Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005231

Physical Location & Seq

Genomic Coordinates Reverse (-)

4685988 .. 4687458

Gene Structure 1471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG067300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCATCCAGCTCAGTGACTTCCTGTAACTCGGGCTCGTCTTGGACTGCCAAGCAGAACAAGGCCTTCGAGATAGCTCTAGCCCTTTACGACAAGGACACCGCCGACCGCTGGTACAATGTTGCCAGGGCCGTTGGGAATAAGACTCCCGAGGAAGTTAAGAGGCACTATGACCTTCTTGTGGAAGATGTGAAGCTTATCGAGTCCGGCCAAATTCCTTTCCCGGATTACATGACTTGTGGTGGGAGTGGGAGTGGGAGTGGCAACATCGGTCATGATGAGGAAAAGAGGATGAGGAACCTGAAGCTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0080090 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

104

Amino Acids

11.48

Weight (kDa)

6.27

Isoelectric Point (pI)

67.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21650
fragaria_vesca	FvH4_2g08910 FvH4_2g08910 FvH4_6g06380 FvH4_6g06380
malus_domestica	MD05G1065500.v1.1 MD10G1075200.v1.1
prunus_persica	Prupe.8G096300_v2.0.a1
pyrus_communis	pycom05g05690
rosa_chinensis	RchiOBHm_Chr3g0455471 RchiOBHm_Chr6g0264521
rosa_laevigata	RLG00000014247 RLG00000025357
rosa_multiflora	Rmu_sc0000578.1_g000011 Rmu_sc0005281.1_g000011
rosa_roxburghii	Rroxscaffold_176G00431860 Rroxscaffold_6G00424240
rosa_rugosa	Rorug03G0007800 Rorug06G0015800
rosa_samantha	Rh3AG067300 Rh3BG069600 Rh3CG068100 Rh3DG069700 Rh6AG132900 Rh6BG130500 Rh6CG128700 Rh6DG115900
rosa_wichuraiana	Rw0G009760 Rw3G005330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	102, 109
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	213
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	111, 181
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	4 cut(s)	12, 77, 196, 307
AluI	AGCT	4 cut(s)	12, 77, 196, 307
Ama87I	CYCGRG	2 cut(s)	31, 149
AoxI	GGCC	3 cut(s)	63, 129, 208
ApoI	RAATTY	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	224
AvaI	CYCGRG	2 cut(s)	31, 149
BanII	GRGCYC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	1 cut(s)	80
Bme1390I	CCNGG	2 cut(s)	127, 224
BmeT110I	CYCGRG	2 cut(s)	31, 149
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	299
BmrFI	CCNGG	2 cut(s)	127, 224
BmsI	GCATC	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	126, 150
BsaXI	ACNNNNNCTCC	4 cut(s)	238, 244, 268, 274
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 181
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	126, 150
BseGI	GGATG	2 cut(s)	5, 297
BseLI	CCNNNNNNNGG	2 cut(s)	111, 181
BseMII	CTCAG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	65, 131, 210
BsiEI	CGRYCG	1 cut(s)	109
BsiHKCI	CYCGRG	2 cut(s)	31, 149
BsiSI	CCGG	2 cut(s)	207, 224
BslI	CCNNNNNNNGG	2 cut(s)	111, 181
BsnI	GGCC	3 cut(s)	65, 131, 210
BsoBI	CYCGRG	2 cut(s)	31, 149
Bsp1286I	GDGCHC	1 cut(s)	38
BspACI	CCGC	2 cut(s)	102, 109
BspANI	GGCC	3 cut(s)	65, 131, 210
BspCNI	CTCAG	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	299
BssECI	CCNNGG	2 cut(s)	126, 150
Bst2UI	CCWGG	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	13
BstF5I	GGATG	2 cut(s)	5, 297
BstMCI	CGRYCG	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	2 cut(s)	125, 222
BsuRI	GGCC	3 cut(s)	65, 131, 210
BtsCI	GGATG	2 cut(s)	5, 297
BtsIMutI	CAGTG	2 cut(s)	21, 310
CciI	TCATGA	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	2 cut(s)	232, 275
CviJI	RGCY	9 cut(s)	12, 36, 65, 77, 83, 131, 196, 210, 307
CviKI_1	RGCY	9 cut(s)	12, 36, 65, 77, 83, 131, 196, 210, 307
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	208
Eco147I	AGGCCT	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	38
Eco88I	CYCGRG	2 cut(s)	31, 149
EcoRII	CCWGG	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	2 cut(s)	235, 278
FaiI	YATR	3 cut(s)	171, 233, 276
FatI	CATG	2 cut(s)	231, 274
FokI	GGATG	1 cut(s)	304
FriOI	GRGCYC	1 cut(s)	38
FspBI	CTAG	1 cut(s)	80
HaeIII	GGCC	3 cut(s)	65, 131, 210
HapII	CCGG	2 cut(s)	207, 224
Hin1II	CATG	2 cut(s)	235, 278
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	2 cut(s)	145, 203
HpaII	CCGG	2 cut(s)	207, 224
Hpy188III	TCNNGA	3 cut(s)	70, 149, 275
HpyAV	CCTTC	2 cut(s)	76, 185
HpyF3I	CTNAG	1 cut(s)	13
Hsp92II	CATG	2 cut(s)	235, 278
LmnI	GCTCC	1 cut(s)	312
LpnPI	CCDG	7 cut(s)	22, 37, 97, 112, 139, 220, 237
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	2 cut(s)	16, 26
MboII	GAAGA	1 cut(s)	197
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	213
MlyI	GAGTC	2 cut(s)	139, 212
MnlI	CCTC	5 cut(s)	145, 156, 274, 282, 288
MseI	TTAA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	2 cut(s)	207, 224
MspR9I	CCNGG	2 cut(s)	127, 224
MvaI	CCWGG	1 cut(s)	127
NciI	CCSGG	1 cut(s)	224
NlaIII	CATG	2 cut(s)	235, 278
NlaIV	GGNNCC	1 cut(s)	299
NmuCI	GTSAC	1 cut(s)	16
PagI	TCATGA	1 cut(s)	274
PceI	AGGCCT	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	222
PleI	GAGTC	2 cut(s)	139, 211
PpsI	GAGTC	2 cut(s)	139, 211
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	299
PspPI	GGNCC	1 cut(s)	129
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	159
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	2 cut(s)	139, 212
ScrFI	CCNGG	2 cut(s)	127, 224
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	6 cut(s)	14, 79, 177, 198, 303, 309
SfaNI	GCATC	1 cut(s)	14
Sse9I	AATT	1 cut(s)	213
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	2 cut(s)	102, 109
SspMI	CTAG	1 cut(s)	80
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	125, 222
TaqI	TCGA	2 cut(s)	69, 201
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspRI	CASTG	1 cut(s)	21
XapI	RAATTY	1 cut(s)	213
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.