DNA-binding transcription factor activity
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G21650 |
| fragaria_vesca | FvH4_2g08910 FvH4_2g08910 FvH4_6g06380 FvH4_6g06380 |
| malus_domestica | MD05G1065500.v1.1 MD10G1075200.v1.1 |
| prunus_persica | Prupe.8G096300_v2.0.a1 |
| pyrus_communis | pycom05g05690 |
| rosa_chinensis | RchiOBHm_Chr3g0455471 RchiOBHm_Chr6g0264521 |
| rosa_laevigata | RLG00000014247 RLG00000025357 |
| rosa_multiflora | Rmu_sc0000578.1_g000011 Rmu_sc0005281.1_g000011 |
| rosa_roxburghii | Rroxscaffold_176G00431860 Rroxscaffold_6G00424240 |
| rosa_rugosa | Rorug03G0007800 Rorug06G0015800 |
| rosa_samantha | Rh3AG067300 Rh3BG069600 Rh3CG068100 Rh3DG069700 Rh6AG132900 Rh6BG130500 Rh6CG128700 Rh6DG115900 |
| rosa_wichuraiana | Rw0G009760 Rw3G005330 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 100 |
| AcvI | CACGTG | 1 cut(s) | 211 |
| AluBI | AGCT | 3 cut(s) | 128, 155, 298 |
| AluI | AGCT | 3 cut(s) | 128, 155, 298 |
| Alw21I | GWGCWC | 1 cut(s) | 76 |
| Alw26I | GTCTC | 1 cut(s) | 154 |
| Aor13HI | TCCGGA | 1 cut(s) | 100 |
| ApeKI | GCWGC | 2 cut(s) | 262, 298 |
| AspS9I | GGNCC | 1 cut(s) | 103 |
| AvaII | GGWCC | 1 cut(s) | 103 |
| BbrPI | CACGTG | 1 cut(s) | 211 |
| BbsI | GAAGAC | 1 cut(s) | 12 |
| Bbv12I | GWGCWC | 1 cut(s) | 76 |
| BbvI | GCAGC | 2 cut(s) | 249, 285 |
| BcoDI | GTCTC | 1 cut(s) | 154 |
| BfaI | CTAG | 3 cut(s) | 77, 123, 176 |
| BfmI | CTRYAG | 2 cut(s) | 237, 299 |
| BisI | GCNGC | 2 cut(s) | 263, 299 |
| BlsI | GCNGC | 2 cut(s) | 264, 300 |
| Bme18I | GGWCC | 1 cut(s) | 103 |
| BmgT120I | GGNCC | 1 cut(s) | 103 |
| BmsI | GCATC | 2 cut(s) | 14, 204 |
| BpiI | GAAGAC | 1 cut(s) | 12 |
| BsaAI | YACGTR | 1 cut(s) | 211 |
| BsaWI | WCCGGW | 1 cut(s) | 100 |
| BseAI | TCCGGA | 1 cut(s) | 100 |
| BseGI | GGATG | 1 cut(s) | 288 |
| BseXI | GCAGC | 2 cut(s) | 249, 285 |
| BsiHKAI | GWGCWC | 1 cut(s) | 76 |
| BsiSI | CCGG | 1 cut(s) | 101 |
| BsmAI | GTCTC | 1 cut(s) | 154 |
| Bsp1286I | GDGCHC | 1 cut(s) | 76 |
| Bsp13I | TCCGGA | 1 cut(s) | 100 |
| BspEI | TCCGGA | 1 cut(s) | 100 |
| BspMAI | CTGCAG | 1 cut(s) | 303 |
| Bst4CI | ACNGT | 3 cut(s) | 46, 107, 165 |
| BstBAI | YACGTR | 1 cut(s) | 211 |
| BstC8I | GCNNGC | 2 cut(s) | 72, 260 |
| BstDEI | CTNAG | 1 cut(s) | 156 |
| BstF5I | GGATG | 1 cut(s) | 288 |
| BstMAI | GTCTC | 1 cut(s) | 154 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 255 |
| BstSFI | CTRYAG | 2 cut(s) | 237, 299 |
| BstV1I | GCAGC | 2 cut(s) | 249, 285 |
| BstV2I | GAAGAC | 1 cut(s) | 12 |
| BtsCI | GGATG | 1 cut(s) | 288 |
| Cac8I | GCNNGC | 2 cut(s) | 72, 260 |
| Cfr13I | GGNCC | 1 cut(s) | 103 |
| CpoI | CGGWCCG | 1 cut(s) | 103 |
| CspI | CGGWCCG | 1 cut(s) | 103 |
| CviAII | CATG | 2 cut(s) | 39, 292 |
| CviJI | RGCY | 8 cut(s) | 12, 30, 36, 62, 128, 155, 262, 298 |
| CviKI_1 | RGCY | 8 cut(s) | 12, 30, 36, 62, 128, 155, 262, 298 |
| DdeI | CTNAG | 1 cut(s) | 156 |
| Eco47I | GGWCC | 1 cut(s) | 103 |
| Eco72I | CACGTG | 1 cut(s) | 211 |
| FaeI | CATG | 2 cut(s) | 42, 295 |
| FaiI | YATR | 5 cut(s) | 27, 40, 87, 168, 293 |
| FatI | CATG | 2 cut(s) | 38, 291 |
| Fnu4HI | GCNGC | 2 cut(s) | 263, 299 |
| FokI | GGATG | 1 cut(s) | 295 |
| Fsp4HI | GCNGC | 2 cut(s) | 263, 299 |
| FspBI | CTAG | 3 cut(s) | 77, 123, 176 |
| GluI | GCNGC | 2 cut(s) | 263, 299 |
| HapII | CCGG | 1 cut(s) | 101 |
| Hin1II | CATG | 2 cut(s) | 42, 295 |
| HpaII | CCGG | 1 cut(s) | 101 |
| Hpy188III | TCNNGA | 3 cut(s) | 101, 182, 199 |
| HpyAV | CCTTC | 1 cut(s) | 182 |
| HpyCH4III | ACNGT | 3 cut(s) | 46, 107, 165 |
| HpyCH4IV | ACGT | 1 cut(s) | 210 |
| HpyCH4V | TGCA | 1 cut(s) | 301 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 255 |
| HpyF3I | CTNAG | 1 cut(s) | 156 |
| HpySE526I | ACGT | 1 cut(s) | 210 |
| Hsp92II | CATG | 2 cut(s) | 42, 295 |
| Kpn2I | TCCGGA | 1 cut(s) | 100 |
| LpnPI | CCDG | 6 cut(s) | 18, 114, 159, 225, 234, 244 |
| Lsp1109I | GCAGC | 2 cut(s) | 249, 285 |
| LweI | GCATC | 2 cut(s) | 14, 204 |
| MaeI | CTAG | 3 cut(s) | 77, 123, 176 |
| MaeII | ACGT | 1 cut(s) | 210 |
| MaeIII | GTNAC | 2 cut(s) | 182, 206 |
| MboII | GAAGA | 2 cut(s) | 12, 161 |
| MhlI | GDGCHC | 1 cut(s) | 76 |
| MnlI | CCTC | 3 cut(s) | 248, 265, 273 |
| MroI | TCCGGA | 1 cut(s) | 100 |
| MseI | TTAA | 1 cut(s) | 48 |
| MspI | CCGG | 1 cut(s) | 101 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 255 |
| NlaIII | CATG | 2 cut(s) | 42, 295 |
| NmuCI | GTSAC | 2 cut(s) | 182, 206 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 195 |
| PkrI | GCNGC | 2 cut(s) | 264, 300 |
| PmaCI | CACGTG | 1 cut(s) | 211 |
| PmlI | CACGTG | 1 cut(s) | 211 |
| Ppu21I | YACGTR | 1 cut(s) | 211 |
| PspCI | CACGTG | 1 cut(s) | 211 |
| PspPI | GGNCC | 1 cut(s) | 103 |
| PstI | CTGCAG | 1 cut(s) | 303 |
| Rsr2I | CGGWCCG | 1 cut(s) | 103 |
| RsrII | CGGWCCG | 1 cut(s) | 103 |
| SaqAI | TTAA | 1 cut(s) | 48 |
| SatI | GCNGC | 2 cut(s) | 263, 299 |
| Sau96I | GGNCC | 1 cut(s) | 103 |
| SduI | GDGCHC | 1 cut(s) | 76 |
| SetI | ASST | 5 cut(s) | 130, 157, 174, 213, 300 |
| SfaNI | GCATC | 2 cut(s) | 14, 204 |
| SfcI | CTRYAG | 2 cut(s) | 237, 299 |
| SinI | GGWCC | 1 cut(s) | 103 |
| SspMI | CTAG | 3 cut(s) | 77, 123, 176 |
| TaaI | ACNGT | 3 cut(s) | 46, 107, 165 |
| TaiI | ACGT | 1 cut(s) | 213 |
| TaqI | TCGA | 2 cut(s) | 189, 198 |
| Tru1I | TTAA | 1 cut(s) | 48 |
| Tru9I | TTAA | 1 cut(s) | 48 |
| TseFI | GTSAC | 2 cut(s) | 182, 206 |
| TseI | GCWGC | 2 cut(s) | 262, 298 |
| Tsp45I | GTSAC | 2 cut(s) | 182, 206 |
| VpaK11BI | GGWCC | 1 cut(s) | 103 |
| XspI | CTAG | 3 cut(s) | 77, 123, 176 |