Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005231

Physical Location & Seq

Genomic Coordinates Reverse (-)

10660294 .. 10661270

Gene Structure 977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1075200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCATCAAGCTCAATGTCCTCAAGAGGCTCCGACTCCTCCTGGACTGCCAAGCAAAACAAAGCCTTTGAAAAGGCTTTGGCTGTCTATGACAAGGACACTGCCGACCGCTGGTACAATGTCGCCAAGGCGGTTGGTGGCAAAACACCGGAGGAAGTCAAGAGGCACTATGAGCTTCTTGTAGAAGATGTCAAGCATATTGAGTCAGGCCAAGTTCCCTTCCCAGATTACAGGACTACTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0080090 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

82

Amino Acids

9.05

Weight (kDa)

6.72

Isoelectric Point (pI)

71.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 57	1.3e-06	Myb-like DNA-binding domain
Myb_DNA-binding_2	PF23082	14 - 60	5.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21650
fragaria_vesca	FvH4_2g08910 FvH4_2g08910 FvH4_6g06380 FvH4_6g06380
malus_domestica	MD05G1065500.v1.1 MD10G1075200.v1.1
prunus_persica	Prupe.8G096300_v2.0.a1
pyrus_communis	pycom05g05690
rosa_chinensis	RchiOBHm_Chr3g0455471 RchiOBHm_Chr6g0264521
rosa_laevigata	RLG00000014247 RLG00000025357
rosa_multiflora	Rmu_sc0000578.1_g000011 Rmu_sc0005281.1_g000011
rosa_roxburghii	Rroxscaffold_176G00431860 Rroxscaffold_6G00424240
rosa_rugosa	Rorug03G0007800 Rorug06G0015800
rosa_samantha	Rh3AG067300 Rh3BG069600 Rh3CG068100 Rh3DG069700 Rh6AG132900 Rh6BG130500 Rh6CG128700 Rh6DG115900
rosa_wichuraiana	Rw0G009760 Rw3G005330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	109, 131
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	2 cut(s)	12, 175
AluI	AGCT	2 cut(s)	12, 175
AoxI	GGCC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	7
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	210
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	111
BsnI	GGCC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	109, 131
BspANI	GGCC	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	43
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	115
CviJI	RGCY	7 cut(s)	12, 30, 65, 77, 83, 175, 210
CviKI_1	RGCY	7 cut(s)	12, 30, 65, 77, 83, 175, 210
CviQI	GTAC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaiI	YATR	3 cut(s)	90, 171, 198
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	1 cut(s)	149
HinfI	GANTC	2 cut(s)	35, 203
HpaII	CCGG	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	24, 160
HpyAV	CCTTC	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	8 cut(s)	28, 55, 97, 162, 192, 217, 225, 237
LweI	GCATC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	197
MlyI	GAGTC	2 cut(s)	29, 212
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	5 cut(s)	20, 31, 49, 145, 156
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	172
NlaIV	GGNNCC	1 cut(s)	31
PfoI	TCCNGGA	1 cut(s)	41
PleI	GAGTC	2 cut(s)	29, 211
PpsI	GAGTC	2 cut(s)	29, 211
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	31
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	29, 212
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	2 cut(s)	14, 177
SfaNI	GCATC	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SsiI	CCGC	2 cut(s)	109, 131
StyD4I	CCNGG	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	126
TscAI	CASTG	1 cut(s)	106
TspRI	CASTG	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.