Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005231

Physical Location & Seq

Genomic Coordinates Reverse (-)

3725509 .. 3726882

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06380.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCATCTGATGGCTCAATGTCTTCCCTTAATTCGGACTCGTCTTGGACTGCCAAGCAGAACAAGACGTTCGAGATTGCACTAGCTCTTTTCTCCAAGGATACCCCCGACCGCTGGGACAATATTGCCAGGATCGTCGGGAATAAGACACCTGAAGAGGTCAAGAGGCACTATGACCTTCTTCTAGAAGATGTCAAGCTAATAGAGTCCGGCGAAGTTCCTTTCCCGGATTACAGAACTTCTGGTGGGAGTGGGAATGGTCATGGCAAAGAGGATGATGAACCTGAAGCTCCACTGAATGATCAGCACAAGGAGAAGTCTCATGAAGCGGTGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0080090 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

113

Amino Acids

12.43

Weight (kDa)

4.78

Isoelectric Point (pI)

61.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21650
fragaria_vesca	FvH4_2g08910 FvH4_2g08910 FvH4_6g06380 FvH4_6g06380
malus_domestica	MD05G1065500.v1.1 MD10G1075200.v1.1
prunus_persica	Prupe.8G096300_v2.0.a1
pyrus_communis	pycom05g05690
rosa_chinensis	RchiOBHm_Chr3g0455471 RchiOBHm_Chr6g0264521
rosa_laevigata	RLG00000014247 RLG00000025357
rosa_multiflora	Rmu_sc0000578.1_g000011 Rmu_sc0005281.1_g000011
rosa_roxburghii	Rroxscaffold_176G00431860 Rroxscaffold_6G00424240
rosa_rugosa	Rorug03G0007800 Rorug06G0015800
rosa_samantha	Rh3AG067300 Rh3BG069600 Rh3CG068100 Rh3DG069700 Rh6AG132900 Rh6BG130500 Rh6CG128700 Rh6DG115900
rosa_wichuraiana	Rw0G009760 Rw3G005330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	112, 329
AclWI	GGATC	1 cut(s)	140
AcuI	CTGAAG	2 cut(s)	174, 306
AfiI	CCNNNNNNNGG	2 cut(s)	34, 114
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	3 cut(s)	86, 199, 290
AluI	AGCT	3 cut(s)	86, 199, 290
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	140
AsuC2I	CCSGG	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	15
BccI	CCATC	1 cut(s)	5
BciT130I	CCWGG	1 cut(s)	130
BciVI	GTATCC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	2 cut(s)	83, 185
BfuI	GTATCC	1 cut(s)	94
Bme1390I	CCNGG	2 cut(s)	130, 227
BmrFI	CCNGG	2 cut(s)	130, 227
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 114
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	2 cut(s)	34, 114
BseYI	CCCAGC	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	112
BsiEI	CGRYCG	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	210, 227
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	34, 114
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	132, 301
BspACI	CCGC	2 cut(s)	112, 329
BspHI	TCATGA	1 cut(s)	322
BspPI	GGATC	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	132, 301
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	2 cut(s)	135, 304
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	2 cut(s)	132, 301
BstMCI	CGRYCG	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	2 cut(s)	128, 225
BstV2I	GAAGAC	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	293
CciI	TCATGA	1 cut(s)	322
CviAII	CATG	2 cut(s)	263, 323
CviJI	RGCY	4 cut(s)	15, 86, 199, 290
CviKI_1	RGCY	4 cut(s)	15, 86, 199, 290
DpnI	GATC	2 cut(s)	134, 303
DpnII	GATC	2 cut(s)	132, 301
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	174, 306
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	2 cut(s)	266, 326
FaiI	YATR	4 cut(s)	174, 264, 324, 337
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	2 cut(s)	262, 322
FbaI	TGATCA	1 cut(s)	301
FokI	GGATG	1 cut(s)	287
FspBI	CTAG	2 cut(s)	83, 185
GsaI	CCCAGC	1 cut(s)	118
HapII	CCGG	2 cut(s)	210, 227
Hin1II	CATG	2 cut(s)	266, 326
HinfI	GANTC	2 cut(s)	38, 206
HpaII	CCGG	2 cut(s)	210, 227
Hpy188I	TCNGA	2 cut(s)	10, 37
Hpy188III	TCNNGA	5 cut(s)	73, 139, 163, 185, 323
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	266, 326
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	132, 301
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	8 cut(s)	100, 115, 142, 165, 223, 228, 240, 297
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	83, 185
MaeII	ACGT	1 cut(s)	68
MalI	GATC	2 cut(s)	134, 303
MboI	GATC	2 cut(s)	132, 301
MboII	GAAGA	4 cut(s)	15, 167, 173, 200
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	2 cut(s)	32, 215
MnlI	CCTC	3 cut(s)	151, 159, 265
MseI	TTAA	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	114
MspI	CCGG	2 cut(s)	210, 227
MspR9I	CCNGG	2 cut(s)	130, 227
MvaI	CCWGG	1 cut(s)	130
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	2 cut(s)	132, 301
NlaIII	CATG	2 cut(s)	266, 326
PagI	TCATGA	1 cut(s)	322
PfoI	TCCNGGA	1 cut(s)	225
PleI	GAGTC	2 cut(s)	32, 214
PpsI	GAGTC	2 cut(s)	32, 214
Psp6I	CCWGG	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	132, 301
SchI	GAGTC	2 cut(s)	32, 215
ScrFI	CCNGG	2 cut(s)	130, 227
SetI	ASST	8 cut(s)	71, 88, 154, 162, 180, 201, 286, 292
SfaNI	GCATC	1 cut(s)	14
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	2 cut(s)	112, 329
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	2 cut(s)	83, 185
StyD4I	CCNGG	2 cut(s)	128, 225
StyI	CCWWGG	1 cut(s)	96
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	300
TspDTI	ATGAA	2 cut(s)	294, 339
TspRI	CASTG	1 cut(s)	300
XbaI	TCTAGA	1 cut(s)	184
XspI	CTAG	2 cut(s)	83, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.