Kpn2I	TCCGGA	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	40, 399
LmnI	GCTCC	4 cut(s)	78, 120, 238, 310
LpnPI	CCDG	6 cut(s)	61, 123, 131, 159, 418, 445
Lsp1109I	GCAGC	3 cut(s)	103, 224, 293
LweI	GCATC	2 cut(s)	300, 417
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	275
MalI	GATC	2 cut(s)	42, 401
MboI	GATC	2 cut(s)	40, 399
MboII	GAAGA	7 cut(s)	40, 189, 244, 346, 352, 397, 406
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	3 cut(s)	243, 250, 307
MroI	TCCGGA	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	433
MvaI	CCWGG	1 cut(s)	433
MvnI	CGCG	2 cut(s)	38, 81
MwoI	GCNNNNNNNGC	2 cut(s)	44, 319
NdeII	GATC	2 cut(s)	40, 399
NlaIV	GGNNCC	3 cut(s)	74, 306, 429
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	297
Pfl23II	CGTACG	1 cut(s)	366
PflFI	GACNNNGTC	1 cut(s)	262
PflMI	CCANNNNNTGG	1 cut(s)	444
PkrI	GCNGC	5 cut(s)	93, 209, 214, 217, 283
Psp6I	CCWGG	1 cut(s)	431
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	431
PspLI	CGTACG	1 cut(s)	366
PspN4I	GGNNCC	3 cut(s)	74, 306, 429
PspPI	GGNCC	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	262
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	5 cut(s)	92, 208, 213, 216, 282
Sau3AI	GATC	2 cut(s)	40, 399
Sau96I	GGNCC	1 cut(s)	435
ScrFI	CCNGG	1 cut(s)	433
SduI	GDGCHC	3 cut(s)	243, 250, 307
SetI	ASST	8 cut(s)	263, 278, 286, 364, 423, 429, 437, 465
SfaNI	GCATC	2 cut(s)	300, 417
SinI	GGWCC	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SsiI	CCGC	6 cut(s)	38, 79, 207, 215, 318, 352
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	431
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	402
TauI	GCSGC	2 cut(s)	210, 218
TfiI	GAWTC	1 cut(s)	297
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	2 cut(s)	206, 298
TseI	GCWGC	3 cut(s)	91, 212, 281
TspRI	CASTG	2 cut(s)	206, 298
Tth111I	GACNNNGTC	1 cut(s)	262
Van91I	CCANNNNNTGG	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	435
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	378
ZraI	GACGTC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.