Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015448

Physical Location & Seq

Genomic Coordinates Forward (+)

4463378 .. 4464139

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0035700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGGTTCAACAAACAAAACTTAATAGCCGTATGCTCCACAGCTTTGATCCTAATTACTTATGTCCCTCTAGCAAGTACAGTCGAAGACGACAGTGGCTTCCTCAAAGCACACAATGAGATTCGCAAAGAGCACGGTCTCCCGCCACTGCAATGGAATAAAACCTTAGCTGAGTATGCACAAAATTATGCCAATAAAAGATCTGTGGACTGCGCAATGGAGCATTCGGATGCTCCTTATTCTGAGAACATTGCGAGTGGTTTGGATATGACCGGTGAAGCAGCGACAAAGTACTGGTGCACCGAGAAAGCCGAATACGACTACAACACAAATAAATGTACCGGTCCTGAGGAAGACGGTTGCCGCCACTACACTATTATAGTTACGAGGATAACAACCCAACTTGGTTGTGCAAGGGCCAAGTGCAAAAATGGAGATATGTTTGTATCCTGCAACTATGATCCTTCTGGAGATTGGGACCAGCGTCCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009657 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPS31

Protein Analysis

164

Amino Acids

18.4

Weight (kDa)

5.17

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP	PF00188	35 - 153	5.4e-22	Cysteine-rich secretory protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21290
fragaria_vesca	FvH4_2g10470
malus_domestica	MD05G1055600.v1.1 MD10G1062900.v1.1
prunus_persica	Prupe.8G083700_v2.0.a1
pyrus_communis	pycom05g04590 pycom10g04860
rosa_chinensis	RchiOBHm_Chr6g0267951
rosa_multiflora	Rmu_sc0000434.1_g000018
rosa_roxburghii	Rroxscaffold_7G00200300
rosa_rugosa	Rorug06G0035700
rosa_samantha	Rh6BG159800 Rh6CG157000 Rh6DG145500
rosa_wichuraiana	Rw0G019630 Rw6G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	214
AciI	CCGC	2 cut(s)	143, 364
AclWI	GGATC	2 cut(s)	43, 455
AfaI	GTAC	3 cut(s)	79, 293, 340
AgeI	ACCGGT	2 cut(s)	272, 341
AgsI	TTSAA	1 cut(s)	10
AluBI	AGCT	2 cut(s)	44, 170
AluI	AGCT	2 cut(s)	44, 170
Alw21I	GWGCWC	2 cut(s)	135, 302
Alw26I	GTCTC	1 cut(s)	143
Alw44I	GTGCAC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	43, 455
AoxI	GGCC	1 cut(s)	417
ApaLI	GTGCAC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	281
AsiGI	ACCGGT	2 cut(s)	272, 341
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	3 cut(s)	344, 417, 478
AsuHPI	GGTGA	1 cut(s)	287
AvaII	GGWCC	2 cut(s)	344, 478
AxyI	CCTNAGG	1 cut(s)	348
BaeGI	GKGCMC	1 cut(s)	302
BbsI	GAAGAC	2 cut(s)	93, 360
Bbv12I	GWGCWC	2 cut(s)	135, 302
BbvI	GCAGC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	71
BfuI	GTATCC	1 cut(s)	457
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	2 cut(s)	282, 364
BlsI	GCNGC	2 cut(s)	283, 365
BmcAI	AGTACT	1 cut(s)	293
Bme18I	GGWCC	2 cut(s)	344, 478
BmgT120I	GGNCC	3 cut(s)	344, 417, 478
BmiI	GGNNCC	1 cut(s)	479
BmsI	GCATC	1 cut(s)	220
BoxI	GACNNNNGTC	1 cut(s)	483
BpiI	GAAGAC	2 cut(s)	93, 360
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	143
BsaWI	WCCGGW	2 cut(s)	272, 341
Bse118I	RCCGGY	2 cut(s)	272, 341
Bse1I	ACTGG	1 cut(s)	299
Bse21I	CCTNAGG	1 cut(s)	348
Bse3DI	GCAATG	3 cut(s)	158, 222, 249
BseGI	GGATG	1 cut(s)	235
BseMI	GCAATG	3 cut(s)	158, 222, 249
BseMII	CTCAG	3 cut(s)	162, 234, 339
BseNI	ACTGG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	293
BshFI	GGCC	1 cut(s)	419
BshTI	ACCGGT	2 cut(s)	272, 341
BsiHKAI	GWGCWC	2 cut(s)	135, 302
BsiSI	CCGG	2 cut(s)	273, 342
BslFI	GGGAC	2 cut(s)	50, 491
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	50, 491
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	419
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	135, 302
Bsp143I	GATC	3 cut(s)	48, 200, 460
BspACI	CCGC	2 cut(s)	143, 364
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	3 cut(s)	163, 235, 340
BspLI	GGNNCC	1 cut(s)	479
BspPI	GGATC	2 cut(s)	43, 455
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	3 cut(s)	158, 222, 249
BsrFI	RCCGGY	2 cut(s)	272, 341
BsrI	ACTGG	1 cut(s)	299
BssAI	RCCGGY	2 cut(s)	272, 341
BssMI	GATC	3 cut(s)	48, 200, 460
Bst4CI	ACNGT	4 cut(s)	82, 95, 137, 359
BstDEI	CTNAG	4 cut(s)	166, 171, 243, 348
BstF5I	GGATG	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	3 cut(s)	51, 203, 463
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	3 cut(s)	48, 200, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstPAI	GACNNNNGTC	1 cut(s)	483
BstSLI	GKGCMC	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	2 cut(s)	93, 360
BstX2I	RGATCY	1 cut(s)	200
BstXI	CCANNNNNNTGG	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	200
Bsu36I	CCTNAGG	1 cut(s)	348
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	2 cut(s)	100, 146
CfoI	GCGC	1 cut(s)	215
Cfr10I	RCCGGY	2 cut(s)	272, 341
Cfr13I	GGNCC	3 cut(s)	344, 417, 478
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	3 cut(s)	78, 292, 339
CspAI	ACCGGT	2 cut(s)	272, 341
CviJI	RGCY	6 cut(s)	29, 44, 99, 170, 311, 419
CviKI_1	RGCY	6 cut(s)	29, 44, 99, 170, 311, 419
CviQI	GTAC	3 cut(s)	78, 292, 339
DdeI	CTNAG	4 cut(s)	166, 171, 243, 348
DpnI	GATC	3 cut(s)	50, 202, 462
DpnII	GATC	3 cut(s)	48, 200, 460
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	344, 478
Eco81I	CCTNAGG	1 cut(s)	348
FaiI	YATR	8 cut(s)	34, 63, 177, 189, 269, 380, 440, 459
FaqI	GGGAC	2 cut(s)	50, 491
FauI	CCCGC	1 cut(s)	150
Fnu4HI	GCNGC	2 cut(s)	282, 364
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	282, 364
FspBI	CTAG	1 cut(s)	71
FspI	TGCGCA	1 cut(s)	214
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	2 cut(s)	282, 364
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	2 cut(s)	273, 342
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	2 cut(s)	273, 342
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	2 cut(s)	208, 300
Hpy188I	TCNGA	2 cut(s)	229, 244
Hpy188III	TCNNGA	2 cut(s)	347, 468
Hpy8I	GTNNAC	2 cut(s)	208, 300
HpyAV	CCTTC	1 cut(s)	474
HpyCH4III	ACNGT	4 cut(s)	82, 95, 137, 359
HpyCH4V	TGCA	6 cut(s)	151, 179, 300, 413, 426, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	4 cut(s)	166, 171, 243, 348
HspAI	GCGC	1 cut(s)	213
Kzo9I	GATC	3 cut(s)	48, 200, 460
LmnI	GCTCC	3 cut(s)	41, 220, 238
LpnPI	CCDG	6 cut(s)	280, 286, 355, 360, 453, 463
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	3 cut(s)	50, 202, 462
MboI	GATC	3 cut(s)	48, 200, 460
MboII	GAAGA	2 cut(s)	98, 365
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	2 cut(s)	135, 302
MluCI	AATT	2 cut(s)	54, 184
MnlI	CCTC	4 cut(s)	78, 113, 343, 381
MseI	TTAA	1 cut(s)	23
MslI	CAYNNNNRTG	2 cut(s)	151, 228
MspI	CCGG	2 cut(s)	273, 342
Mva1269I	GAATGC	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	3 cut(s)	48, 200, 460
NlaIV	GGNNCC	1 cut(s)	479
NsbI	TGCGCA	1 cut(s)	214
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	121
PinAI	ACCGGT	2 cut(s)	272, 341
PkrI	GCNGC	2 cut(s)	283, 365
PshAI	GACNNNNGTC	1 cut(s)	483
PspN4I	GGNNCC	1 cut(s)	479
PspPI	GGNCC	3 cut(s)	344, 417, 478
PsuI	RGATCY	1 cut(s)	200
RsaI	GTAC	3 cut(s)	79, 293, 340
RsaNI	GTAC	3 cut(s)	78, 292, 339
RseI	CAYNNNNRTG	2 cut(s)	151, 228
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	2 cut(s)	282, 364
Sau3AI	GATC	3 cut(s)	48, 200, 460
Sau96I	GGNCC	3 cut(s)	344, 417, 478
ScaI	AGTACT	1 cut(s)	293
SduI	GDGCHC	2 cut(s)	135, 302
SetI	ASST	3 cut(s)	46, 167, 172
SfaNI	GCATC	1 cut(s)	220
SinI	GGWCC	2 cut(s)	344, 478
SmiMI	CAYNNNNRTG	2 cut(s)	151, 228
Sse9I	AATT	2 cut(s)	54, 184
SsiI	CCGC	2 cut(s)	143, 364
SspMI	CTAG	1 cut(s)	71
TaaI	ACNGT	4 cut(s)	82, 95, 137, 359
TaqI	TCGA	1 cut(s)	84
TasI	AATT	2 cut(s)	54, 184
TatI	WGTACW	2 cut(s)	77, 291
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	2 cut(s)	100, 153
TseI	GCWGC	1 cut(s)	281
TspRI	CASTG	2 cut(s)	100, 153
VneI	GTGCAC	1 cut(s)	298
VpaK11BI	GGWCC	2 cut(s)	344, 478
XspI	CTAG	1 cut(s)	71
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.