Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0015448

Physical Location & Seq

Genomic Coordinates Forward (+)

5138902 .. 5139153

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g04860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCGATGATGATGCAGTGGTGCGGCGCAGCGGCGAGGCGGGTGCTGATGGCGGAGCAGCGCGCCCGCTTCACAACCTCCTCCTCCGCGGAGGCGTCAGCAGCAATTGCAAAAGAGAATGTGCTCGGGGCGCCGATGCTGTGCGGGCGAGGAGACAAGAAGACGAAGAAAGGGAAGCGATTCAAAGGGTCGTTCGGAAACGCTCGGCCGAAGAAGGAGATGATCGATCGAGCGCATCAAGGACAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009657 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPS31

Protein Analysis

84

Amino Acids

9.0

Weight (kDa)

10.74

Isoelectric Point (pI)

20.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPS31	PF17067	46 - 76	2.1e-08	Ribosomal protein S31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21290
fragaria_vesca	FvH4_2g10470
malus_domestica	MD05G1055600.v1.1 MD10G1062900.v1.1
prunus_persica	Prupe.8G083700_v2.0.a1
pyrus_communis	pycom05g04590 pycom10g04860
rosa_chinensis	RchiOBHm_Chr6g0267951
rosa_multiflora	Rmu_sc0000434.1_g000018
rosa_roxburghii	Rroxscaffold_7G00200300
rosa_rugosa	Rorug06G0035700
rosa_samantha	Rh6BG159800 Rh6CG157000 Rh6DG145500
rosa_wichuraiana	Rw0G019630 Rw6G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccII	CGCG	2 cut(s)	63, 89
AciI	CCGC	8 cut(s)	24, 32, 40, 53, 67, 87, 89, 144
AcoI	YGGCCR	1 cut(s)	206
AcyI	GRCGYC	2 cut(s)	95, 131
AgsI	TTSAA	1 cut(s)	184
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	147
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	3 cut(s)	29, 58, 101
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	5 cut(s)	29, 63, 65, 133, 235
AvaI	CYCGRG	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	3 cut(s)	41, 70, 113
BccI	CCATC	1 cut(s)	43
BcgI	CGANNNNNNTGC	3 cut(s)	25, 29, 59
BcoDI	GTCTC	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	134
BisI	GCNGC	5 cut(s)	25, 30, 33, 59, 102
BlsI	GCNGC	5 cut(s)	26, 31, 34, 60, 103
BmeT110I	CYCGRG	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	132
BmsI	GCATC	3 cut(s)	3, 126, 244
BpiI	GAAGAC	1 cut(s)	167
Bsa29I	ATCGAT	1 cut(s)	225
BsaHI	GRCGYC	2 cut(s)	95, 131
BsaJI	CCNNGG	1 cut(s)	87
BseCI	ATCGAT	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	87
BsePI	GCGCGC	1 cut(s)	61
BseRI	GAGGAG	3 cut(s)	70, 73, 165
BseX3I	CGGCCG	1 cut(s)	206
BseXI	GCAGC	3 cut(s)	41, 70, 113
Bsh1236I	CGCG	2 cut(s)	63, 89
Bsh1285I	CGRYCG	2 cut(s)	209, 229
BshFI	GGCC	1 cut(s)	208
BshNI	GGYRCC	1 cut(s)	130
BshVI	ATCGAT	1 cut(s)	225
BsiEI	CGRYCG	2 cut(s)	209, 229
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	222, 226
BspACI	CCGC	8 cut(s)	24, 32, 40, 53, 67, 87, 89, 144
BspANI	GGCC	1 cut(s)	208
BspDI	ATCGAT	1 cut(s)	225
BspFNI	CGCG	2 cut(s)	63, 89
BspLI	GGNNCC	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	87
BssHII	GCGCGC	1 cut(s)	61
BssMI	GATC	2 cut(s)	222, 226
BssNI	GRCGYC	2 cut(s)	95, 131
BstACI	GRCGYC	2 cut(s)	95, 131
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	3 cut(s)	63, 67, 146
BstDSI	CCRYGG	1 cut(s)	87
BstFNI	CGCG	2 cut(s)	63, 89
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	5 cut(s)	29, 63, 65, 133, 235
BstKTI	GATC	2 cut(s)	225, 229
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	222, 226
BstMCI	CGRYCG	2 cut(s)	209, 229
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 107, 130, 145
BstUI	CGCG	2 cut(s)	63, 89
BstV1I	GCAGC	3 cut(s)	41, 70, 113
BstV2I	GAAGAC	1 cut(s)	167
BstZI	CGGCCG	1 cut(s)	206
Bsu15I	ATCGAT	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	208
BsuTUI	ATCGAT	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	87
BtgZI	GCGATG	1 cut(s)	20
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	3 cut(s)	63, 67, 146
CfoI	GCGC	5 cut(s)	29, 63, 65, 133, 235
Cfr42I	CCGCGG	1 cut(s)	90
ClaI	ATCGAT	1 cut(s)	225
CseI	GACGC	1 cut(s)	84
CviJI	RGCY	1 cut(s)	208
CviKI_1	RGCY	1 cut(s)	208
DinI	GGCGCC	1 cut(s)	132
DpnI	GATC	2 cut(s)	224, 228
DpnII	GATC	2 cut(s)	222, 226
EaeI	YGGCCR	1 cut(s)	206
EagI	CGGCCG	1 cut(s)	206
EciI	GGCGGA	1 cut(s)	68
EclXI	CGGCCG	1 cut(s)	206
Eco52I	CGGCCG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	125
EgeI	GGCGCC	1 cut(s)	132
EheI	GGCGCC	1 cut(s)	132
FauI	CCCGC	3 cut(s)	33, 74, 137
Fnu4HI	GCNGC	5 cut(s)	25, 30, 33, 59, 102
Fsp4HI	GCNGC	5 cut(s)	25, 30, 33, 59, 102
GlaI	GCGC	5 cut(s)	28, 62, 64, 132, 234
GluI	GCNGC	5 cut(s)	25, 30, 33, 59, 102
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	208
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	5 cut(s)	29, 63, 65, 133, 235
Hin1I	GRCGYC	2 cut(s)	95, 131
Hin6I	GCGC	5 cut(s)	27, 61, 63, 131, 233
HinP1I	GCGC	5 cut(s)	27, 61, 63, 131, 233
HinfI	GANTC	1 cut(s)	180
Hpy188I	TCNGA	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	16, 110
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 107, 130, 145
Hsp92I	GRCGYC	2 cut(s)	95, 131
HspAI	GCGC	5 cut(s)	27, 61, 63, 131, 233
KasI	GGCGCC	1 cut(s)	130
KspI	CCGCGG	1 cut(s)	90
Kzo9I	GATC	2 cut(s)	222, 226
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	3 cut(s)	41, 70, 113
LweI	GCATC	3 cut(s)	3, 126, 244
MalI	GATC	2 cut(s)	224, 228
MboI	GATC	2 cut(s)	222, 226
MboII	GAAGA	3 cut(s)	172, 178, 223
MfeI	CAATTG	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	1 cut(s)	105
Mly113I	GGCGCC	1 cut(s)	131
MnlI	CCTC	6 cut(s)	30, 85, 88, 91, 94, 143
MroXI	GAANNNNTTC	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	32, 89
MunI	CAATTG	1 cut(s)	105
MvnI	CGCG	2 cut(s)	63, 89
MwoI	GCNNNNNNNGC	4 cut(s)	101, 107, 130, 145
NarI	GGCGCC	1 cut(s)	131
NdeII	GATC	2 cut(s)	222, 226
NlaIV	GGNNCC	1 cut(s)	132
NmeAIII	GCCGAG	1 cut(s)	184
PauI	GCGCGC	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	180
PkrI	GCNGC	5 cut(s)	26, 31, 34, 60, 103
Ple19I	CGATCG	1 cut(s)	229
PluTI	GGCGCC	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	132
PteI	GCGCGC	1 cut(s)	61
PvuI	CGATCG	1 cut(s)	229
SacII	CCGCGG	1 cut(s)	90
SatI	GCNGC	5 cut(s)	25, 30, 33, 59, 102
Sau3AI	GATC	2 cut(s)	222, 226
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	2 cut(s)	80, 250
SfaNI	GCATC	3 cut(s)	3, 126, 244
SfoI	GGCGCC	1 cut(s)	132
Sfr303I	CCGCGG	1 cut(s)	90
SgrBI	CCGCGG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	8 cut(s)	24, 32, 40, 53, 67, 87, 89, 144
SspDI	GGCGCC	1 cut(s)	130
TaqI	TCGA	2 cut(s)	225, 229
TasI	AATT	1 cut(s)	105
TauI	GCSGC	2 cut(s)	27, 35
TfiI	GAWTC	1 cut(s)	180
TscAI	CASTG	1 cut(s)	23
TseI	GCWGC	3 cut(s)	29, 58, 101
TspRI	CASTG	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.