Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0015448

Physical Location & Seq

Genomic Coordinates Reverse (-)

25970729 .. 25976509

Gene Structure 5781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG159800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCGATGGTGCAGTGGTGCGGCGCAGCGGCGAGGCGAGTGTTGGTGAGGGAGCACCGTGCCCTCTTCACGACCTCGTCATCGTCGACGTCATCAGCTCAAAGCAGTGGAATCGGGGCTCCGATGCTGTGCGGGCGAGGGGACAAGAAGACGAAGAAGGGGAAGCGGTTCAAAGGGTCGTACGGGAACGCTAGGCCGAAGAAGGAGAAGATGATCGAGCGCATCAAGGACAAGACTTCTGTTGATCATCTCTGTCTTGGCGAGTCTCCAATGTTTTTTGGGCATCTCATCTTTTTATTCCCAAACAGGGCTTACCAGACGTTGACTAAAGTTTGGGAACCTTTCTCTGGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009657 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0032544 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPS31

Protein Analysis

118

Amino Acids

13.14

Weight (kDa)

10.26

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPS31	PF17067	27 - 69	1.5e-10	Ribosomal protein S31e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21290
fragaria_vesca	FvH4_2g10470
malus_domestica	MD05G1055600.v1.1 MD10G1062900.v1.1
prunus_persica	Prupe.8G083700_v2.0.a1
pyrus_communis	pycom05g04590 pycom10g04860
rosa_chinensis	RchiOBHm_Chr6g0267951
rosa_multiflora	Rmu_sc0000434.1_g000018
rosa_roxburghii	Rroxscaffold_7G00200300
rosa_rugosa	Rorug06G0035700
rosa_samantha	Rh6BG159800 Rh6CG157000 Rh6DG145500
rosa_wichuraiana	Rw0G019630 Rw6G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	86
AciI	CCGC	4 cut(s)	21, 29, 132, 166
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	307, 347
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	270
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	26, 222
AsuHPI	GGTGA	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	1 cut(s)	192
BisI	GCNGC	3 cut(s)	22, 27, 30
BlsI	GCNGC	3 cut(s)	23, 28, 31
BmiI	GGNNCC	2 cut(s)	120, 339
BmsI	GCATC	3 cut(s)	114, 231, 292
BpiI	GAAGAC	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 347
BseLI	CCNNNNNNNGG	2 cut(s)	307, 347
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	57
BsiWI	CGTACG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	307, 347
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	196
Bsp1286I	GDGCHC	3 cut(s)	57, 64, 121
Bsp143I	GATC	2 cut(s)	213, 244
BspACI	CCGC	4 cut(s)	21, 29, 132, 166
BspANI	GGCC	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	120, 339
BssMI	GATC	2 cut(s)	213, 244
BssNI	GRCGYC	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	134
BstHHI	GCGC	2 cut(s)	26, 222
BstKTI	GATC	2 cut(s)	216, 247
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	2 cut(s)	213, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstSLI	GKGCMC	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	196
BtgZI	GCGATG	1 cut(s)	20
BtsI	GCAGTG	2 cut(s)	20, 112
BtsIMutI	CAGTG	2 cut(s)	20, 112
Cac8I	GCNNGC	1 cut(s)	134
CfoI	GCGC	2 cut(s)	26, 222
Csp6I	GTAC	1 cut(s)	181
CviJI	RGCY	4 cut(s)	98, 119, 196, 311
CviKI_1	RGCY	4 cut(s)	98, 119, 196, 311
CviQI	GTAC	1 cut(s)	181
DpnI	GATC	2 cut(s)	215, 246
DpnII	GATC	2 cut(s)	213, 244
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	121
FaqI	GGGAC	1 cut(s)	155
FauI	CCCGC	1 cut(s)	125
FbaI	TGATCA	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	3 cut(s)	22, 27, 30
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	3 cut(s)	22, 27, 30
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	2 cut(s)	25, 221
GluI	GCNGC	3 cut(s)	22, 27, 30
HaeIII	GGCC	1 cut(s)	196
HhaI	GCGC	2 cut(s)	26, 222
Hin1I	GRCGYC	1 cut(s)	89
Hin6I	GCGC	2 cut(s)	24, 220
HinP1I	GCGC	2 cut(s)	24, 220
HincII	GTYRAC	2 cut(s)	87, 324
HindII	GTYRAC	2 cut(s)	87, 324
HinfI	GANTC	2 cut(s)	111, 263
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	87, 324
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	2 cut(s)	87, 324
Hpy99I	CGWCG	2 cut(s)	88, 91
HpyAV	CCTTC	2 cut(s)	151, 196
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	2 cut(s)	89, 320
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpySE526I	ACGT	2 cut(s)	89, 320
Hsp92I	GRCGYC	1 cut(s)	89
HspAI	GCGC	2 cut(s)	24, 220
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	213, 244
LmnI	GCTCC	2 cut(s)	52, 124
LpnPI	CCDG	3 cut(s)	292, 329, 333
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	3 cut(s)	114, 231, 292
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	2 cut(s)	89, 320
MalI	GATC	2 cut(s)	215, 246
MboI	GATC	2 cut(s)	213, 244
MboII	GAAGA	5 cut(s)	58, 160, 166, 211, 220
MhlI	GDGCHC	3 cut(s)	57, 64, 121
MlyI	GAGTC	1 cut(s)	272
MnlI	CCTC	5 cut(s)	27, 42, 74, 85, 131
MroXI	GAANNNNTTC	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	133
NdeII	GATC	2 cut(s)	213, 244
NlaIV	GGNNCC	2 cut(s)	120, 339
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	111
Pfl23II	CGTACG	1 cut(s)	180
PflFI	GACNNNGTC	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	23, 28, 31
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PspLI	CGTACG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	120, 339
PsyI	GACNNNGTC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SalI	GTCGAC	1 cut(s)	85
SatI	GCNGC	3 cut(s)	22, 27, 30
Sau3AI	GATC	2 cut(s)	213, 244
SchI	GAGTC	1 cut(s)	272
SduI	GDGCHC	3 cut(s)	57, 64, 121
SetI	ASST	5 cut(s)	77, 92, 100, 323, 343
SfaNI	GCATC	3 cut(s)	114, 231, 292
SgrDI	CGTCGACG	1 cut(s)	85
SsiI	CCGC	4 cut(s)	21, 29, 132, 166
SspMI	CTAG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	2 cut(s)	92, 323
TaqI	TCGA	2 cut(s)	86, 216
TauI	GCSGC	2 cut(s)	24, 32
TfiI	GAWTC	1 cut(s)	111
TscAI	CASTG	2 cut(s)	20, 112
TseI	GCWGC	1 cut(s)	26
TspRI	CASTG	2 cut(s)	20, 112
Tth111I	GACNNNGTC	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	192
ZraI	GACGTC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.