Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005231

Physical Location & Seq

Genomic Coordinates Reverse (-)

7059474 .. 7059761

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g05690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCATCAAGCTCAATGTCCTCAAGAGGCTCTGGCTCCTCCTGGACTGCCAAGCAAAACAAAGCCTTTGAAAAGGCTCTGGCTGTCTACGACAAGGACACTGCTGACCGCTGGTACAATGTGGCCAAAGCGGTCGGCGGCAAAACACCGGAGGAAGTCAAAAGGCACTATGAGGTTCTTGTGGAAGATGTCAAGCATATTGAGTCAGGCCAGGTGCCCTTCCCAGATTACAGGACTACTGGTGGGAACAGCCATGGCCACCACATGAGTGATGAGGAAAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0080090 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

96

Amino Acids

10.59

Weight (kDa)

6.97

Isoelectric Point (pI)

71.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 57	1.9e-06	Myb-like DNA-binding domain
Myb_DNA-binding_2	PF23082	14 - 60	9.8e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21650
fragaria_vesca	FvH4_2g08910 FvH4_2g08910 FvH4_6g06380 FvH4_6g06380
malus_domestica	MD05G1065500.v1.1 MD10G1075200.v1.1
prunus_persica	Prupe.8G096300_v2.0.a1
pyrus_communis	pycom05g05690
rosa_chinensis	RchiOBHm_Chr3g0455471 RchiOBHm_Chr6g0264521
rosa_laevigata	RLG00000014247 RLG00000025357
rosa_multiflora	Rmu_sc0000578.1_g000011 Rmu_sc0005281.1_g000011
rosa_roxburghii	Rroxscaffold_176G00431860 Rroxscaffold_6G00424240
rosa_rugosa	Rorug03G0007800 Rorug06G0015800
rosa_samantha	Rh3AG067300 Rh3BG069600 Rh3CG068100 Rh3DG069700 Rh6AG132900 Rh6BG130500 Rh6CG128700 Rh6DG115900
rosa_wichuraiana	Rw0G009760 Rw3G005330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	3 cut(s)	109, 131, 138
AcoI	YGGCCR	2 cut(s)	123, 256
AfaI	GTAC	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	2 cut(s)	41, 210
AleI	CACNNNNGTG	1 cut(s)	267
AluBI	AGCT	1 cut(s)	12
AluI	AGCT	1 cut(s)	12
AoxI	GGCC	3 cut(s)	123, 208, 256
BaeGI	GKGCMC	1 cut(s)	219
BalI	TGGCCA	2 cut(s)	125, 258
BanI	GGYRCC	1 cut(s)	214
BciT130I	CCWGG	2 cut(s)	43, 212
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
Bme1390I	CCNGG	2 cut(s)	43, 212
BmiI	GGNNCC	2 cut(s)	37, 216
BmrFI	CCNGG	2 cut(s)	43, 212
BmsI	GCATC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	7
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	2 cut(s)	43, 212
BseDI	CCNNGG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	28
BseSI	GKGCMC	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	3 cut(s)	125, 210, 258
BshNI	GGYRCC	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	149
BsnI	GGCC	3 cut(s)	125, 210, 258
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	3 cut(s)	109, 131, 138
BspANI	GGCC	3 cut(s)	125, 210, 258
BspLI	GGNNCC	2 cut(s)	37, 216
BspT107I	GGYRCC	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	2 cut(s)	43, 212
BstDSI	CCRYGG	1 cut(s)	253
BstMCI	CGRYCG	1 cut(s)	135
BstNI	CCWGG	2 cut(s)	43, 212
BstSCI	CCNGG	2 cut(s)	41, 210
BstSLI	GKGCMC	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	125, 210, 258
BtgI	CCRYGG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	2 cut(s)	254, 265
CviQI	GTAC	1 cut(s)	115
EaeI	YGGCCR	2 cut(s)	123, 256
Eco130I	CCWWGG	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	41, 210
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	257, 268
FaiI	YATR	4 cut(s)	171, 198, 255, 266
FatI	CATG	2 cut(s)	253, 264
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	139
HaeIII	GGCC	3 cut(s)	125, 210, 258
HapII	CCGG	1 cut(s)	149
Hin1II	CATG	2 cut(s)	257, 268
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	24
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	257, 268
LmnI	GCTCC	1 cut(s)	41
LweI	GCATC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	197
MhlI	GDGCHC	1 cut(s)	219
MlsI	TGGCCA	2 cut(s)	125, 258
MluNI	TGGCCA	2 cut(s)	125, 258
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	7 cut(s)	20, 31, 49, 145, 166, 268, 276
Mox20I	TGGCCA	2 cut(s)	125, 258
MscI	TGGCCA	2 cut(s)	125, 258
MslI	CAYNNNNRTG	1 cut(s)	267
Msp20I	TGGCCA	2 cut(s)	125, 258
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	43, 212
MvaI	CCWGG	2 cut(s)	43, 212
NcoI	CCATGG	1 cut(s)	253
NlaIII	CATG	2 cut(s)	257, 268
NlaIV	GGNNCC	2 cut(s)	37, 216
OliI	CACNNNNGTG	1 cut(s)	267
PfoI	TCCNGGA	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	140
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	41, 210
PspGI	CCWGG	2 cut(s)	41, 210
PspN4I	GGNNCC	2 cut(s)	37, 216
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	267
SatI	GCNGC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	43, 212
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	4 cut(s)	14, 177, 216, 287
SfaNI	GCATC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SsiI	CCGC	3 cut(s)	109, 131, 138
StyD4I	CCNGG	2 cut(s)	41, 210
StyI	CCWWGG	1 cut(s)	253
TauI	GCSGC	1 cut(s)	141
TscAI	CASTG	1 cut(s)	106
TspRI	CASTG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.