Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0015448

Physical Location & Seq

Genomic Coordinates Forward (+)

11697736 .. 11698259

Gene Structure 524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G083700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCGATGATGCAGTGGTGCGGCGCAGTAGCAAGGCGGGTGCTGATGACGGAGCAGCGTGCCCTTTTCACAACAACCTCATCACCATCTTCTTCAGCAGTAGCAGCAGCGGCGATAATGAGTTCTATTGGGGCGCCGATCGTGTGTGGACGAGGGGACAAGAAGACGAAGAAAGGAAAGCGATTCAAAGGGTCGTACGGAAACGCTCGACCGAAGAAGGAGAAGAAGATAGAGCGCATCAAGGACAAGGTTGAGGTGCCCAGGTCCACTCCTTGGCCTCTTCCCTTCAAGCTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009657 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPS31

Protein Analysis

100

Amino Acids

10.87

Weight (kDa)

10.7

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21290
fragaria_vesca	FvH4_2g10470
malus_domestica	MD05G1055600.v1.1 MD10G1062900.v1.1
prunus_persica	Prupe.8G083700_v2.0.a1
pyrus_communis	pycom05g04590 pycom10g04860
rosa_chinensis	RchiOBHm_Chr6g0267951
rosa_multiflora	Rmu_sc0000434.1_g000018
rosa_roxburghii	Rroxscaffold_7G00200300
rosa_rugosa	Rorug06G0035700
rosa_samantha	Rh6BG159800 Rh6CG157000 Rh6DG145500
rosa_wichuraiana	Rw0G019630 Rw6G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	133, 256
AccB7I	CCANNNNNTGG	1 cut(s)	273
AciI	CCGC	3 cut(s)	21, 37, 110
AcuI	CTGAAG	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	187, 289
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	3 cut(s)	55, 104, 107
AspLEI	GCGC	3 cut(s)	26, 136, 237
AspS9I	GGNCC	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	264
BaeGI	GKGCMC	2 cut(s)	64, 261
BanI	GGYRCC	2 cut(s)	133, 256
BbsI	GAAGAC	1 cut(s)	170
BbvI	GCAGC	3 cut(s)	67, 116, 119
BccI	CCATC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	262
BfoI	RGCGCY	1 cut(s)	137
BisI	GCNGC	5 cut(s)	22, 56, 105, 108, 111
BlsI	GCNGC	5 cut(s)	23, 57, 106, 109, 112
Bme1390I	CCNGG	1 cut(s)	262
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	135, 258
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	260, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	260, 272
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseSI	GKGCMC	2 cut(s)	64, 261
BseXI	GCAGC	3 cut(s)	67, 116, 119
Bsh1285I	CGRYCG	2 cut(s)	141, 212
BshFI	GGCC	1 cut(s)	277
BshNI	GGYRCC	2 cut(s)	133, 256
BsiEI	CGRYCG	2 cut(s)	141, 212
BsiWI	CGTACG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	277
Bsp1286I	GDGCHC	2 cut(s)	64, 261
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	3 cut(s)	21, 37, 110
BspANI	GGCC	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	135, 258
BspT107I	GGYRCC	2 cut(s)	133, 256
BssECI	CCNNGG	2 cut(s)	260, 272
BssMI	GATC	1 cut(s)	138
BssNI	GRCGYC	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	285
BstACI	GRCGYC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	60
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	3 cut(s)	26, 136, 237
BstKTI	GATC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	138
BstMCI	CGRYCG	2 cut(s)	141, 212
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 110
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	260
BstSLI	GKGCMC	2 cut(s)	64, 261
BstV1I	GCAGC	3 cut(s)	67, 116, 119
BstV2I	GAAGAC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	277
BtgZI	GCGATG	1 cut(s)	20
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	60
CfoI	GCGC	3 cut(s)	26, 136, 237
Cfr13I	GGNCC	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	196
CviJI	RGCY	2 cut(s)	277, 292
CviKI_1	RGCY	2 cut(s)	277, 292
CviQI	GTAC	1 cut(s)	196
DinI	GGCGCC	1 cut(s)	135
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	272
EgeI	GGCGCC	1 cut(s)	135
EheI	GGCGCC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	272
FaqI	GGGAC	1 cut(s)	170
FauI	CCCGC	1 cut(s)	30
Fnu4HI	GCNGC	5 cut(s)	22, 56, 105, 108, 111
Fsp4HI	GCNGC	5 cut(s)	22, 56, 105, 108, 111
GlaI	GCGC	3 cut(s)	25, 135, 236
GluI	GCNGC	5 cut(s)	22, 56, 105, 108, 111
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	277
HhaI	GCGC	3 cut(s)	26, 136, 237
Hin1I	GRCGYC	1 cut(s)	134
Hin6I	GCGC	3 cut(s)	24, 134, 235
HinP1I	GCGC	3 cut(s)	24, 134, 235
HinfI	GANTC	1 cut(s)	183
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	2 cut(s)	149, 267
Hpy188I	TCNGA	1 cut(s)	299
Hpy8I	GTNNAC	2 cut(s)	149, 267
HpyAV	CCTTC	2 cut(s)	211, 295
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 110
Hsp92I	GRCGYC	1 cut(s)	134
HspAI	GCGC	3 cut(s)	24, 134, 235
KasI	GGCGCC	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	2 cut(s)	247, 274
Lsp1109I	GCAGC	3 cut(s)	67, 116, 119
LweI	GCATC	1 cut(s)	246
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	8 cut(s)	81, 84, 175, 181, 226, 235, 238, 272
MhlI	GDGCHC	2 cut(s)	64, 261
Mly113I	GGCGCC	1 cut(s)	134
MnlI	CCTC	4 cut(s)	88, 146, 247, 288
MspA1I	CMGCKG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	104, 110
NarI	GGCGCC	1 cut(s)	134
NdeII	GATC	1 cut(s)	138
NlaIV	GGNNCC	2 cut(s)	135, 258
PfeI	GAWTC	1 cut(s)	183
Pfl23II	CGTACG	1 cut(s)	195
PflMI	CCANNNNNTGG	1 cut(s)	273
PkrI	GCNGC	5 cut(s)	23, 57, 106, 109, 112
Ple19I	CGATCG	1 cut(s)	141
PluTI	GGCGCC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspLI	CGTACG	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	135, 258
PspPI	GGNCC	1 cut(s)	264
PvuI	CGATCG	1 cut(s)	141
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SatI	GCNGC	5 cut(s)	22, 56, 105, 108, 111
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	2 cut(s)	64, 261
SetI	ASST	5 cut(s)	80, 252, 258, 266, 294
SfaNI	GCATC	1 cut(s)	246
SfoI	GGCGCC	1 cut(s)	135
SinI	GGWCC	1 cut(s)	264
SsiI	CCGC	3 cut(s)	21, 37, 110
SspDI	GGCGCC	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	272
TaqI	TCGA	1 cut(s)	208
TaqII	GACCGA	1 cut(s)	226
TauI	GCSGC	2 cut(s)	24, 113
TfiI	GAWTC	1 cut(s)	183
TscAI	CASTG	1 cut(s)	20
TseI	GCWGC	3 cut(s)	55, 104, 107
TspGWI	ACGGA	2 cut(s)	65, 213
TspRI	CASTG	1 cut(s)	20
Van91I	CCANNNNNTGG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.