Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005231

Physical Location & Seq

Genomic Coordinates Forward (+)

7790423 .. 7791634

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCATCAAGCTCAATGTCTTCGCGTAACTCTGGCTCCTCTTGGACCGCCAAGCAGAACAAGGCCTTCGAGAAGGCTCTAGCCCTTTACGACAAGGACACCCCCGACCGCTGGTACAATGTTGCTAGGGCTGTCGGAAACAAGACTCCCGAGGAAGTCAAGAGGCACTATGACCTTCTTGTGGAAGATGTGAAGCATATCGAGTCCGGCCAAGTTCCTTTCCCGGATTACAGGACTTCTGGTGGGAGTGGGAACATCGGTCATGATGAGGAAAAGAGGATGAGGAACCTGAAGCTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0080090 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

101

Amino Acids

11.32

Weight (kDa)

8.93

Isoelectric Point (pI)

76.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 57	1.6e-06	Myb-like DNA-binding domain
Myb_DNA-binding_2	PF23082	14 - 60	2.8e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21650
fragaria_vesca	FvH4_2g08910 FvH4_2g08910 FvH4_6g06380 FvH4_6g06380
malus_domestica	MD05G1065500.v1.1 MD10G1075200.v1.1
prunus_persica	Prupe.8G096300_v2.0.a1
pyrus_communis	pycom05g05690
rosa_chinensis	RchiOBHm_Chr3g0455471 RchiOBHm_Chr6g0264521
rosa_laevigata	RLG00000014247 RLG00000025357
rosa_multiflora	Rmu_sc0000578.1_g000011 Rmu_sc0005281.1_g000011
rosa_roxburghii	Rroxscaffold_176G00431860 Rroxscaffold_6G00424240
rosa_rugosa	Rorug03G0007800 Rorug06G0015800
rosa_samantha	Rh3AG067300 Rh3BG069600 Rh3CG068100 Rh3DG069700 Rh6AG132900 Rh6BG130500 Rh6CG128700 Rh6DG115900
rosa_wichuraiana	Rw0G009760 Rw3G005330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	25
AciI	CCGC	2 cut(s)	48, 109
AcoI	YGGCCR	1 cut(s)	208
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	111, 181
AluBI	AGCT	2 cut(s)	12, 295
AluI	AGCT	2 cut(s)	12, 295
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	2 cut(s)	63, 208
AspS9I	GGNCC	1 cut(s)	45
AsuC2I	CCSGG	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	2 cut(s)	80, 126
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	45
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	2 cut(s)	37, 287
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 181
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	2 cut(s)	111, 181
BseRI	GAGGAG	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	2 cut(s)	65, 210
BsiEI	CGRYCG	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	207, 224
BslI	CCNNNNNNNGG	2 cut(s)	111, 181
BsnI	GGCC	2 cut(s)	65, 210
BsoBI	CYCGRG	1 cut(s)	149
BspACI	CCGC	2 cut(s)	48, 109
BspANI	GGCC	2 cut(s)	65, 210
BspFNI	CGCG	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	37, 287
BssECI	CCNNGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	285
BstFNI	CGCG	1 cut(s)	25
BstMCI	CGRYCG	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	222
BstUI	CGCG	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	65, 210
BtsCI	GGATG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	298
CciI	TCATGA	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	8 cut(s)	12, 36, 65, 77, 83, 131, 210, 295
CviKI_1	RGCY	8 cut(s)	12, 36, 65, 77, 83, 131, 210, 295
CviQI	GTAC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	208
Eco147I	AGGCCT	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	149
FaeI	CATG	1 cut(s)	266
FaiI	YATR	3 cut(s)	171, 198, 264
FatI	CATG	1 cut(s)	262
FokI	GGATG	1 cut(s)	292
FspBI	CTAG	2 cut(s)	80, 126
HaeIII	GGCC	2 cut(s)	65, 210
HapII	CCGG	2 cut(s)	207, 224
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	2 cut(s)	145, 203
HpaII	CCGG	2 cut(s)	207, 224
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	4 cut(s)	70, 149, 160, 263
HpyAV	CCTTC	3 cut(s)	67, 76, 185
Hsp92II	CATG	1 cut(s)	266
LmnI	GCTCC	2 cut(s)	41, 300
LpnPI	CCDG	6 cut(s)	18, 97, 217, 220, 225, 237
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	80, 126
MaeIII	GTNAC	1 cut(s)	26
MboII	GAAGA	2 cut(s)	12, 197
MlyI	GAGTC	2 cut(s)	139, 212
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	6 cut(s)	49, 145, 156, 262, 270, 276
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	2 cut(s)	207, 224
MspR9I	CCNGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	25
NciI	CCSGG	1 cut(s)	224
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	2 cut(s)	37, 287
PagI	TCATGA	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	222
PleI	GAGTC	2 cut(s)	139, 211
PpsI	GAGTC	2 cut(s)	139, 211
PspN4I	GGNNCC	2 cut(s)	37, 287
PspPI	GGNCC	1 cut(s)	45
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
Sau96I	GGNCC	1 cut(s)	45
SchI	GAGTC	2 cut(s)	139, 212
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	4 cut(s)	14, 177, 291, 297
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	45
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	2 cut(s)	48, 109
SspMI	CTAG	2 cut(s)	80, 126
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	222
TaqI	TCGA	2 cut(s)	69, 201
TaqII	GACCGA	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	45
XspI	CTAG	2 cut(s)	80, 126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.